Wall clock time and date at job start Wed Apr 1 2020 04:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 11 11 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 12 12 C 1.34780 * 120.00170 * 155.00354 * 11 9 7 13 13 O 1.21281 * 119.99806 * 359.97438 * 12 11 9 14 14 C 1.50700 * 120.00091 * 180.02562 * 12 11 9 15 15 H 1.09001 * 109.70218 * 305.57103 * 14 12 11 16 16 C 1.53470 * 109.70851 * 66.19915 * 14 12 11 17 17 O 1.43181 * 108.22301 * 179.45820 * 16 14 12 18 18 C 1.36210 * 116.68951 * 313.73768 * 17 16 14 19 19 C 1.38687 * 119.32671 * 197.17886 * 18 17 16 20 20 C 1.38177 * 120.14153 * 180.18384 * 19 18 17 21 21 C 1.38696 * 120.05038 * 359.96470 * 20 19 18 22 22 O 1.35979 * 119.99917 * 179.97438 * 21 20 19 23 23 C 1.38607 * 119.99765 * 359.97438 * 21 20 19 24 24 C 1.38684 * 120.03290 * 359.97059 * 23 21 20 25 25 O 1.36115 * 119.34823 * 180.15896 * 24 23 21 26 26 C 1.53000 * 109.47245 * 59.72060 * 9 7 2 27 27 F 1.39898 * 109.47151 * 59.99989 * 26 9 7 28 28 F 1.39899 * 109.47223 * 180.02562 * 26 9 7 29 29 F 1.39909 * 109.47130 * 300.00212 * 26 9 7 30 30 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 31 31 H 0.97002 * 120.00109 * 334.99085 * 11 9 7 32 32 H 1.08996 * 109.71317 * 299.14108 * 16 14 12 33 33 H 1.09002 * 109.71071 * 59.77583 * 16 14 12 34 34 H 1.08004 * 119.92740 * 0.16758 * 19 18 17 35 35 H 1.07997 * 119.97215 * 179.97438 * 20 19 18 36 36 H 0.96694 * 113.99965 * 90.00470 * 22 21 20 37 37 H 1.08006 * 119.98697 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6242 -2.5609 0.8844 11 7 2.2028 -3.6127 -0.0102 12 6 1.8366 -4.8145 0.4776 13 8 0.7191 -4.9740 0.9210 14 6 2.8161 -5.9598 0.4731 15 1 3.1986 -6.1123 -0.5361 16 6 3.9782 -5.6508 1.4268 17 8 4.8808 -6.7621 1.4076 18 6 4.3264 -8.0023 1.5069 19 6 5.1288 -9.0794 1.8524 20 6 4.5848 -10.3454 1.9542 21 6 3.2335 -10.5423 1.7115 22 8 2.6993 -11.7888 1.8115 23 6 2.4276 -9.4684 1.3671 24 6 2.9717 -8.1968 1.2656 25 8 2.1669 -7.1517 0.9296 26 6 0.3714 -2.5747 -1.2550 27 9 1.1757 -2.4955 -2.3969 28 9 -0.3286 -3.7859 -1.2602 29 9 -0.5377 -1.5112 -1.2503 30 1 -0.4850 0.8401 -0.0004 31 1 3.0967 -3.4851 -0.3647 32 1 4.4961 -4.7507 1.0956 33 1 3.5958 -5.5050 2.4371 34 1 6.1813 -8.9282 2.0422 35 1 5.2122 -11.1823 2.2231 36 1 2.3705 -12.0061 2.6944 37 1 1.3754 -9.6220 1.1777 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928804663.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:07 Heat of formation + Delta-G solvation = -274.267048 kcal Electronic energy + Delta-G solvation = -31120.353695 eV Core-core repulsion = 26027.965028 eV Total energy + Delta-G solvation = -5092.388667 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.46356 -48.10395 -47.76571 -42.59587 -40.76627 -39.69381 -38.38752 -36.93767 -36.60513 -34.62334 -32.66404 -31.47263 -30.25670 -29.01309 -26.65390 -26.33719 -24.05664 -23.82412 -22.52142 -21.61330 -20.16758 -19.71777 -19.22528 -18.94461 -18.74617 -18.63991 -18.18862 -17.76688 -17.11116 -16.90254 -16.55902 -16.43364 -15.97503 -15.83707 -15.58226 -15.31586 -15.05901 -14.95812 -14.94642 -14.60185 -14.51498 -14.43008 -14.33236 -14.07834 -14.01963 -13.90887 -13.34511 -13.09886 -12.79725 -12.67528 -12.54799 -12.22618 -12.01717 -11.91763 -11.62705 -11.60919 -10.99181 -10.71367 -10.25444 -9.74281 -9.09108 -8.23053 -6.54497 0.09437 0.16065 1.21693 1.36233 1.48764 1.50467 1.60857 1.92942 2.31730 2.39691 2.50076 2.50315 2.92118 2.99933 3.32522 3.37720 3.48106 3.60108 3.73999 3.81916 4.01773 4.09174 4.12901 4.22830 4.32244 4.40282 4.71407 4.82721 4.92934 5.06713 5.21434 5.31743 5.44126 5.47772 5.61909 5.72152 6.20599 6.45632 6.52620 6.83860 7.04277 7.19672 8.69501 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.021548 B = 0.002844 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.140864 B = 9844.574898 C =10691.261864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.015 3.985 3 Si 0.984 3.016 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.252 1.252 7 C -0.560 4.560 8 H 0.101 0.899 9 C 0.254 3.746 10 H 0.052 0.948 11 N -0.692 5.692 12 C 0.516 3.484 13 O -0.554 6.554 14 C 0.042 3.958 15 H 0.132 0.868 16 C 0.041 3.959 17 O -0.298 6.298 18 C 0.022 3.978 19 C -0.089 4.089 20 C -0.131 4.131 21 C 0.116 3.884 22 O -0.501 6.501 23 C -0.159 4.159 24 C 0.048 3.952 25 O -0.308 6.308 26 C 0.410 3.590 27 F -0.201 7.201 28 F -0.222 7.222 29 F -0.149 7.149 30 H 0.269 0.731 31 H 0.420 0.580 32 H 0.164 0.836 33 H 0.081 0.919 34 H 0.167 0.833 35 H 0.170 0.830 36 H 0.413 0.587 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.942 -15.234 4.150 20.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.191 4.191 3 Si 0.807 3.193 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.176 1.176 7 C -0.596 4.596 8 H 0.119 0.881 9 C 0.147 3.853 10 H 0.070 0.930 11 N -0.344 5.344 12 C 0.301 3.699 13 O -0.431 6.431 14 C -0.018 4.018 15 H 0.150 0.850 16 C -0.035 4.035 17 O -0.212 6.212 18 C -0.022 4.022 19 C -0.108 4.108 20 C -0.149 4.149 21 C 0.071 3.929 22 O -0.315 6.315 23 C -0.178 4.178 24 C 0.003 3.997 25 O -0.222 6.222 26 C 0.354 3.646 27 F -0.183 7.183 28 F -0.204 7.204 29 F -0.131 7.131 30 H 0.079 0.921 31 H 0.258 0.742 32 H 0.182 0.818 33 H 0.099 0.901 34 H 0.185 0.815 35 H 0.188 0.812 36 H 0.273 0.727 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 12.071 -15.218 3.864 19.805 hybrid contribution -0.672 1.148 -0.212 1.347 sum 11.399 -14.070 3.652 18.472 Atomic orbital electron populations 1.70536 1.07605 1.28246 1.44474 1.26010 0.95847 1.03775 0.93432 0.85145 0.78732 0.77024 0.78372 1.20148 1.21161 1.17580 1.21243 0.94839 0.87787 1.55758 0.88118 1.19423 0.88814 0.87102 0.89936 0.93036 1.45738 1.17709 1.08862 1.62138 1.20234 0.87922 0.83744 0.77978 1.90746 1.22834 1.83045 1.46488 1.22968 0.92878 0.84010 1.01911 0.85031 1.23694 0.89948 0.90117 0.99764 1.86361 1.33726 1.11730 1.89382 1.19241 0.91199 0.87118 1.04690 1.20661 1.01223 0.89381 0.99498 1.21504 0.94426 0.97518 1.01497 1.18030 0.91309 0.83689 0.99912 1.84803 1.80646 1.27523 1.38480 1.20785 1.01831 0.89029 1.06132 1.19021 0.89783 0.88339 1.02540 1.86375 1.33766 1.20922 1.81171 1.23401 0.80952 0.72381 0.87848 1.92995 1.74019 1.96107 1.55181 1.93072 1.81671 1.48571 1.97037 1.93391 1.68966 1.54410 1.96285 0.92147 0.74207 0.81839 0.90073 0.81545 0.81217 0.72712 0.84832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -47.10 9.49 21.45 0.20 -46.90 16 2 C 0.01 0.74 5.20 84.66 0.44 1.18 16 3 Si 0.98 38.67 29.54 68.60 2.03 40.70 16 4 H -0.28 -10.79 7.11 99.48 0.71 -10.08 16 5 H -0.29 -11.33 7.11 99.48 0.71 -10.63 16 6 H -0.25 -9.14 7.11 99.48 0.71 -8.44 16 7 C -0.56 -26.40 8.47 25.60 0.22 -26.18 16 8 H 0.10 4.22 7.74 -2.91 -0.02 4.19 16 9 C 0.25 12.05 2.21 44.25 0.10 12.15 16 10 H 0.05 2.84 7.58 -2.38 -0.02 2.82 16 11 N -0.69 -25.48 4.97 -446.10 -2.22 -27.70 16 12 C 0.52 19.56 6.72 87.66 0.59 20.15 16 13 O -0.55 -26.81 15.09 15.81 0.24 -26.57 16 14 C 0.04 1.23 3.44 30.01 0.10 1.33 16 15 H 0.13 3.20 8.14 -2.39 -0.02 3.18 16 16 C 0.04 0.91 6.53 72.14 0.47 1.39 16 17 O -0.30 -6.80 10.42 -83.73 -0.87 -7.68 16 18 C 0.02 0.53 6.49 22.55 0.15 0.68 16 19 C -0.09 -1.54 9.96 22.36 0.22 -1.32 16 20 C -0.13 -2.00 9.98 22.36 0.22 -1.78 16 21 C 0.12 2.21 6.70 22.47 0.15 2.36 16 22 O -0.50 -7.81 13.50 -93.31 -1.26 -9.07 16 23 C -0.16 -3.95 9.90 22.46 0.22 -3.73 16 24 C 0.05 1.35 6.49 22.55 0.15 1.50 16 25 O -0.31 -10.41 9.62 -69.08 -0.66 -11.08 16 26 C 0.41 20.70 2.81 71.98 0.20 20.90 16 27 F -0.20 -9.49 16.94 44.97 0.76 -8.73 16 28 F -0.22 -11.36 15.68 44.97 0.71 -10.65 16 29 F -0.15 -8.26 12.90 44.97 0.58 -7.68 16 30 H 0.27 13.78 8.31 -92.70 -0.77 13.01 16 31 H 0.42 11.98 8.49 -92.71 -0.79 11.19 16 32 H 0.16 2.59 8.09 -2.39 -0.02 2.57 16 33 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 35 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 36 H 0.41 2.27 9.06 -74.06 -0.67 1.60 16 37 H 0.13 3.41 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -71.06 334.08 2.46 -68.60 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -0.28 Total: 18.14 kcal Atomic # 6 Polarization: 25.39 SS G_CDS: 3.23 Total: 28.62 kcal Atomic # 7 Polarization: -72.59 SS G_CDS: -2.01 Total: -74.60 kcal Atomic # 8 Polarization: -51.84 SS G_CDS: -2.56 Total: -54.40 kcal Atomic # 9 Polarization: -29.11 SS G_CDS: 2.05 Total: -27.07 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 2.03 Total: 40.70 kcal Total: -71.06 2.46 -68.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928804663.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -205.663 kcal (2) G-P(sol) polarization free energy of solvation -71.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -276.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -274.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds