Wall clock time and date at job start Wed Apr 1 2020 04:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 11 11 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 12 12 C 1.34780 * 120.00170 * 155.00354 * 11 9 7 13 13 O 1.21281 * 119.99806 * 359.97438 * 12 11 9 14 14 C 1.50700 * 120.00091 * 180.02562 * 12 11 9 15 15 H 1.09001 * 109.70218 * 305.57103 * 14 12 11 16 16 C 1.53470 * 109.70851 * 66.19915 * 14 12 11 17 17 O 1.43181 * 108.22301 * 179.45820 * 16 14 12 18 18 C 1.36210 * 116.68951 * 313.73768 * 17 16 14 19 19 C 1.38687 * 119.32671 * 197.17886 * 18 17 16 20 20 C 1.38177 * 120.14153 * 180.18384 * 19 18 17 21 21 C 1.38696 * 120.05038 * 359.96470 * 20 19 18 22 22 O 1.35979 * 119.99917 * 179.97438 * 21 20 19 23 23 C 1.38607 * 119.99765 * 359.97438 * 21 20 19 24 24 C 1.38684 * 120.03290 * 359.97059 * 23 21 20 25 25 O 1.36115 * 119.34823 * 180.15896 * 24 23 21 26 26 C 1.53000 * 109.47245 * 59.72060 * 9 7 2 27 27 F 1.39898 * 109.47151 * 59.99989 * 26 9 7 28 28 F 1.39899 * 109.47223 * 180.02562 * 26 9 7 29 29 F 1.39909 * 109.47130 * 300.00212 * 26 9 7 30 30 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 31 31 H 0.97002 * 120.00109 * 334.99085 * 11 9 7 32 32 H 1.08996 * 109.71317 * 299.14108 * 16 14 12 33 33 H 1.09002 * 109.71071 * 59.77583 * 16 14 12 34 34 H 1.08004 * 119.92740 * 0.16758 * 19 18 17 35 35 H 1.07997 * 119.97215 * 179.97438 * 20 19 18 36 36 H 0.96694 * 113.99965 * 90.00470 * 22 21 20 37 37 H 1.08006 * 119.98697 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6242 -2.5609 0.8844 11 7 2.2028 -3.6127 -0.0102 12 6 1.8366 -4.8145 0.4776 13 8 0.7191 -4.9740 0.9210 14 6 2.8161 -5.9598 0.4731 15 1 3.1986 -6.1123 -0.5361 16 6 3.9782 -5.6508 1.4268 17 8 4.8808 -6.7621 1.4076 18 6 4.3264 -8.0023 1.5069 19 6 5.1288 -9.0794 1.8524 20 6 4.5848 -10.3454 1.9542 21 6 3.2335 -10.5423 1.7115 22 8 2.6993 -11.7888 1.8115 23 6 2.4276 -9.4684 1.3671 24 6 2.9717 -8.1968 1.2656 25 8 2.1669 -7.1517 0.9296 26 6 0.3714 -2.5747 -1.2550 27 9 1.1757 -2.4955 -2.3969 28 9 -0.3286 -3.7859 -1.2602 29 9 -0.5377 -1.5112 -1.2503 30 1 -0.4850 0.8401 -0.0004 31 1 3.0967 -3.4851 -0.3647 32 1 4.4961 -4.7507 1.0956 33 1 3.5958 -5.5050 2.4371 34 1 6.1813 -8.9282 2.0422 35 1 5.2122 -11.1823 2.2231 36 1 2.3705 -12.0061 2.6944 37 1 1.3754 -9.6220 1.1777 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928804663.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:08 Heat of formation + Delta-G solvation = -250.974133 kcal Electronic energy + Delta-G solvation = -31119.343639 eV Core-core repulsion = 26027.965028 eV Total energy + Delta-G solvation = -5091.378610 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.45825 -46.11502 -45.71613 -41.57924 -39.47330 -38.68225 -37.33292 -36.11188 -34.86530 -32.85846 -31.48383 -30.54741 -28.84756 -27.82417 -25.32240 -24.67201 -23.15261 -22.32282 -21.22345 -20.15520 -19.16116 -18.45843 -18.09723 -17.40546 -16.96142 -16.91086 -16.72107 -16.36086 -15.78277 -15.58614 -15.26367 -15.02470 -14.93856 -14.66884 -14.52958 -14.08136 -13.94917 -13.43898 -13.28411 -13.11526 -13.02337 -12.65762 -12.52594 -12.49771 -12.38651 -12.10393 -11.92465 -11.55872 -11.30001 -11.13239 -11.06958 -10.97648 -10.90986 -10.72001 -10.50474 -9.80852 -9.47257 -8.86333 -8.85094 -8.51551 -8.19272 -6.34669 -4.60269 0.93609 1.02375 2.50247 2.74231 2.89040 3.12215 3.18893 3.20854 3.32893 3.62302 4.01919 4.08372 4.12508 4.39726 4.43257 4.63310 4.76764 4.82117 4.86613 4.92779 5.08910 5.16667 5.30720 5.55696 5.69574 5.71247 5.74316 5.92061 6.06492 6.10767 6.20091 6.64417 6.74050 6.89727 7.15260 7.29368 7.39808 7.50614 8.00491 8.34280 8.55216 9.08074 10.56634 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.021548 B = 0.002844 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.140864 B = 9844.574898 C =10691.261864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.066 3.934 3 Si 0.917 3.083 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.556 4.556 8 H 0.080 0.920 9 C 0.247 3.753 10 H 0.088 0.912 11 N -0.704 5.704 12 C 0.516 3.484 13 O -0.503 6.503 14 C 0.035 3.965 15 H 0.111 0.889 16 C 0.034 3.966 17 O -0.300 6.300 18 C 0.039 3.961 19 C -0.096 4.096 20 C -0.143 4.143 21 C 0.108 3.892 22 O -0.494 6.494 23 C -0.139 4.139 24 C 0.075 3.925 25 O -0.275 6.275 26 C 0.416 3.584 27 F -0.208 7.208 28 F -0.217 7.217 29 F -0.135 7.135 30 H 0.270 0.730 31 H 0.401 0.599 32 H 0.134 0.866 33 H 0.088 0.912 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.391 0.609 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.609 -14.318 3.878 17.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.144 4.144 3 Si 0.743 3.257 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.592 4.592 8 H 0.098 0.902 9 C 0.142 3.858 10 H 0.106 0.894 11 N -0.356 5.356 12 C 0.298 3.702 13 O -0.376 6.376 14 C -0.026 4.026 15 H 0.128 0.872 16 C -0.042 4.042 17 O -0.215 6.215 18 C -0.006 4.006 19 C -0.115 4.115 20 C -0.162 4.162 21 C 0.064 3.936 22 O -0.304 6.304 23 C -0.159 4.159 24 C 0.029 3.971 25 O -0.188 6.188 26 C 0.359 3.641 27 F -0.190 7.190 28 F -0.199 7.199 29 F -0.116 7.116 30 H 0.081 0.919 31 H 0.235 0.765 32 H 0.152 0.848 33 H 0.106 0.894 34 H 0.158 0.842 35 H 0.155 0.845 36 H 0.246 0.754 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.686 -14.266 3.584 17.083 hybrid contribution 0.407 1.047 -0.150 1.133 sum 9.093 -13.219 3.434 16.408 Atomic orbital electron populations 1.70399 1.05908 1.27605 1.43076 1.25090 0.95180 1.00217 0.93895 0.86177 0.79516 0.81448 0.78520 1.20145 1.20732 1.19406 1.20847 0.93821 0.87851 1.56714 0.90241 1.19826 0.88566 0.85349 0.92036 0.89405 1.45979 1.17612 1.09753 1.62206 1.19556 0.87925 0.83114 0.79641 1.90773 1.20299 1.82158 1.44378 1.23038 0.93801 0.85831 0.99903 0.87160 1.23633 0.90656 0.89122 1.00771 1.86361 1.34095 1.11750 1.89248 1.18975 0.91475 0.86398 1.03713 1.20285 1.00242 0.89947 1.01038 1.21148 0.94872 0.96840 1.03324 1.17952 0.90864 0.83850 1.00971 1.84860 1.80561 1.28634 1.36370 1.20644 1.01717 0.88545 1.04957 1.18772 0.89050 0.88620 1.00653 1.86448 1.32029 1.19925 1.80372 1.23129 0.80935 0.72927 0.87061 1.92996 1.74361 1.96155 1.55496 1.93083 1.81461 1.48393 1.96976 1.93419 1.68327 1.53674 1.96159 0.91936 0.76501 0.84844 0.89390 0.84201 0.84482 0.75364 0.83944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.12 9.49 55.43 0.53 -21.60 16 2 C 0.07 1.63 5.20 -17.82 -0.09 1.54 16 3 Si 0.92 19.23 29.54 -169.99 -5.02 14.21 16 4 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 7 C -0.56 -13.30 8.47 -34.44 -0.29 -13.59 16 8 H 0.08 1.76 7.74 -52.49 -0.41 1.35 16 9 C 0.25 5.78 2.21 -69.09 -0.15 5.63 16 10 H 0.09 2.30 7.58 -51.93 -0.39 1.91 16 11 N -0.70 -13.08 4.97 -54.93 -0.27 -13.35 16 12 C 0.52 9.62 6.72 -10.98 -0.07 9.55 16 13 O -0.50 -11.63 15.09 -14.15 -0.21 -11.84 16 14 C 0.03 0.51 3.44 -27.64 -0.10 0.42 16 15 H 0.11 1.41 8.14 -51.93 -0.42 0.98 16 16 C 0.03 0.41 6.53 37.40 0.24 0.65 16 17 O -0.30 -3.75 10.42 -33.19 -0.35 -4.10 16 18 C 0.04 0.50 6.49 -39.14 -0.25 0.25 16 19 C -0.10 -0.98 9.96 -39.44 -0.39 -1.38 16 20 C -0.14 -1.34 9.98 -39.43 -0.39 -1.73 16 21 C 0.11 1.14 6.70 -39.28 -0.26 0.88 16 22 O -0.49 -4.41 13.50 -19.67 -0.27 -4.68 16 23 C -0.14 -1.74 9.90 -39.28 -0.39 -2.13 16 24 C 0.08 1.06 6.49 -39.15 -0.25 0.80 16 25 O -0.27 -4.52 9.62 -47.07 -0.45 -4.98 16 26 C 0.42 10.29 2.81 37.16 0.10 10.39 16 27 F -0.21 -4.94 16.94 2.25 0.04 -4.90 16 28 F -0.22 -5.40 15.68 2.25 0.04 -5.37 16 29 F -0.13 -3.62 12.90 2.25 0.03 -3.59 16 30 H 0.27 6.77 8.31 -40.82 -0.34 6.44 16 31 H 0.40 6.06 8.49 -40.82 -0.35 5.72 16 32 H 0.13 1.25 8.09 -51.93 -0.42 0.83 16 33 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.14 1.13 8.06 -52.48 -0.42 0.70 16 35 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 36 H 0.39 1.55 9.06 45.56 0.41 1.96 16 37 H 0.14 1.72 8.06 -52.48 -0.42 1.30 16 LS Contribution 334.08 15.07 5.03 5.03 Total: -1.00 -31.91 334.08 -5.61 -37.52 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -2.40 Total: 6.36 kcal Atomic # 6 Polarization: 13.58 SS G_CDS: -2.30 Total: 11.27 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: 0.25 Total: -34.95 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -1.28 Total: -25.59 kcal Atomic # 9 Polarization: -13.96 SS G_CDS: 0.10 Total: -13.86 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.21 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.91 -5.61 -37.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928804663.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -213.450 kcal (2) G-P(sol) polarization free energy of solvation -31.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -245.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -250.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds