Wall clock time and date at job start Wed Apr 1 2020 04:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99899 * 2 1 4 4 H 1.48501 * 109.47058 * 264.80945 * 3 2 1 5 5 H 1.48501 * 109.47458 * 24.80631 * 3 2 1 6 6 H 1.48497 * 109.47293 * 144.81076 * 3 2 1 7 7 C 1.37873 * 119.99586 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00598 * 4.87506 * 7 2 1 9 9 C 1.50710 * 119.99581 * 184.87573 * 7 2 1 10 10 H 1.09002 * 109.46994 * 334.94700 * 9 7 2 11 11 N 1.46503 * 109.46534 * 94.94390 * 9 7 2 12 12 C 1.34779 * 119.99501 * 204.99574 * 11 9 7 13 13 O 1.21286 * 120.00259 * 0.02562 * 12 11 9 14 14 C 1.50699 * 119.99834 * 180.02562 * 12 11 9 15 15 H 1.09003 * 109.74180 * 305.60777 * 14 12 11 16 16 C 1.53469 * 109.71245 * 66.21755 * 14 12 11 17 17 O 1.43168 * 108.22995 * 179.46396 * 16 14 12 18 18 C 1.36211 * 116.69748 * 313.76072 * 17 16 14 19 19 C 1.38684 * 119.33328 * 197.17802 * 18 17 16 20 20 C 1.38168 * 120.14386 * 180.16718 * 19 18 17 21 21 C 1.38700 * 120.05325 * 0.02562 * 20 19 18 22 22 O 1.35979 * 120.00601 * 179.88973 * 21 20 19 23 23 C 1.38610 * 119.99312 * 359.90688 * 21 20 19 24 24 C 1.38694 * 120.03356 * 0.03063 * 23 21 20 25 25 O 1.36113 * 119.34339 * 180.14070 * 24 23 21 26 26 C 1.52997 * 109.47121 * 214.94195 * 9 7 2 27 27 F 1.39898 * 109.47454 * 294.94086 * 26 9 7 28 28 F 1.39901 * 109.46981 * 54.93729 * 26 9 7 29 29 F 1.39895 * 109.47332 * 174.93660 * 26 9 7 30 30 H 0.96996 * 120.00438 * 0.02562 * 1 2 3 31 31 H 0.96996 * 120.00308 * 25.00285 * 11 9 7 32 32 H 1.09007 * 109.70742 * 299.14487 * 16 14 12 33 33 H 1.08997 * 109.70774 * 59.77451 * 16 14 12 34 34 H 1.08008 * 119.92616 * 0.13698 * 19 18 17 35 35 H 1.08007 * 119.97691 * 179.97438 * 20 19 18 36 36 H 0.96694 * 113.99765 * 89.99775 * 22 21 20 37 37 H 1.08006 * 119.98377 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6063 1.9831 -1.3943 5 1 1.3960 2.6819 0.5874 6 1 3.4875 1.4744 0.8068 7 6 2.0045 -1.1941 0.0005 8 1 1.4675 -2.1277 -0.0785 9 6 3.5075 -1.1964 0.1115 10 1 3.9004 -0.2485 -0.2563 11 7 3.8932 -1.3739 1.5136 12 6 5.0873 -0.9228 1.9462 13 8 5.8423 -0.3695 1.1749 14 6 5.4845 -1.1059 3.3884 15 1 4.7152 -0.6883 4.0380 16 6 5.6620 -2.6000 3.6907 17 8 6.0503 -2.7364 5.0619 18 6 7.0345 -1.9054 5.5048 19 6 7.7023 -2.2098 6.6815 20 6 8.7010 -1.3767 7.1480 21 6 9.0381 -0.2325 6.4403 22 8 10.0196 0.5879 6.9014 23 6 8.3741 0.0748 5.2630 24 6 7.3723 -0.7610 4.7925 25 8 6.7314 -0.4472 3.6334 26 6 4.0787 -2.3438 -0.7239 27 9 3.6669 -3.5658 -0.1813 28 9 3.6155 -2.2382 -2.0398 29 9 5.4760 -2.2767 -0.7146 30 1 -0.4850 0.8400 -0.0004 31 1 3.2894 -1.8162 2.1305 32 1 4.7211 -3.1237 3.5212 33 1 6.4362 -3.0160 3.0461 34 1 7.4408 -3.0998 7.2347 35 1 9.2191 -1.6162 8.0650 36 1 10.9029 0.3654 6.5770 37 1 8.6370 0.9656 4.7118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928804662.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:05 Heat of formation + Delta-G solvation = -297.526958 kcal Electronic energy + Delta-G solvation = -31255.588019 eV Core-core repulsion = 26162.190727 eV Total energy + Delta-G solvation = -5093.397292 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.91199 -48.42575 -48.39056 -42.61523 -40.80265 -39.71857 -38.41418 -36.96617 -36.69049 -34.65370 -32.85088 -31.53570 -30.66243 -29.09366 -26.95242 -26.38158 -24.04651 -23.66655 -22.53645 -21.62917 -20.35555 -20.02930 -19.42464 -19.28551 -18.90928 -18.53398 -18.42660 -18.22614 -17.28380 -17.01923 -16.59034 -16.41759 -16.00583 -15.85186 -15.54479 -15.36667 -15.31716 -15.14696 -15.01569 -14.95898 -14.85237 -14.66469 -14.59583 -14.53851 -14.31700 -14.05138 -13.75517 -13.36940 -13.09369 -12.66491 -12.57979 -12.05932 -12.03628 -11.93940 -11.89414 -11.64978 -11.16768 -10.95950 -10.33458 -9.75899 -9.10892 -8.60070 -6.78691 0.07786 0.14434 1.15517 1.21657 1.30626 1.33003 1.39036 1.90737 2.02481 2.12131 2.29805 2.48395 2.85820 2.94846 3.15424 3.29306 3.31422 3.36589 3.46357 3.58902 3.70849 3.98343 4.07480 4.19904 4.30171 4.32229 4.36422 4.70399 4.87132 4.91309 5.05069 5.22300 5.30016 5.43329 5.69223 5.82422 6.18631 6.40534 6.46233 6.82577 6.94619 7.01382 8.51760 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.015812 B = 0.003306 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.402695 B = 8467.527790 C = 9063.906649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.069 3.931 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.262 1.262 7 C -0.535 4.535 8 H 0.074 0.926 9 C 0.210 3.790 10 H 0.078 0.922 11 N -0.698 5.698 12 C 0.512 3.488 13 O -0.553 6.553 14 C 0.037 3.963 15 H 0.130 0.870 16 C 0.040 3.960 17 O -0.299 6.299 18 C 0.021 3.979 19 C -0.090 4.090 20 C -0.131 4.131 21 C 0.116 3.884 22 O -0.500 6.500 23 C -0.158 4.158 24 C 0.048 3.952 25 O -0.306 6.306 26 C 0.441 3.559 27 F -0.182 7.182 28 F -0.184 7.184 29 F -0.194 7.194 30 H 0.282 0.718 31 H 0.418 0.582 32 H 0.160 0.840 33 H 0.081 0.919 34 H 0.166 0.834 35 H 0.171 0.829 36 H 0.413 0.587 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.509 -4.529 13.970 20.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.139 4.139 3 Si 0.736 3.264 4 H -0.188 1.188 5 H -0.194 1.194 6 H -0.187 1.187 7 C -0.572 4.572 8 H 0.092 0.908 9 C 0.105 3.895 10 H 0.096 0.904 11 N -0.352 5.352 12 C 0.297 3.703 13 O -0.430 6.430 14 C -0.023 4.023 15 H 0.147 0.853 16 C -0.036 4.036 17 O -0.213 6.213 18 C -0.024 4.024 19 C -0.108 4.108 20 C -0.149 4.149 21 C 0.071 3.929 22 O -0.314 6.314 23 C -0.177 4.177 24 C 0.003 3.997 25 O -0.221 6.221 26 C 0.385 3.615 27 F -0.164 7.164 28 F -0.165 7.165 29 F -0.175 7.175 30 H 0.092 0.908 31 H 0.257 0.743 32 H 0.177 0.823 33 H 0.099 0.901 34 H 0.184 0.816 35 H 0.188 0.812 36 H 0.273 0.727 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 14.375 -3.786 13.639 20.175 hybrid contribution 0.130 0.440 -0.839 0.956 sum 14.505 -3.346 12.800 19.633 Atomic orbital electron populations 1.69901 1.07486 1.29497 1.45566 1.25479 0.95199 1.01487 0.91720 0.86240 0.79509 0.80520 0.80088 1.18814 1.19410 1.18686 1.20651 0.87001 0.95595 1.53980 0.90777 1.19798 0.96590 0.92302 0.80761 0.90416 1.47039 1.17153 1.59263 1.11789 1.20368 0.82143 0.78907 0.88856 1.90714 1.52256 1.42779 1.57275 1.23037 0.87192 0.96492 0.95579 0.85266 1.23660 1.05231 0.92994 0.81683 1.86358 1.51506 1.56300 1.27121 1.19258 0.94695 0.90472 0.97939 1.20655 0.94623 1.01641 0.93883 1.21504 0.98749 0.92760 1.01923 1.18028 0.92791 0.90775 0.91313 1.84807 1.19611 1.54762 1.72217 1.20782 0.98727 1.00599 0.97566 1.19028 0.97448 0.94849 0.88396 1.86354 1.34204 1.64523 1.36978 1.21487 0.74937 0.85251 0.79800 1.93087 1.90176 1.47424 1.85707 1.93111 1.88747 1.96216 1.38444 1.93159 1.31316 1.96547 1.96527 0.90831 0.74308 0.82277 0.90106 0.81633 0.81205 0.72707 0.84699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.29 13.96 21.45 0.30 -46.99 16 2 C 0.07 3.45 5.47 84.65 0.46 3.91 16 3 Si 0.91 40.18 26.99 68.60 1.85 42.03 16 4 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 5 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 6 H -0.26 -11.80 6.82 99.48 0.68 -11.12 16 7 C -0.53 -25.90 8.52 25.60 0.22 -25.68 16 8 H 0.07 3.90 8.00 -2.92 -0.02 3.87 16 9 C 0.21 9.08 1.71 44.25 0.08 9.16 16 10 H 0.08 3.64 4.73 -2.39 -0.01 3.63 16 11 N -0.70 -25.33 4.89 -446.07 -2.18 -27.51 16 12 C 0.51 18.92 6.84 87.66 0.60 19.52 16 13 O -0.55 -25.12 15.09 15.78 0.24 -24.88 16 14 C 0.04 1.09 3.44 30.01 0.10 1.20 16 15 H 0.13 3.29 8.14 -2.39 -0.02 3.27 16 16 C 0.04 0.95 6.53 72.14 0.47 1.42 16 17 O -0.30 -7.13 10.42 -83.73 -0.87 -8.00 16 18 C 0.02 0.51 6.49 22.55 0.15 0.66 16 19 C -0.09 -1.59 9.95 22.36 0.22 -1.37 16 20 C -0.13 -2.03 9.98 22.36 0.22 -1.81 16 21 C 0.12 2.22 6.70 22.47 0.15 2.37 16 22 O -0.50 -7.73 13.50 -93.32 -1.26 -8.99 16 23 C -0.16 -3.90 9.90 22.47 0.22 -3.68 16 24 C 0.05 1.35 6.49 22.55 0.15 1.49 16 25 O -0.31 -10.30 9.62 -69.06 -0.66 -10.96 16 26 C 0.44 18.41 2.83 71.98 0.20 18.61 16 27 F -0.18 -7.07 16.93 44.97 0.76 -6.31 16 28 F -0.18 -7.96 16.89 44.97 0.76 -7.20 16 29 F -0.19 -8.09 15.83 44.97 0.71 -7.38 16 30 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 31 H 0.42 12.64 8.54 -92.71 -0.79 11.85 16 32 H 0.16 2.82 8.09 -2.38 -0.02 2.80 16 33 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 35 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 36 H 0.41 2.18 9.06 -74.06 -0.67 1.51 16 37 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -66.63 337.22 2.58 -64.04 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -0.30 Total: 16.35 kcal Atomic # 6 Polarization: 22.56 SS G_CDS: 3.25 Total: 25.80 kcal Atomic # 7 Polarization: -72.62 SS G_CDS: -1.88 Total: -74.51 kcal Atomic # 8 Polarization: -50.28 SS G_CDS: -2.56 Total: -52.84 kcal Atomic # 9 Polarization: -23.12 SS G_CDS: 2.23 Total: -20.88 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 1.85 Total: 42.03 kcal Total: -66.63 2.58 -64.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928804662.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -233.485 kcal (2) G-P(sol) polarization free energy of solvation -66.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -300.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -297.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds