Wall clock time and date at job start Wed Apr 1 2020 04:16:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86794 * 120.00464 * 2 1
4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1
5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1
6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1
7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3
8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1
9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1
10 10 H 1.09004 * 109.46965 * 299.72070 * 9 7 2
11 11 N 1.46491 * 109.46957 * 179.72213 * 9 7 2
12 12 C 1.34780 * 120.00170 * 155.00354 * 11 9 7
13 13 O 1.21281 * 119.99806 * 359.97438 * 12 11 9
14 14 C 1.50700 * 120.00091 * 180.02562 * 12 11 9
15 15 H 1.09001 * 109.70218 * 305.57103 * 14 12 11
16 16 C 1.53470 * 109.70851 * 66.19915 * 14 12 11
17 17 O 1.43181 * 108.22301 * 179.45820 * 16 14 12
18 18 C 1.36210 * 116.68951 * 313.73768 * 17 16 14
19 19 C 1.38687 * 119.32671 * 197.17886 * 18 17 16
20 20 C 1.38177 * 120.14153 * 180.18384 * 19 18 17
21 21 C 1.38696 * 120.05038 * 359.96470 * 20 19 18
22 22 O 1.35979 * 119.99917 * 179.97438 * 21 20 19
23 23 C 1.38607 * 119.99765 * 359.97438 * 21 20 19
24 24 C 1.38684 * 120.03290 * 359.97059 * 23 21 20
25 25 O 1.36115 * 119.34823 * 180.15896 * 24 23 21
26 26 C 1.53000 * 109.47245 * 59.72060 * 9 7 2
27 27 F 1.39898 * 109.47151 * 59.99989 * 26 9 7
28 28 F 1.39899 * 109.47223 * 180.02562 * 26 9 7
29 29 F 1.39909 * 109.47130 * 300.00212 * 26 9 7
30 30 H 0.97005 * 119.99651 * 0.02562 * 1 2 3
31 31 H 0.97002 * 120.00109 * 334.99085 * 11 9 7
32 32 H 1.08996 * 109.71317 * 299.14108 * 16 14 12
33 33 H 1.09002 * 109.71071 * 59.77583 * 16 14 12
34 34 H 1.08004 * 119.92740 * 0.16758 * 19 18 17
35 35 H 1.07997 * 119.97215 * 179.97438 * 20 19 18
36 36 H 0.96694 * 113.99965 * 90.00470 * 22 21 20
37 37 H 1.08006 * 119.98697 * 179.97438 * 23 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 2.4968 2.0463 -1.4001
5 1 1.4467 2.6526 0.6999
6 1 3.5468 1.4401 0.7001
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0001
9 6 1.2509 -2.4992 -0.0054
10 1 0.6242 -2.5609 0.8844
11 7 2.2028 -3.6127 -0.0102
12 6 1.8366 -4.8145 0.4776
13 8 0.7191 -4.9740 0.9210
14 6 2.8161 -5.9598 0.4731
15 1 3.1986 -6.1123 -0.5361
16 6 3.9782 -5.6508 1.4268
17 8 4.8808 -6.7621 1.4076
18 6 4.3264 -8.0023 1.5069
19 6 5.1288 -9.0794 1.8524
20 6 4.5848 -10.3454 1.9542
21 6 3.2335 -10.5423 1.7115
22 8 2.6993 -11.7888 1.8115
23 6 2.4276 -9.4684 1.3671
24 6 2.9717 -8.1968 1.2656
25 8 2.1669 -7.1517 0.9296
26 6 0.3714 -2.5747 -1.2550
27 9 1.1757 -2.4955 -2.3969
28 9 -0.3286 -3.7859 -1.2602
29 9 -0.5377 -1.5112 -1.2503
30 1 -0.4850 0.8401 -0.0004
31 1 3.0967 -3.4851 -0.3647
32 1 4.4961 -4.7507 1.0956
33 1 3.5958 -5.5050 2.4371
34 1 6.1813 -8.9282 2.0422
35 1 5.2122 -11.1823 2.2231
36 1 2.3705 -12.0061 2.6944
37 1 1.3754 -9.6220 1.1777
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000928804663.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:16:08
Heat of formation + Delta-G solvation = -250.974133 kcal
Electronic energy + Delta-G solvation = -31119.343639 eV
Core-core repulsion = 26027.965028 eV
Total energy + Delta-G solvation = -5091.378610 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 347.086 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-48.45825 -46.11502 -45.71613 -41.57924 -39.47330 -38.68225 -37.33292 -36.11188
-34.86530 -32.85846 -31.48383 -30.54741 -28.84756 -27.82417 -25.32240 -24.67201
-23.15261 -22.32282 -21.22345 -20.15520 -19.16116 -18.45843 -18.09723 -17.40546
-16.96142 -16.91086 -16.72107 -16.36086 -15.78277 -15.58614 -15.26367 -15.02470
-14.93856 -14.66884 -14.52958 -14.08136 -13.94917 -13.43898 -13.28411 -13.11526
-13.02337 -12.65762 -12.52594 -12.49771 -12.38651 -12.10393 -11.92465 -11.55872
-11.30001 -11.13239 -11.06958 -10.97648 -10.90986 -10.72001 -10.50474 -9.80852
-9.47257 -8.86333 -8.85094 -8.51551 -8.19272 -6.34669 -4.60269 0.93609
1.02375 2.50247 2.74231 2.89040 3.12215 3.18893 3.20854 3.32893
3.62302 4.01919 4.08372 4.12508 4.39726 4.43257 4.63310 4.76764
4.82117 4.86613 4.92779 5.08910 5.16667 5.30720 5.55696 5.69574
5.71247 5.74316 5.92061 6.06492 6.10767 6.20091 6.64417 6.74050
6.89727 7.15260 7.29368 7.39808 7.50614 8.00491 8.34280 8.55216
9.08074 10.56634
Molecular weight = 347.09amu
Principal moments of inertia in cm(-1)
A = 0.021548 B = 0.002844 C = 0.002618
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1299.140864 B = 9844.574898 C =10691.261864
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.837 5.837
2 C 0.066 3.934
3 Si 0.917 3.083
4 H -0.276 1.276
5 H -0.282 1.282
6 H -0.270 1.270
7 C -0.556 4.556
8 H 0.080 0.920
9 C 0.247 3.753
10 H 0.088 0.912
11 N -0.704 5.704
12 C 0.516 3.484
13 O -0.503 6.503
14 C 0.035 3.965
15 H 0.111 0.889
16 C 0.034 3.966
17 O -0.300 6.300
18 C 0.039 3.961
19 C -0.096 4.096
20 C -0.143 4.143
21 C 0.108 3.892
22 O -0.494 6.494
23 C -0.139 4.139
24 C 0.075 3.925
25 O -0.275 6.275
26 C 0.416 3.584
27 F -0.208 7.208
28 F -0.217 7.217
29 F -0.135 7.135
30 H 0.270 0.730
31 H 0.401 0.599
32 H 0.134 0.866
33 H 0.088 0.912
34 H 0.140 0.860
35 H 0.137 0.863
36 H 0.391 0.609
37 H 0.143 0.857
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.609 -14.318 3.878 17.675
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.470 5.470
2 C -0.144 4.144
3 Si 0.743 3.257
4 H -0.201 1.201
5 H -0.207 1.207
6 H -0.194 1.194
7 C -0.592 4.592
8 H 0.098 0.902
9 C 0.142 3.858
10 H 0.106 0.894
11 N -0.356 5.356
12 C 0.298 3.702
13 O -0.376 6.376
14 C -0.026 4.026
15 H 0.128 0.872
16 C -0.042 4.042
17 O -0.215 6.215
18 C -0.006 4.006
19 C -0.115 4.115
20 C -0.162 4.162
21 C 0.064 3.936
22 O -0.304 6.304
23 C -0.159 4.159
24 C 0.029 3.971
25 O -0.188 6.188
26 C 0.359 3.641
27 F -0.190 7.190
28 F -0.199 7.199
29 F -0.116 7.116
30 H 0.081 0.919
31 H 0.235 0.765
32 H 0.152 0.848
33 H 0.106 0.894
34 H 0.158 0.842
35 H 0.155 0.845
36 H 0.246 0.754
37 H 0.161 0.839
Dipole moment (debyes) X Y Z Total
from point charges 8.686 -14.266 3.584 17.083
hybrid contribution 0.407 1.047 -0.150 1.133
sum 9.093 -13.219 3.434 16.408
Atomic orbital electron populations
1.70399 1.05908 1.27605 1.43076 1.25090 0.95180 1.00217 0.93895
0.86177 0.79516 0.81448 0.78520 1.20145 1.20732 1.19406 1.20847
0.93821 0.87851 1.56714 0.90241 1.19826 0.88566 0.85349 0.92036
0.89405 1.45979 1.17612 1.09753 1.62206 1.19556 0.87925 0.83114
0.79641 1.90773 1.20299 1.82158 1.44378 1.23038 0.93801 0.85831
0.99903 0.87160 1.23633 0.90656 0.89122 1.00771 1.86361 1.34095
1.11750 1.89248 1.18975 0.91475 0.86398 1.03713 1.20285 1.00242
0.89947 1.01038 1.21148 0.94872 0.96840 1.03324 1.17952 0.90864
0.83850 1.00971 1.84860 1.80561 1.28634 1.36370 1.20644 1.01717
0.88545 1.04957 1.18772 0.89050 0.88620 1.00653 1.86448 1.32029
1.19925 1.80372 1.23129 0.80935 0.72927 0.87061 1.92996 1.74361
1.96155 1.55496 1.93083 1.81461 1.48393 1.96976 1.93419 1.68327
1.53674 1.96159 0.91936 0.76501 0.84844 0.89390 0.84201 0.84482
0.75364 0.83944
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.84 -22.12 9.49 55.43 0.53 -21.60 16
2 C 0.07 1.63 5.20 -17.82 -0.09 1.54 16
3 Si 0.92 19.23 29.54 -169.99 -5.02 14.21 16
4 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16
5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16
6 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16
7 C -0.56 -13.30 8.47 -34.44 -0.29 -13.59 16
8 H 0.08 1.76 7.74 -52.49 -0.41 1.35 16
9 C 0.25 5.78 2.21 -69.09 -0.15 5.63 16
10 H 0.09 2.30 7.58 -51.93 -0.39 1.91 16
11 N -0.70 -13.08 4.97 -54.93 -0.27 -13.35 16
12 C 0.52 9.62 6.72 -10.98 -0.07 9.55 16
13 O -0.50 -11.63 15.09 -14.15 -0.21 -11.84 16
14 C 0.03 0.51 3.44 -27.64 -0.10 0.42 16
15 H 0.11 1.41 8.14 -51.93 -0.42 0.98 16
16 C 0.03 0.41 6.53 37.40 0.24 0.65 16
17 O -0.30 -3.75 10.42 -33.19 -0.35 -4.10 16
18 C 0.04 0.50 6.49 -39.14 -0.25 0.25 16
19 C -0.10 -0.98 9.96 -39.44 -0.39 -1.38 16
20 C -0.14 -1.34 9.98 -39.43 -0.39 -1.73 16
21 C 0.11 1.14 6.70 -39.28 -0.26 0.88 16
22 O -0.49 -4.41 13.50 -19.67 -0.27 -4.68 16
23 C -0.14 -1.74 9.90 -39.28 -0.39 -2.13 16
24 C 0.08 1.06 6.49 -39.15 -0.25 0.80 16
25 O -0.27 -4.52 9.62 -47.07 -0.45 -4.98 16
26 C 0.42 10.29 2.81 37.16 0.10 10.39 16
27 F -0.21 -4.94 16.94 2.25 0.04 -4.90 16
28 F -0.22 -5.40 15.68 2.25 0.04 -5.37 16
29 F -0.13 -3.62 12.90 2.25 0.03 -3.59 16
30 H 0.27 6.77 8.31 -40.82 -0.34 6.44 16
31 H 0.40 6.06 8.49 -40.82 -0.35 5.72 16
32 H 0.13 1.25 8.09 -51.93 -0.42 0.83 16
33 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16
34 H 0.14 1.13 8.06 -52.48 -0.42 0.70 16
35 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16
36 H 0.39 1.55 9.06 45.56 0.41 1.96 16
37 H 0.14 1.72 8.06 -52.48 -0.42 1.30 16
LS Contribution 334.08 15.07 5.03 5.03
Total: -1.00 -31.91 334.08 -5.61 -37.52
By element:
Atomic # 1 Polarization: 8.77 SS G_CDS: -2.40 Total: 6.36 kcal
Atomic # 6 Polarization: 13.58 SS G_CDS: -2.30 Total: 11.27 kcal
Atomic # 7 Polarization: -35.20 SS G_CDS: 0.25 Total: -34.95 kcal
Atomic # 8 Polarization: -24.31 SS G_CDS: -1.28 Total: -25.59 kcal
Atomic # 9 Polarization: -13.96 SS G_CDS: 0.10 Total: -13.86 kcal
Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.21 kcal
Total LS contribution 5.03 Total: 5.03 kcal
Total: -31.91 -5.61 -37.52 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000928804663.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -213.450 kcal
(2) G-P(sol) polarization free energy of solvation -31.910 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -245.360 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.614 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.524 kcal
(6) G-S(sol) free energy of system = (1) + (5) -250.974 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds