Wall clock time and date at job start Wed Apr 1 2020 04:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86807 * 120.00384 * 2 1 4 4 H 1.48501 * 109.46990 * 270.00064 * 3 2 1 5 5 H 1.48497 * 109.46732 * 30.00299 * 3 2 1 6 6 H 1.48497 * 109.47041 * 150.00049 * 3 2 1 7 7 C 1.38819 * 120.00003 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99689 * 0.02562 * 7 2 1 9 9 N 1.36937 * 120.00320 * 179.97438 * 7 2 1 10 10 C 1.46493 * 120.00068 * 179.97438 * 9 7 2 11 11 H 1.09005 * 110.26827 * 35.62657 * 10 9 7 12 12 C 1.51372 * 110.30545 * 273.54920 * 10 9 7 13 13 C 1.38498 * 130.38687 * 78.14854 * 12 10 9 14 14 C 1.38101 * 120.21492 * 180.02562 * 13 12 10 15 15 C 1.38255 * 119.93270 * 359.97438 * 14 13 12 16 16 C 1.38101 * 119.93640 * 359.97438 * 15 14 13 17 17 C 1.38207 * 109.75868 * 258.16911 * 12 10 9 18 18 C 1.51368 * 109.76303 * 359.97438 * 17 12 10 19 19 C 1.54349 * 105.25468 * 342.76190 * 18 17 12 20 20 H 1.08998 * 110.82022 * 144.61405 * 19 18 17 21 21 N 1.46490 * 110.82559 * 268.17112 * 19 18 17 22 22 C 1.34772 * 120.00227 * 273.54732 * 21 19 18 23 23 O 1.21592 * 119.99910 * 0.02562 * 22 21 19 24 24 C 1.47515 * 120.00362 * 179.97438 * 22 21 19 25 25 C 1.36788 * 126.93098 * 179.97438 * 24 22 21 26 26 C 1.41406 * 103.84030 * 179.97438 * 25 24 22 27 27 Cl 1.73598 * 126.72672 * 179.97438 * 26 25 24 28 28 N 1.30227 * 106.54986 * 0.02562 * 26 25 24 29 29 O 1.20880 * 111.95620 * 359.69270 * 28 26 25 30 30 H 0.97005 * 119.99904 * 359.97438 * 1 2 3 31 31 H 0.97005 * 119.99735 * 0.02562 * 9 7 2 32 32 H 1.08007 * 119.89166 * 0.05252 * 13 12 10 33 33 H 1.08000 * 120.03440 * 180.02562 * 14 13 12 34 34 H 1.07996 * 120.02798 * 180.02562 * 15 14 13 35 35 H 1.08004 * 119.89428 * 180.02562 * 16 15 14 36 36 H 1.09002 * 110.30467 * 101.73743 * 18 17 12 37 37 H 1.08997 * 110.30356 * 223.79407 * 18 17 12 38 38 H 0.96999 * 120.00297 * 93.54264 * 21 19 18 39 39 H 1.08003 * 128.08034 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0014 9 7 3.3796 -1.2023 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 1 3.5807 -3.2137 -0.5963 12 6 4.2990 -2.9695 1.4159 13 6 3.4119 -3.6066 2.2675 14 6 3.8105 -3.9749 3.5375 15 6 5.0992 -3.7076 3.9607 16 6 5.9856 -3.0734 3.1126 17 6 5.5872 -2.7019 1.8391 18 6 6.3543 -2.0057 0.7355 19 6 5.5428 -2.2680 -0.5510 20 1 5.5843 -1.4067 -1.2177 21 7 6.0177 -3.4766 -1.2290 22 6 7.0447 -3.4021 -2.0986 23 8 7.5774 -2.3317 -2.3199 24 6 7.5233 -4.6192 -2.7809 25 6 8.5470 -4.7065 -3.6840 26 6 8.5855 -6.0795 -4.0200 27 17 9.6764 -6.8460 -5.1318 28 7 7.6415 -6.6562 -3.3328 29 8 7.0444 -5.8692 -2.6362 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3622 -0.0007 32 1 2.4052 -3.8165 1.9372 33 1 3.1164 -4.4719 4.1990 34 1 5.4127 -3.9953 4.9533 35 1 6.9923 -2.8652 3.4438 36 1 6.4141 -0.9355 0.9333 37 1 7.3545 -2.4294 0.6446 38 1 5.5931 -4.3306 -1.0522 39 1 9.1789 -3.9123 -4.0535 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960327212.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:25 Heat of formation + Delta-G solvation = 57.553829 kcal Electronic energy + Delta-G solvation = -27162.718718 eV Core-core repulsion = 23099.577541 eV Total energy + Delta-G solvation = -4063.141178 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -46.39942 -41.67302 -40.33032 -38.27982 -37.65988 -35.92947 -34.95183 -34.29719 -33.24475 -32.88753 -31.59023 -29.31294 -27.89472 -25.90495 -24.85091 -24.54158 -23.33662 -22.28380 -21.68033 -21.53605 -20.19238 -19.66485 -19.19095 -17.72713 -17.54736 -17.13057 -16.55152 -16.43142 -16.40866 -15.77341 -15.70947 -15.62585 -15.25891 -14.92792 -14.68785 -14.31282 -14.25661 -13.99474 -13.89698 -13.62810 -13.54894 -13.06186 -12.86543 -12.67376 -12.41196 -12.25262 -12.17866 -12.00681 -11.80469 -11.67436 -11.62640 -11.26167 -11.08030 -11.02342 -10.38840 -9.64005 -9.46974 -9.31595 -8.02332 -5.37471 -0.52224 0.24807 0.54502 0.58019 0.59767 1.24670 1.39445 1.41709 1.48140 1.73042 1.95121 2.48221 2.91302 2.97459 3.28814 3.31317 3.48090 3.60965 3.67074 3.75531 3.85888 4.01680 4.15530 4.26454 4.31939 4.44237 4.54001 4.64876 4.72882 4.79502 4.87473 4.94084 5.20447 5.23907 5.32536 5.65226 5.71804 5.74600 5.88270 6.11815 6.19469 6.23036 6.61667 6.78701 7.04457 7.76796 7.95614 9.18356 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.011614 B = 0.002941 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.382781 B = 9518.932335 C =10827.899039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.056 4.056 3 Si 0.945 3.055 4 H -0.277 1.277 5 H -0.299 1.299 6 H -0.251 1.251 7 C -0.223 4.223 8 H 0.062 0.938 9 N -0.733 5.733 10 C 0.210 3.790 11 H 0.066 0.934 12 C -0.119 4.119 13 C -0.109 4.109 14 C -0.130 4.130 15 C -0.121 4.121 16 C -0.115 4.115 17 C -0.101 4.101 18 C -0.081 4.081 19 C 0.145 3.855 20 H 0.103 0.897 21 N -0.686 5.686 22 C 0.615 3.385 23 O -0.530 6.530 24 C -0.069 4.069 25 C -0.125 4.125 26 C 0.047 3.953 27 Cl 0.047 6.953 28 N -0.342 5.342 29 O 0.140 5.860 30 H 0.257 0.743 31 H 0.368 0.632 32 H 0.100 0.900 33 H 0.136 0.864 34 H 0.149 0.851 35 H 0.140 0.860 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.418 0.582 39 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.778 -12.259 -1.829 25.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.248 4.248 3 Si 0.772 3.228 4 H -0.203 1.203 5 H -0.226 1.226 6 H -0.176 1.176 7 C -0.354 4.354 8 H 0.080 0.920 9 N -0.375 5.375 10 C 0.101 3.899 11 H 0.084 0.916 12 C -0.121 4.121 13 C -0.128 4.128 14 C -0.148 4.148 15 C -0.139 4.139 16 C -0.133 4.133 17 C -0.102 4.102 18 C -0.119 4.119 19 C 0.039 3.961 20 H 0.121 0.879 21 N -0.336 5.336 22 C 0.398 3.602 23 O -0.407 6.407 24 C -0.135 4.135 25 C -0.147 4.147 26 C -0.135 4.135 27 Cl 0.075 6.925 28 N -0.043 5.043 29 O 0.062 5.938 30 H 0.066 0.934 31 H 0.202 0.798 32 H 0.118 0.882 33 H 0.154 0.846 34 H 0.167 0.833 35 H 0.158 0.842 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.256 0.744 39 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 21.606 -12.887 -2.050 25.241 hybrid contribution -0.199 1.234 -0.229 1.271 sum 21.408 -11.654 -2.279 24.480 Atomic orbital electron populations 1.69859 1.07045 1.26609 1.59452 1.25391 0.95950 1.00925 1.02564 0.85564 0.78828 0.80202 0.78176 1.20296 1.22609 1.17579 1.18906 0.81851 0.93488 1.41156 0.91991 1.42523 1.02627 1.02796 1.89533 1.19922 0.90678 0.88243 0.91099 0.91645 1.21393 0.94476 0.97569 0.98709 1.20743 0.98610 0.98780 0.94624 1.21274 0.97340 1.00916 0.95306 1.21305 0.93175 0.99044 1.00394 1.20856 1.00760 0.99285 0.92376 1.20654 0.94862 0.99039 0.95617 1.21388 0.98814 1.01069 0.90608 1.21760 0.92663 0.87880 0.93792 0.87885 1.45625 1.33386 1.12429 1.42191 1.16388 0.80262 0.84888 0.78655 1.90903 1.57831 1.27476 1.64483 1.23985 0.99480 0.86756 1.03270 1.23023 0.98799 0.95858 0.97052 1.24246 0.97288 0.91819 1.00183 1.98438 1.57203 1.80646 1.56256 1.73867 1.07736 1.16538 1.06110 1.85073 1.46557 1.13821 1.48348 0.93366 0.79833 0.88206 0.84631 0.83344 0.84190 0.89034 0.88827 0.74428 0.76800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.33 13.97 21.65 0.30 -61.02 16 2 C -0.06 -3.22 5.50 84.87 0.47 -2.75 16 3 Si 0.94 44.27 27.74 68.60 1.90 46.17 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 5 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 6 H -0.25 -10.61 6.52 99.48 0.65 -9.96 16 7 C -0.22 -12.04 10.44 84.04 0.88 -11.17 16 8 H 0.06 3.66 8.06 -2.91 -0.02 3.64 16 9 N -0.73 -31.88 4.96 -322.84 -1.60 -33.49 16 10 C 0.21 7.22 3.11 45.01 0.14 7.36 16 11 H 0.07 2.32 8.02 -2.38 -0.02 2.30 16 12 C -0.12 -3.90 5.76 -19.60 -0.11 -4.01 16 13 C -0.11 -3.64 10.04 22.30 0.22 -3.41 16 14 C -0.13 -3.55 10.05 22.24 0.22 -3.33 16 15 C -0.12 -2.81 10.05 22.24 0.22 -2.59 16 16 C -0.11 -2.74 10.04 22.30 0.22 -2.52 16 17 C -0.10 -2.80 6.14 -19.60 -0.12 -2.92 16 18 C -0.08 -2.01 6.47 30.52 0.20 -1.81 16 19 C 0.14 3.95 2.95 46.00 0.14 4.09 16 20 H 0.10 3.07 7.63 -2.39 -0.02 3.05 16 21 N -0.69 -15.21 5.14 -440.95 -2.27 -17.47 16 22 C 0.61 13.77 7.82 86.69 0.68 14.45 16 23 O -0.53 -14.62 16.65 -4.00 -0.07 -14.68 16 24 C -0.07 -1.31 7.29 24.38 0.18 -1.13 16 25 C -0.12 -2.04 10.96 22.71 0.25 -1.79 16 26 C 0.05 0.84 7.97 85.71 0.68 1.53 16 27 Cl 0.05 0.68 29.33 -2.72 -0.08 0.60 16 28 N -0.34 -7.13 12.05 -51.04 -0.61 -7.75 16 29 O 0.14 2.73 11.04 65.81 0.73 3.45 16 30 H 0.26 15.46 8.31 -92.70 -0.77 14.69 16 31 H 0.37 15.52 5.66 -92.70 -0.52 15.00 16 32 H 0.10 3.64 8.06 -2.91 -0.02 3.62 16 33 H 0.14 3.08 8.06 -2.91 -0.02 3.05 16 34 H 0.15 2.47 8.06 -2.91 -0.02 2.44 16 35 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 36 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.09 2.01 8.09 -2.39 -0.02 1.99 16 38 H 0.42 7.93 8.41 -92.71 -0.78 7.15 16 39 H 0.22 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -67.94 358.80 2.34 -65.60 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: -0.23 Total: 28.59 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: 4.27 Total: -10.01 kcal Atomic # 7 Polarization: -115.55 SS G_CDS: -4.18 Total: -119.73 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.66 Total: -11.23 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.90 Total: 46.17 kcal Atomic # 17 Polarization: 0.68 SS G_CDS: -0.08 Total: 0.60 kcal Total: -67.94 2.34 -65.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960327212.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.154 kcal (2) G-P(sol) polarization free energy of solvation -67.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds