Wall clock time and date at job start Wed Apr 1 2020 04:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30555 * 122.98376 * 2 1 4 4 C 1.30252 * 117.34709 * 180.29179 * 3 2 1 5 5 C 1.47944 * 124.75046 * 179.72145 * 4 3 2 6 6 N 1.32693 * 119.22866 * 179.74916 * 5 4 3 7 7 C 1.32134 * 120.74115 * 179.75230 * 6 5 4 8 8 C 1.38760 * 119.19673 * 0.51716 * 7 6 5 9 9 C 1.38748 * 118.57030 * 359.73762 * 8 7 6 10 10 N 1.32136 * 119.20605 * 0.02562 * 9 8 7 11 11 S 1.70929 * 110.50391 * 359.73811 * 4 3 2 12 12 C 1.36953 * 122.99104 * 179.81366 * 2 1 3 13 13 C 1.46796 * 126.13539 * 0.02562 * 12 2 1 14 14 O 1.21682 * 119.99981 * 359.70884 * 13 12 2 15 15 N 1.34777 * 120.00027 * 179.71402 * 13 12 2 16 16 C 1.46506 * 119.99873 * 180.02562 * 15 13 12 17 17 C 1.50699 * 109.46928 * 179.97438 * 16 15 13 18 18 O 1.21297 * 119.99980 * 359.97438 * 17 16 15 19 19 N 1.34779 * 120.00037 * 179.97438 * 17 16 15 20 20 C 1.37097 * 119.99944 * 179.97438 * 19 17 16 21 21 H 1.08003 * 120.00055 * 0.02562 * 20 19 17 22 22 C 1.38948 * 119.99682 * 180.02562 * 20 19 17 23 23 N 1.31418 * 119.99941 * 180.02562 * 22 20 19 24 24 Si 1.86805 * 120.00327 * 0.02562 * 22 20 19 25 25 H 1.48506 * 109.46777 * 89.99619 * 24 22 20 26 26 H 1.48490 * 109.47136 * 209.99926 * 24 22 20 27 27 H 1.48496 * 109.46819 * 330.00313 * 24 22 20 28 28 H 1.09002 * 109.47375 * 270.18270 * 1 2 3 29 29 H 1.09000 * 109.47390 * 30.18146 * 1 2 3 30 30 H 1.09001 * 109.47025 * 150.18333 * 1 2 3 31 31 H 1.07998 * 120.40073 * 180.27551 * 7 6 5 32 32 H 1.07994 * 120.70932 * 179.76915 * 8 7 6 33 33 H 1.08001 * 120.39361 * 179.97438 * 9 8 7 34 34 H 0.96999 * 120.00047 * 359.97438 * 15 13 12 35 35 H 1.09004 * 109.47073 * 299.99562 * 16 15 13 36 36 H 1.09000 * 109.47212 * 59.99645 * 16 15 13 37 37 H 0.96996 * 119.99844 * 0.02562 * 19 17 16 38 38 H 0.97002 * 120.00138 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2177 1.0951 0.0000 4 6 3.5140 0.9672 -0.0059 5 6 4.4725 2.0941 -0.0128 6 7 5.7744 1.8373 -0.0134 7 6 6.6568 2.8208 -0.0243 8 6 6.2072 4.1335 -0.0244 9 6 4.8395 4.3665 -0.0184 10 7 4.0102 3.3378 -0.0124 11 16 3.9525 -0.6849 -0.0050 12 6 2.2527 -1.1487 0.0037 13 6 1.7297 -2.5203 0.0077 14 8 0.5283 -2.7133 0.0132 15 7 2.5801 -3.5659 0.0053 16 6 2.0581 -4.9347 0.0087 17 6 3.2067 -5.9103 0.0044 18 8 4.3489 -5.5023 -0.0013 19 7 2.9646 -7.2362 0.0070 20 6 4.0096 -8.1237 0.0027 21 1 5.0266 -7.7605 -0.0025 22 6 3.7600 -9.4906 0.0048 23 7 4.7616 -10.3414 0.0011 24 14 2.0008 -10.1190 0.0130 25 1 1.5286 -10.2865 -1.3850 26 1 1.9456 -11.4267 0.7142 27 1 1.1299 -9.1431 0.7160 28 1 -0.3634 0.0033 1.0277 29 1 -0.3634 0.8883 -0.5166 30 1 -0.3633 -0.8916 -0.5110 31 1 7.7151 2.6055 -0.0292 32 1 6.9070 4.9561 -0.0295 33 1 4.4573 5.3767 -0.0179 34 1 3.5378 -3.4120 0.0006 35 1 1.4521 -5.0903 0.9013 36 1 1.4450 -5.0920 -0.8787 37 1 2.0512 -7.5625 0.0113 38 1 4.5874 -11.2957 0.0030 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117459524.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:36 Heat of formation + Delta-G solvation = 7.395602 kcal Electronic energy + Delta-G solvation = -25781.278207 eV Core-core repulsion = 21750.298463 eV Total energy + Delta-G solvation = -4030.979744 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.14358 -41.49841 -40.68165 -39.79694 -36.34105 -35.47238 -34.91618 -34.32680 -33.84188 -32.16697 -30.57889 -28.62458 -27.51924 -26.23116 -25.61464 -23.91918 -22.84033 -21.54956 -21.00683 -20.29054 -19.83012 -18.75312 -18.23263 -17.85444 -17.27443 -17.08220 -16.76776 -16.66904 -16.55908 -16.30731 -15.81503 -15.62019 -15.14779 -15.14053 -14.88031 -14.69426 -14.47110 -14.34403 -14.05871 -13.69886 -13.54692 -13.49025 -12.96720 -12.44418 -12.44132 -12.09617 -12.07028 -11.99888 -11.58355 -11.42564 -11.19727 -10.97388 -10.68504 -10.64018 -10.39210 -10.38452 -10.29980 -9.75308 -8.45324 -6.07583 -1.45358 -0.16150 -0.10534 0.06789 0.35442 1.23973 1.31686 1.34692 1.44668 1.75573 1.77364 1.91076 2.09560 2.21020 2.71049 2.81433 3.04806 3.10783 3.41746 3.58200 3.65667 3.78402 3.86915 4.00465 4.10592 4.36215 4.38294 4.38789 4.57521 4.72471 4.77322 4.85220 5.01182 5.27586 5.30200 5.47826 5.87771 5.88842 6.18298 6.35761 6.47709 6.77788 6.85331 6.85990 7.28097 7.76935 8.70914 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.019143 B = 0.002173 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.336617 B =12880.948643 C =14322.831377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.147 3.853 3 N -0.454 5.454 4 C 0.075 3.925 5 C 0.349 3.651 6 N -0.527 5.527 7 C 0.143 3.857 8 C -0.187 4.187 9 C 0.136 3.864 10 N -0.506 5.506 11 S 0.298 5.702 12 C -0.324 4.324 13 C 0.604 3.396 14 O -0.539 6.539 15 N -0.707 5.707 16 C 0.117 3.883 17 C 0.443 3.557 18 O -0.615 6.615 19 N -0.575 5.575 20 C -0.331 4.331 21 H 0.064 0.936 22 C -0.009 4.009 23 N -0.925 5.925 24 Si 0.959 3.041 25 H -0.256 1.256 26 H -0.274 1.274 27 H -0.231 1.231 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.213 0.787 32 H 0.202 0.798 33 H 0.210 0.790 34 H 0.408 0.592 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.393 0.607 38 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.851 29.795 -0.038 29.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.004 3.996 3 N -0.170 5.170 4 C -0.197 4.197 5 C 0.081 3.919 6 N -0.243 5.243 7 C -0.023 4.023 8 C -0.209 4.209 9 C -0.029 4.029 10 N -0.222 5.222 11 S 0.557 5.443 12 C -0.450 4.450 13 C 0.390 3.610 14 O -0.419 6.419 15 N -0.361 5.361 16 C -0.009 4.009 17 C 0.230 3.770 18 O -0.501 6.501 19 N -0.215 5.215 20 C -0.460 4.460 21 H 0.082 0.918 22 C -0.209 4.209 23 N -0.565 5.565 24 Si 0.779 3.221 25 H -0.181 1.181 26 H -0.199 1.199 27 H -0.154 1.154 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.229 0.771 32 H 0.219 0.781 33 H 0.226 0.774 34 H 0.246 0.754 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.229 0.771 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.646 28.917 -0.025 29.037 hybrid contribution -0.236 -0.156 0.018 0.284 sum -2.883 28.760 -0.008 28.904 Atomic orbital electron populations 1.20669 0.84189 1.04798 1.04464 1.21265 0.99611 0.84047 0.94643 1.66186 1.03666 1.31514 1.15677 1.24461 0.92703 0.96987 1.05541 1.19539 0.87330 0.88572 0.96488 1.68194 1.01768 1.39952 1.14399 1.24027 1.00979 0.88219 0.89027 1.23636 0.98360 1.00340 0.98583 1.24115 0.90559 0.98968 0.89268 1.68381 1.41949 0.99341 1.12507 1.84132 1.01706 0.97679 1.60830 1.26142 0.98285 0.98724 1.21818 1.16588 0.85724 0.82346 0.76359 1.90761 1.14501 1.85185 1.51460 1.45627 1.10871 1.05105 1.74489 1.21024 0.94028 0.79754 1.06137 1.20471 0.90488 0.83462 0.82575 1.90540 1.24704 1.78377 1.56469 1.41898 1.08468 1.05058 1.66073 1.19024 0.88545 0.87659 1.50759 0.91832 1.26088 1.03954 0.95151 0.95696 1.69784 1.34022 1.03500 1.49164 0.85442 0.77175 0.79406 0.80090 1.18071 1.19933 1.15384 0.89060 0.89304 0.88744 0.77062 0.78065 0.77389 0.75414 0.86789 0.86698 0.77090 0.90922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.88 9.71 71.24 0.69 -1.19 16 2 C 0.15 4.05 6.83 42.45 0.29 4.34 16 3 N -0.45 -13.06 10.41 -179.80 -1.87 -14.93 16 4 C 0.08 2.05 7.23 87.50 0.63 2.68 16 5 C 0.35 8.45 7.59 137.37 1.04 9.49 16 6 N -0.53 -10.65 10.05 -189.37 -1.90 -12.55 16 7 C 0.14 1.48 11.30 84.77 0.96 2.43 16 8 C -0.19 -1.05 10.17 22.52 0.23 -0.82 16 9 C 0.14 1.48 11.30 84.77 0.96 2.44 16 10 N -0.51 -10.97 10.28 -189.38 -1.95 -12.92 16 11 S 0.30 7.69 21.98 -56.49 -1.24 6.45 16 12 C -0.32 -9.21 6.53 24.21 0.16 -9.05 16 13 C 0.60 18.54 7.78 86.48 0.67 19.22 16 14 O -0.54 -17.64 14.33 -4.29 -0.06 -17.70 16 15 N -0.71 -22.49 5.52 -470.69 -2.60 -25.09 16 16 C 0.12 3.74 6.15 85.63 0.53 4.26 16 17 C 0.44 19.02 7.85 87.66 0.69 19.71 16 18 O -0.61 -31.55 15.24 -3.08 -0.05 -31.60 16 19 N -0.58 -25.97 5.09 -306.98 -1.56 -27.53 16 20 C -0.33 -18.59 10.16 84.04 0.85 -17.74 16 21 H 0.06 4.23 7.39 -2.91 -0.02 4.21 16 22 C -0.01 -0.48 5.50 84.92 0.47 -0.01 16 23 N -0.93 -54.02 13.96 21.66 0.30 -53.72 16 24 Si 0.96 37.57 27.74 68.60 1.90 39.47 16 25 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 26 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 27 H -0.23 -7.62 6.52 99.48 0.65 -6.98 16 28 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.09 2.32 6.06 -2.39 -0.01 2.30 16 31 H 0.21 0.52 8.06 -2.91 -0.02 0.50 16 32 H 0.20 -0.79 8.06 -2.91 -0.02 -0.82 16 33 H 0.21 0.60 8.06 -2.91 -0.02 0.58 16 34 H 0.41 13.49 6.62 -92.71 -0.61 12.87 16 35 H 0.11 3.17 8.14 -2.38 -0.02 3.15 16 36 H 0.12 3.17 8.14 -2.39 -0.02 3.15 16 37 H 0.39 14.72 5.76 -92.71 -0.53 14.19 16 38 H 0.28 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -81.32 354.32 -0.90 -82.21 By element: Atomic # 1 Polarization: 32.17 SS G_CDS: -0.04 Total: 32.13 kcal Atomic # 6 Polarization: 27.60 SS G_CDS: 8.17 Total: 35.77 kcal Atomic # 7 Polarization: -137.16 SS G_CDS: -9.58 Total: -146.74 kcal Atomic # 8 Polarization: -49.19 SS G_CDS: -0.11 Total: -49.30 kcal Atomic # 14 Polarization: 37.57 SS G_CDS: 1.90 Total: 39.47 kcal Atomic # 16 Polarization: 7.69 SS G_CDS: -1.24 Total: 6.45 kcal Total: -81.32 -0.90 -82.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117459524.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.610 kcal (2) G-P(sol) polarization free energy of solvation -81.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds