Wall clock time and date at job start Wed Apr 1 2020 04:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00170 * 2 1 4 4 H 1.48493 * 109.46959 * 269.99594 * 3 2 1 5 5 H 1.48501 * 109.46660 * 29.99676 * 3 2 1 6 6 H 1.48499 * 109.47095 * 149.99363 * 3 2 1 7 7 C 1.37880 * 120.00240 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99707 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00275 * 180.02562 * 7 2 1 10 10 N 1.46503 * 109.47336 * 180.02562 * 9 7 2 11 11 C 1.46495 * 120.00380 * 262.77776 * 10 9 7 12 12 C 1.50704 * 109.47179 * 269.99851 * 11 10 9 13 13 C 1.38236 * 119.98518 * 269.73007 * 12 11 10 14 14 C 1.38220 * 120.01276 * 179.72459 * 13 12 11 15 15 C 1.38357 * 119.98342 * 0.54780 * 14 13 12 16 16 Cl 1.73600 * 120.01058 * 179.70477 * 15 14 13 17 17 C 1.38352 * 119.97227 * 359.71757 * 15 14 13 18 18 C 1.38211 * 119.98951 * 0.02562 * 17 15 14 19 19 C 1.34780 * 119.99499 * 82.77607 * 10 9 7 20 20 O 1.21543 * 119.99747 * 183.07402 * 19 10 9 21 21 C 1.47931 * 120.00269 * 3.07295 * 19 10 9 22 22 C 1.39976 * 120.11887 * 173.19666 * 21 19 10 23 23 C 1.38420 * 117.97138 * 179.97438 * 22 21 19 24 24 C 1.39352 * 118.03447 * 359.97438 * 23 22 21 25 25 O 1.35522 * 120.02705 * 179.97438 * 24 23 22 26 26 N 1.32668 * 119.94454 * 0.02562 * 24 23 22 27 27 N 1.28355 * 122.19804 * 359.97438 * 26 24 23 28 28 H 0.97006 * 120.00161 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47310 * 60.00582 * 9 7 2 30 30 H 1.09001 * 109.47521 * 300.00444 * 9 7 2 31 31 H 1.09008 * 109.47047 * 29.99556 * 11 10 9 32 32 H 1.08993 * 109.47138 * 149.99581 * 11 10 9 33 33 H 1.08000 * 119.99486 * 359.97438 * 13 12 11 34 34 H 1.07995 * 120.01082 * 180.26488 * 14 13 12 35 35 H 1.08001 * 120.00251 * 179.97438 * 17 15 14 36 36 H 1.08000 * 119.99395 * 179.97438 * 18 17 15 37 37 H 1.08002 * 121.01201 * 0.24742 * 22 21 19 38 38 H 1.07998 * 120.97826 * 179.97438 * 23 22 21 39 39 H 0.96704 * 113.99193 * 89.99979 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9999 -2.5753 0.0010 11 6 4.3940 -3.2131 1.2596 12 6 5.8581 -2.9619 1.5131 13 6 6.8039 -3.8522 1.0401 14 6 8.1473 -3.6194 1.2674 15 6 8.5446 -2.5009 1.9784 16 17 10.2312 -2.2118 2.2709 17 6 7.5971 -1.6131 2.4563 18 6 6.2545 -1.8442 2.2237 19 6 4.0866 -3.2592 -1.1571 20 8 4.4384 -4.4226 -1.1510 21 6 3.7535 -2.5940 -2.4358 22 6 3.9775 -3.2535 -3.6499 23 6 3.6492 -2.5899 -4.8195 24 6 3.1154 -1.3068 -4.7167 25 8 2.7801 -0.6202 -5.8360 26 7 2.9367 -0.7576 -3.5224 27 7 3.2400 -1.3698 -2.4358 28 1 -0.4851 0.8401 -0.0004 29 1 3.8745 -0.6801 0.8912 30 1 3.8753 -0.6804 -0.8888 31 1 3.8067 -2.7959 2.0778 32 1 4.2154 -4.2863 1.1945 33 1 6.4934 -4.7277 0.4893 34 1 8.8863 -4.3127 0.8941 35 1 7.9067 -0.7401 3.0116 36 1 5.5148 -1.1515 2.5971 37 1 4.3899 -4.2515 -3.6732 38 1 3.8022 -3.0530 -5.7831 39 1 1.8687 -0.7624 -6.1263 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146982896.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:02 Heat of formation + Delta-G solvation = 31.698911 kcal Electronic energy + Delta-G solvation = -27765.539717 eV Core-core repulsion = 23701.277386 eV Total energy + Delta-G solvation = -4064.262331 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.99957 -39.70229 -38.71917 -37.34299 -36.56935 -35.40372 -32.90632 -32.70227 -31.85889 -31.04206 -30.67683 -28.02655 -26.32603 -24.67436 -23.98170 -22.95537 -22.35989 -21.56751 -19.64984 -18.97911 -17.75213 -17.19168 -16.90191 -16.69448 -15.93008 -15.69828 -15.38356 -15.33200 -14.77728 -14.39358 -14.07675 -13.74487 -13.63433 -13.49700 -13.42432 -13.20282 -12.99033 -12.47323 -12.28345 -12.13379 -11.90800 -11.66095 -11.47443 -11.27092 -10.99807 -10.81852 -10.74495 -10.44527 -10.23463 -10.09989 -9.64384 -9.51182 -9.40527 -9.01298 -8.96438 -8.61362 -8.49491 -7.94462 -6.09402 -4.04935 0.67396 0.98970 1.10443 1.32688 2.07340 2.95385 3.29783 3.35509 3.39071 3.46802 3.53881 3.84044 3.98218 4.41598 4.44322 4.75087 4.80003 4.82104 4.89116 4.98081 5.09495 5.11810 5.27926 5.31156 5.40411 5.62325 5.69462 5.76582 5.98840 6.02157 6.04764 6.12159 6.22536 6.24785 6.39481 6.64063 6.83018 6.96193 7.22677 7.35976 7.56370 7.90516 8.39329 8.56619 8.91460 8.96984 9.52218 11.03206 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.009862 B = 0.003911 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2838.414893 B = 7157.214956 C = 8469.635102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.087 3.913 3 Si 0.869 3.131 4 H -0.264 1.264 5 H -0.290 1.290 6 H -0.268 1.268 7 C -0.508 4.508 8 H 0.072 0.928 9 C 0.197 3.803 10 N -0.562 5.562 11 C 0.152 3.848 12 C -0.092 4.092 13 C -0.086 4.086 14 C -0.117 4.117 15 C -0.036 4.036 16 Cl -0.082 7.082 17 C -0.115 4.115 18 C -0.090 4.090 19 C 0.579 3.421 20 O -0.559 6.559 21 C 0.005 3.995 22 C -0.052 4.052 23 C -0.160 4.160 24 C 0.263 3.737 25 O -0.479 6.479 26 N -0.261 5.261 27 N -0.114 5.114 28 H 0.264 0.736 29 H 0.029 0.971 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.138 0.862 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.136 0.864 37 H 0.159 0.841 38 H 0.154 0.846 39 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.484 -5.874 -2.626 14.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.116 4.116 3 Si 0.696 3.304 4 H -0.189 1.189 5 H -0.216 1.216 6 H -0.193 1.193 7 C -0.547 4.547 8 H 0.090 0.910 9 C 0.076 3.924 10 N -0.289 5.289 11 C 0.029 3.971 12 C -0.094 4.094 13 C -0.105 4.105 14 C -0.136 4.136 15 C -0.062 4.062 16 Cl -0.053 7.053 17 C -0.134 4.134 18 C -0.108 4.108 19 C 0.365 3.635 20 O -0.439 6.439 21 C -0.140 4.140 22 C -0.081 4.081 23 C -0.189 4.189 24 C 0.079 3.921 25 O -0.285 6.285 26 N -0.113 5.113 27 N 0.037 4.963 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.085 0.915 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.156 0.844 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.154 0.846 37 H 0.177 0.823 38 H 0.172 0.828 39 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 12.691 -4.809 -1.795 13.690 hybrid contribution 0.326 -0.214 -1.032 1.104 sum 13.017 -5.023 -2.827 14.236 Atomic orbital electron populations 1.69887 1.06338 1.27034 1.49970 1.24673 0.94455 0.98684 0.93803 0.86960 0.80057 0.83978 0.79442 1.18904 1.21586 1.19261 1.21092 0.88446 0.94611 1.50583 0.91024 1.20519 0.96437 0.76792 0.98623 1.47919 1.60043 1.16329 1.04634 1.20382 0.89550 0.99900 0.87234 1.20518 0.96940 0.94810 0.97102 1.21216 0.91485 0.99764 0.98000 1.21030 0.96650 0.96617 0.99254 1.20936 0.84562 0.97960 1.02778 1.98352 1.15852 1.96039 1.95071 1.21024 0.92295 0.99176 1.00904 1.21179 0.95230 0.96819 0.97598 1.17408 0.77894 0.85274 0.82917 1.90688 1.50485 1.15863 1.86822 1.22901 1.00705 0.94988 0.95364 1.22280 0.94222 1.01020 0.90572 1.22368 1.01819 0.94315 1.00438 1.21223 0.94604 0.88374 0.87937 1.84686 1.35398 1.70147 1.38257 1.73433 1.13520 1.29517 0.94862 1.74419 1.01793 1.04961 1.15163 0.92594 0.95277 0.91481 0.88495 0.89023 0.84400 0.85224 0.85089 0.84627 0.82346 0.82849 0.73647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.17 13.96 55.43 0.77 -25.39 16 2 C 0.09 2.38 5.47 -17.82 -0.10 2.28 16 3 Si 0.87 20.84 27.47 -169.99 -4.67 16.17 16 4 H -0.26 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 7 C -0.51 -13.24 8.51 -34.44 -0.29 -13.53 16 8 H 0.07 2.09 8.06 -52.49 -0.42 1.67 16 9 C 0.20 4.34 3.84 -5.19 -0.02 4.32 16 10 N -0.56 -10.94 2.46 -177.52 -0.44 -11.38 16 11 C 0.15 2.46 5.52 -5.19 -0.03 2.43 16 12 C -0.09 -1.34 5.46 -104.62 -0.57 -1.91 16 13 C -0.09 -1.17 9.70 -39.59 -0.38 -1.56 16 14 C -0.12 -1.46 9.83 -39.54 -0.39 -1.85 16 15 C -0.04 -0.45 6.32 -39.50 -0.25 -0.70 16 16 Cl -0.08 -0.93 28.96 -51.86 -1.50 -2.43 16 17 C -0.12 -1.45 9.83 -39.55 -0.39 -1.84 16 18 C -0.09 -1.22 9.70 -39.59 -0.38 -1.60 16 19 C 0.58 11.33 7.58 -12.29 -0.09 11.24 16 20 O -0.56 -10.84 15.66 5.33 0.08 -10.76 16 21 C 0.01 0.10 6.69 -82.85 -0.55 -0.45 16 22 C -0.05 -0.77 9.72 -38.86 -0.38 -1.15 16 23 C -0.16 -2.08 10.14 -39.10 -0.40 -2.47 16 24 C 0.26 4.15 7.85 -16.78 -0.13 4.02 16 25 O -0.48 -6.18 13.56 -18.26 -0.25 -6.43 16 26 N -0.26 -5.31 11.54 30.54 0.35 -4.96 16 27 N -0.11 -2.45 6.20 33.32 0.21 -2.24 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.03 0.62 7.08 -51.93 -0.37 0.26 16 30 H 0.07 1.56 4.69 -52.16 -0.24 1.31 16 31 H 0.10 1.50 8.02 -51.92 -0.42 1.08 16 32 H 0.09 1.44 7.32 -51.93 -0.38 1.06 16 33 H 0.14 1.87 7.75 -52.49 -0.41 1.46 16 34 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 36 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.16 1.97 7.73 -52.49 -0.41 1.57 16 38 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 39 H 0.41 3.16 9.06 45.56 0.41 3.57 16 LS Contribution 356.97 15.07 5.38 5.38 Total: -1.00 -32.36 356.97 -7.51 -39.87 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -3.09 Total: 4.95 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -4.36 Total: -2.77 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: 0.90 Total: -43.97 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.16 Total: -17.19 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.67 Total: 16.17 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.50 Total: -2.43 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.36 -7.51 -39.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146982896.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.565 kcal (2) G-P(sol) polarization free energy of solvation -32.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds