Wall clock time and date at job start Wed Apr 1 2020 04:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30555 * 122.98376 * 2 1 4 4 C 1.30252 * 117.34709 * 180.29179 * 3 2 1 5 5 C 1.47944 * 124.75046 * 179.72145 * 4 3 2 6 6 N 1.32693 * 119.22866 * 179.74916 * 5 4 3 7 7 C 1.32134 * 120.74115 * 179.75230 * 6 5 4 8 8 C 1.38760 * 119.19673 * 0.51716 * 7 6 5 9 9 C 1.38748 * 118.57030 * 359.73762 * 8 7 6 10 10 N 1.32136 * 119.20605 * 0.02562 * 9 8 7 11 11 S 1.70929 * 110.50391 * 359.73811 * 4 3 2 12 12 C 1.36953 * 122.99104 * 179.81366 * 2 1 3 13 13 C 1.46796 * 126.13539 * 0.02562 * 12 2 1 14 14 O 1.21682 * 119.99981 * 359.70884 * 13 12 2 15 15 N 1.34777 * 120.00027 * 179.71402 * 13 12 2 16 16 C 1.46506 * 119.99873 * 180.02562 * 15 13 12 17 17 C 1.50699 * 109.46928 * 179.97438 * 16 15 13 18 18 O 1.21297 * 119.99980 * 359.97438 * 17 16 15 19 19 N 1.34779 * 120.00037 * 179.97438 * 17 16 15 20 20 C 1.37097 * 119.99944 * 179.97438 * 19 17 16 21 21 H 1.08003 * 120.00055 * 0.02562 * 20 19 17 22 22 C 1.38948 * 119.99682 * 180.02562 * 20 19 17 23 23 N 1.31418 * 119.99941 * 180.02562 * 22 20 19 24 24 Si 1.86805 * 120.00327 * 0.02562 * 22 20 19 25 25 H 1.48506 * 109.46777 * 89.99619 * 24 22 20 26 26 H 1.48490 * 109.47136 * 209.99926 * 24 22 20 27 27 H 1.48496 * 109.46819 * 330.00313 * 24 22 20 28 28 H 1.09002 * 109.47375 * 270.18270 * 1 2 3 29 29 H 1.09000 * 109.47390 * 30.18146 * 1 2 3 30 30 H 1.09001 * 109.47025 * 150.18333 * 1 2 3 31 31 H 1.07998 * 120.40073 * 180.27551 * 7 6 5 32 32 H 1.07994 * 120.70932 * 179.76915 * 8 7 6 33 33 H 1.08001 * 120.39361 * 179.97438 * 9 8 7 34 34 H 0.96999 * 120.00047 * 359.97438 * 15 13 12 35 35 H 1.09004 * 109.47073 * 299.99562 * 16 15 13 36 36 H 1.09000 * 109.47212 * 59.99645 * 16 15 13 37 37 H 0.96996 * 119.99844 * 0.02562 * 19 17 16 38 38 H 0.97002 * 120.00138 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2177 1.0951 0.0000 4 6 3.5140 0.9672 -0.0059 5 6 4.4725 2.0941 -0.0128 6 7 5.7744 1.8373 -0.0134 7 6 6.6568 2.8208 -0.0243 8 6 6.2072 4.1335 -0.0244 9 6 4.8395 4.3665 -0.0184 10 7 4.0102 3.3378 -0.0124 11 16 3.9525 -0.6849 -0.0050 12 6 2.2527 -1.1487 0.0037 13 6 1.7297 -2.5203 0.0077 14 8 0.5283 -2.7133 0.0132 15 7 2.5801 -3.5659 0.0053 16 6 2.0581 -4.9347 0.0087 17 6 3.2067 -5.9103 0.0044 18 8 4.3489 -5.5023 -0.0013 19 7 2.9646 -7.2362 0.0070 20 6 4.0096 -8.1237 0.0027 21 1 5.0266 -7.7605 -0.0025 22 6 3.7600 -9.4906 0.0048 23 7 4.7616 -10.3414 0.0011 24 14 2.0008 -10.1190 0.0130 25 1 1.5286 -10.2865 -1.3850 26 1 1.9456 -11.4267 0.7142 27 1 1.1299 -9.1431 0.7160 28 1 -0.3634 0.0033 1.0277 29 1 -0.3634 0.8883 -0.5166 30 1 -0.3633 -0.8916 -0.5110 31 1 7.7151 2.6055 -0.0292 32 1 6.9070 4.9561 -0.0295 33 1 4.4573 5.3767 -0.0179 34 1 3.5378 -3.4120 0.0006 35 1 1.4521 -5.0903 0.9013 36 1 1.4450 -5.0920 -0.8787 37 1 2.0512 -7.5625 0.0113 38 1 4.5874 -11.2957 0.0030 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117459524.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:37 Heat of formation + Delta-G solvation = 35.371045 kcal Electronic energy + Delta-G solvation = -25780.065101 eV Core-core repulsion = 21750.298463 eV Total energy + Delta-G solvation = -4029.766638 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.49655 -40.39871 -39.31870 -38.24539 -34.66857 -34.29292 -33.86600 -33.58656 -31.84921 -31.33321 -29.34454 -27.28302 -26.68398 -25.09529 -24.39828 -23.15706 -21.63383 -20.02258 -19.49590 -18.96759 -18.61229 -17.80867 -17.36444 -16.70711 -16.17269 -15.99334 -15.62830 -15.47040 -15.24356 -14.96049 -14.71685 -14.52911 -14.08848 -13.90178 -13.82491 -13.74125 -13.18864 -12.67443 -12.58783 -12.55686 -12.22114 -12.17693 -11.58530 -11.40917 -11.40347 -11.26581 -10.67110 -10.50881 -10.28802 -10.09344 -9.89289 -9.75759 -9.73662 -9.66674 -9.11558 -8.83369 -8.81495 -8.34257 -6.43812 -3.96662 -0.55321 0.58021 0.63266 0.81699 1.35243 2.24330 2.81432 2.96892 3.01675 3.04651 3.07041 3.11957 3.34861 3.50889 3.65709 4.00742 4.05987 4.20340 4.43656 4.46176 4.53953 4.69964 4.74057 4.90515 5.10600 5.21462 5.53172 5.59058 5.61625 5.70037 5.72535 5.73269 5.74784 6.16280 6.38646 6.42161 7.27362 7.39333 7.48611 7.53968 7.95252 8.10872 8.40971 8.78070 9.25852 9.58386 10.68126 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.019143 B = 0.002173 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.336617 B =12880.948643 C =14322.831377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.145 3.855 3 N -0.432 5.432 4 C 0.070 3.930 5 C 0.385 3.615 6 N -0.506 5.506 7 C 0.157 3.843 8 C -0.221 4.221 9 C 0.151 3.849 10 N -0.476 5.476 11 S 0.286 5.714 12 C -0.299 4.299 13 C 0.597 3.403 14 O -0.526 6.526 15 N -0.701 5.701 16 C 0.107 3.893 17 C 0.436 3.564 18 O -0.578 6.578 19 N -0.574 5.574 20 C -0.310 4.310 21 H 0.122 0.878 22 C 0.045 3.955 23 N -0.872 5.872 24 Si 0.879 3.121 25 H -0.268 1.268 26 H -0.274 1.274 27 H -0.267 1.267 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.179 0.821 32 H 0.155 0.845 33 H 0.176 0.824 34 H 0.410 0.590 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.375 0.625 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.456 27.482 -0.106 27.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.003 3.997 3 N -0.149 5.149 4 C -0.202 4.202 5 C 0.117 3.883 6 N -0.221 5.221 7 C -0.009 4.009 8 C -0.244 4.244 9 C -0.016 4.016 10 N -0.190 5.190 11 S 0.545 5.455 12 C -0.425 4.425 13 C 0.382 3.618 14 O -0.405 6.405 15 N -0.355 5.355 16 C -0.021 4.021 17 C 0.222 3.778 18 O -0.462 6.462 19 N -0.211 5.211 20 C -0.439 4.439 21 H 0.140 0.860 22 C -0.159 4.159 23 N -0.511 5.511 24 Si 0.705 3.295 25 H -0.194 1.194 26 H -0.200 1.200 27 H -0.192 1.192 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.120 0.880 31 H 0.196 0.804 32 H 0.173 0.827 33 H 0.193 0.807 34 H 0.248 0.752 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.208 0.792 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.247 26.570 -0.095 26.599 hybrid contribution -0.939 0.258 0.045 0.975 sum -2.186 26.828 -0.050 26.917 Atomic orbital electron populations 1.20647 0.85381 1.04598 1.03869 1.20927 0.98724 0.84199 0.95803 1.66111 1.03168 1.31378 1.14195 1.23992 0.92493 0.96116 1.07601 1.19673 0.86880 0.88463 0.93315 1.68223 1.01968 1.38049 1.13820 1.23277 1.00016 0.87921 0.89701 1.23132 0.98508 0.99807 1.02920 1.23409 0.89694 0.98662 0.89866 1.68453 1.40086 0.98847 1.11620 1.84255 1.02521 0.97867 1.60884 1.26315 0.97441 0.99369 1.19374 1.16548 0.86073 0.82134 0.77082 1.90777 1.14106 1.84858 1.50720 1.45597 1.10865 1.05137 1.73920 1.21055 0.96238 0.80948 1.03836 1.19575 0.89677 0.83222 0.85375 1.90550 1.22351 1.77598 1.55736 1.42109 1.08661 1.05161 1.65196 1.19444 0.89528 0.86193 1.48728 0.86011 1.25078 0.98102 0.95651 0.97077 1.69619 1.30725 1.02857 1.47921 0.86668 0.83955 0.79699 0.79162 1.19355 1.19950 1.19205 0.89963 0.90606 0.87993 0.80398 0.82748 0.80692 0.75157 0.89168 0.89169 0.79193 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.01 9.71 36.01 0.35 -0.66 16 2 C 0.15 2.00 6.83 -83.60 -0.57 1.43 16 3 N -0.43 -6.15 10.41 -8.18 -0.09 -6.24 16 4 C 0.07 0.94 7.23 -14.25 -0.10 0.84 16 5 C 0.38 4.68 7.59 -156.94 -1.19 3.49 16 6 N -0.51 -5.29 10.05 -11.21 -0.11 -5.40 16 7 C 0.16 1.01 11.30 -17.23 -0.19 0.82 16 8 C -0.22 -1.03 10.17 -39.20 -0.40 -1.43 16 9 C 0.15 1.01 11.30 -17.23 -0.19 0.81 16 10 N -0.48 -5.34 10.28 -11.21 -0.12 -5.45 16 11 S 0.29 3.61 21.98 -107.50 -2.36 1.24 16 12 C -0.30 -4.22 6.53 -36.59 -0.24 -4.46 16 13 C 0.60 9.33 7.78 -12.80 -0.10 9.23 16 14 O -0.53 -8.91 14.33 5.21 0.07 -8.83 16 15 N -0.70 -11.35 5.52 -62.76 -0.35 -11.70 16 16 C 0.11 1.79 6.15 -5.19 -0.03 1.76 16 17 C 0.44 9.39 7.85 -10.99 -0.09 9.30 16 18 O -0.58 -14.38 15.24 5.54 0.08 -14.30 16 19 N -0.57 -13.07 5.09 -10.96 -0.06 -13.13 16 20 C -0.31 -8.43 10.16 -14.93 -0.15 -8.58 16 21 H 0.12 3.77 7.39 -52.48 -0.39 3.38 16 22 C 0.05 1.20 5.50 -17.47 -0.10 1.10 16 23 N -0.87 -24.63 13.96 55.50 0.77 -23.86 16 24 Si 0.88 18.71 27.74 -169.99 -4.71 13.99 16 25 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 26 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 27 H -0.27 -5.17 6.52 56.52 0.37 -4.80 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.10 1.28 6.06 -51.93 -0.31 0.96 16 31 H 0.18 0.52 8.06 -52.49 -0.42 0.10 16 32 H 0.15 0.15 8.06 -52.49 -0.42 -0.27 16 33 H 0.18 0.55 8.06 -52.49 -0.42 0.13 16 34 H 0.41 6.70 6.62 -40.82 -0.27 6.43 16 35 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 36 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.37 7.48 5.76 -40.82 -0.24 7.25 16 38 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 354.32 15.07 5.34 5.34 Total: -1.00 -34.73 354.32 -7.86 -42.59 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -3.34 Total: 12.07 kcal Atomic # 6 Polarization: 16.66 SS G_CDS: -3.01 Total: 13.66 kcal Atomic # 7 Polarization: -65.83 SS G_CDS: 0.06 Total: -65.77 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: 0.16 Total: -23.13 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -4.71 Total: 13.99 kcal Atomic # 16 Polarization: 3.61 SS G_CDS: -2.36 Total: 1.24 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.73 -7.86 -42.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117459524.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.960 kcal (2) G-P(sol) polarization free energy of solvation -34.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds