Wall clock time and date at job start Wed Apr 1 2020 04:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00170 * 2 1 4 4 H 1.48493 * 109.46959 * 269.99594 * 3 2 1 5 5 H 1.48501 * 109.46660 * 29.99676 * 3 2 1 6 6 H 1.48499 * 109.47095 * 149.99363 * 3 2 1 7 7 C 1.37880 * 120.00240 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99707 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00275 * 180.02562 * 7 2 1 10 10 N 1.46503 * 109.47336 * 180.02562 * 9 7 2 11 11 C 1.46495 * 120.00380 * 262.77776 * 10 9 7 12 12 C 1.50704 * 109.47179 * 269.99851 * 11 10 9 13 13 C 1.38236 * 119.98518 * 269.73007 * 12 11 10 14 14 C 1.38220 * 120.01276 * 179.72459 * 13 12 11 15 15 C 1.38357 * 119.98342 * 0.54780 * 14 13 12 16 16 Cl 1.73600 * 120.01058 * 179.70477 * 15 14 13 17 17 C 1.38352 * 119.97227 * 359.71757 * 15 14 13 18 18 C 1.38211 * 119.98951 * 0.02562 * 17 15 14 19 19 C 1.34780 * 119.99499 * 82.77607 * 10 9 7 20 20 O 1.21543 * 119.99747 * 183.07402 * 19 10 9 21 21 C 1.47931 * 120.00269 * 3.07295 * 19 10 9 22 22 C 1.39976 * 120.11887 * 173.19666 * 21 19 10 23 23 C 1.38420 * 117.97138 * 179.97438 * 22 21 19 24 24 C 1.39352 * 118.03447 * 359.97438 * 23 22 21 25 25 O 1.35522 * 120.02705 * 179.97438 * 24 23 22 26 26 N 1.32668 * 119.94454 * 0.02562 * 24 23 22 27 27 N 1.28355 * 122.19804 * 359.97438 * 26 24 23 28 28 H 0.97006 * 120.00161 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47310 * 60.00582 * 9 7 2 30 30 H 1.09001 * 109.47521 * 300.00444 * 9 7 2 31 31 H 1.09008 * 109.47047 * 29.99556 * 11 10 9 32 32 H 1.08993 * 109.47138 * 149.99581 * 11 10 9 33 33 H 1.08000 * 119.99486 * 359.97438 * 13 12 11 34 34 H 1.07995 * 120.01082 * 180.26488 * 14 13 12 35 35 H 1.08001 * 120.00251 * 179.97438 * 17 15 14 36 36 H 1.08000 * 119.99395 * 179.97438 * 18 17 15 37 37 H 1.08002 * 121.01201 * 0.24742 * 22 21 19 38 38 H 1.07998 * 120.97826 * 179.97438 * 23 22 21 39 39 H 0.96704 * 113.99193 * 89.99979 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9999 -2.5753 0.0010 11 6 4.3940 -3.2131 1.2596 12 6 5.8581 -2.9619 1.5131 13 6 6.8039 -3.8522 1.0401 14 6 8.1473 -3.6194 1.2674 15 6 8.5446 -2.5009 1.9784 16 17 10.2312 -2.2118 2.2709 17 6 7.5971 -1.6131 2.4563 18 6 6.2545 -1.8442 2.2237 19 6 4.0866 -3.2592 -1.1571 20 8 4.4384 -4.4226 -1.1510 21 6 3.7535 -2.5940 -2.4358 22 6 3.9775 -3.2535 -3.6499 23 6 3.6492 -2.5899 -4.8195 24 6 3.1154 -1.3068 -4.7167 25 8 2.7801 -0.6202 -5.8360 26 7 2.9367 -0.7576 -3.5224 27 7 3.2400 -1.3698 -2.4358 28 1 -0.4851 0.8401 -0.0004 29 1 3.8745 -0.6801 0.8912 30 1 3.8753 -0.6804 -0.8888 31 1 3.8067 -2.7959 2.0778 32 1 4.2154 -4.2863 1.1945 33 1 6.4934 -4.7277 0.4893 34 1 8.8863 -4.3127 0.8941 35 1 7.9067 -0.7401 3.0116 36 1 5.5148 -1.1515 2.5971 37 1 4.3899 -4.2515 -3.6732 38 1 3.8022 -3.0530 -5.7831 39 1 1.8687 -0.7624 -6.1263 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146982896.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:02 Heat of formation + Delta-G solvation = 8.422217 kcal Electronic energy + Delta-G solvation = -27766.549070 eV Core-core repulsion = 23701.277386 eV Total energy + Delta-G solvation = -4065.271684 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.33221 -40.93805 -39.92843 -38.49316 -37.57237 -36.88187 -34.55582 -34.16298 -33.23890 -32.04893 -31.93248 -29.79617 -27.61323 -26.01381 -25.25194 -24.44797 -23.68511 -22.69638 -21.03688 -20.09593 -19.09598 -19.03689 -18.16190 -18.06609 -17.12848 -17.05860 -16.66323 -16.43854 -16.13203 -16.03147 -15.39269 -15.11165 -14.88700 -14.56289 -14.50137 -14.47466 -14.26955 -14.24333 -13.87300 -13.25172 -13.21300 -12.92961 -12.72412 -12.59933 -12.37700 -12.28728 -12.02833 -11.97980 -11.76853 -11.60170 -11.32955 -11.06753 -10.81036 -10.57157 -10.25244 -10.01256 -9.65894 -9.50576 -8.18854 -6.17469 -0.59512 -0.20746 0.05911 0.32233 1.11363 1.40835 1.49861 1.51369 1.57014 2.00258 2.34604 2.45124 2.63519 2.72692 3.07748 3.22828 3.50243 3.70790 3.79356 3.82095 3.87959 3.95168 4.01257 4.19053 4.36924 4.51079 4.59547 4.66387 4.74540 4.79009 4.86790 4.99533 5.01245 5.18796 5.22648 5.26003 5.54990 5.57863 5.67084 5.80442 6.20623 6.46411 6.48097 6.78890 7.02854 7.44681 7.62430 8.97913 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.009862 B = 0.003911 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2838.414893 B = 7157.214956 C = 8469.635102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.038 3.962 3 Si 0.922 3.078 4 H -0.273 1.273 5 H -0.290 1.290 6 H -0.240 1.240 7 C -0.494 4.494 8 H 0.027 0.973 9 C 0.210 3.790 10 N -0.568 5.568 11 C 0.151 3.849 12 C -0.103 4.103 13 C -0.091 4.091 14 C -0.115 4.115 15 C -0.040 4.040 16 Cl -0.069 7.069 17 C -0.115 4.115 18 C -0.097 4.097 19 C 0.574 3.426 20 O -0.562 6.562 21 C -0.018 4.018 22 C -0.048 4.048 23 C -0.128 4.128 24 C 0.267 3.733 25 O -0.478 6.478 26 N -0.311 5.311 27 N -0.155 5.155 28 H 0.262 0.738 29 H 0.040 0.960 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.136 0.864 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.139 0.861 37 H 0.186 0.814 38 H 0.207 0.793 39 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.125 -6.258 -3.981 16.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.160 4.160 3 Si 0.747 3.253 4 H -0.199 1.199 5 H -0.216 1.216 6 H -0.163 1.163 7 C -0.533 4.533 8 H 0.045 0.955 9 C 0.088 3.912 10 N -0.296 5.296 11 C 0.029 3.971 12 C -0.105 4.105 13 C -0.109 4.109 14 C -0.133 4.133 15 C -0.066 4.066 16 Cl -0.040 7.040 17 C -0.133 4.133 18 C -0.116 4.116 19 C 0.360 3.640 20 O -0.442 6.442 21 C -0.165 4.165 22 C -0.076 4.076 23 C -0.157 4.157 24 C 0.082 3.918 25 O -0.288 6.288 26 N -0.164 5.164 27 N -0.003 5.003 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.084 0.916 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.153 0.847 34 H 0.167 0.833 35 H 0.167 0.833 36 H 0.157 0.843 37 H 0.203 0.797 38 H 0.224 0.776 39 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 15.342 -5.203 -3.134 16.500 hybrid contribution -0.447 -0.238 -0.804 0.950 sum 14.894 -5.441 -3.937 16.338 Atomic orbital electron populations 1.70025 1.08099 1.27604 1.53082 1.25339 0.94922 1.01873 0.93886 0.86096 0.80085 0.80093 0.79030 1.19869 1.21579 1.16342 1.21126 0.90483 0.92512 1.49133 0.95515 1.20181 0.93592 0.78553 0.98852 1.47916 1.60198 1.15571 1.05879 1.20476 0.91049 0.99600 0.85986 1.20363 0.95824 0.95855 0.98415 1.21213 0.91965 0.99603 0.98145 1.21220 0.96467 0.96885 0.98735 1.21071 0.85312 0.97859 1.02395 1.98359 1.14723 1.95966 1.94958 1.21226 0.91783 0.99717 1.00606 1.21265 0.95991 0.96643 0.97687 1.17646 0.77668 0.85354 0.83319 1.90665 1.50756 1.15741 1.87026 1.23081 1.01619 0.95188 0.96579 1.22606 0.93504 1.01931 0.89577 1.22829 0.98396 0.92542 1.01926 1.21424 0.93778 0.89237 0.87388 1.84651 1.37360 1.70068 1.36683 1.73231 1.15623 1.31139 0.96359 1.74218 1.03321 1.06330 1.16463 0.92853 0.94219 0.91644 0.88470 0.89027 0.84662 0.83294 0.83266 0.84276 0.79667 0.77626 0.70973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.84 13.96 21.45 0.30 -57.54 16 2 C 0.04 2.13 5.47 84.66 0.46 2.59 16 3 Si 0.92 43.62 27.47 68.60 1.88 45.51 16 4 H -0.27 -13.25 7.11 99.48 0.71 -12.55 16 5 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 6 H -0.24 -10.15 6.54 99.48 0.65 -9.50 16 7 C -0.49 -26.69 8.51 25.60 0.22 -26.47 16 8 H 0.03 1.65 8.06 -2.91 -0.02 1.62 16 9 C 0.21 9.38 3.84 85.63 0.33 9.71 16 10 N -0.57 -22.41 2.46 -833.82 -2.05 -24.46 16 11 C 0.15 4.92 5.52 85.64 0.47 5.39 16 12 C -0.10 -2.94 5.46 -19.86 -0.11 -3.05 16 13 C -0.09 -2.37 9.70 22.26 0.22 -2.15 16 14 C -0.11 -2.63 9.83 22.29 0.22 -2.41 16 15 C -0.04 -0.91 6.32 22.33 0.14 -0.77 16 16 Cl -0.07 -1.40 28.96 -2.72 -0.08 -1.48 16 17 C -0.11 -2.67 9.83 22.29 0.22 -2.45 16 18 C -0.10 -2.53 9.70 22.26 0.22 -2.32 16 19 C 0.57 22.49 7.58 86.81 0.66 23.15 16 20 O -0.56 -21.50 15.66 -3.85 -0.06 -21.57 16 21 C -0.02 -0.67 6.69 42.00 0.28 -0.39 16 22 C -0.05 -1.29 9.72 22.73 0.22 -1.07 16 23 C -0.13 -2.84 10.14 22.58 0.23 -2.61 16 24 C 0.27 7.86 7.85 84.84 0.67 8.52 16 25 O -0.48 -11.05 13.56 -88.25 -1.20 -12.25 16 26 N -0.31 -12.62 11.54 -170.02 -1.96 -14.58 16 27 N -0.16 -6.71 6.20 -48.51 -0.30 -7.01 16 28 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 29 H 0.04 1.68 7.08 -2.39 -0.02 1.66 16 30 H 0.07 3.06 4.69 -2.69 -0.01 3.05 16 31 H 0.10 3.08 8.02 -2.38 -0.02 3.06 16 32 H 0.09 2.93 7.32 -2.39 -0.02 2.92 16 33 H 0.14 3.57 7.75 -2.91 -0.02 3.55 16 34 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 35 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 36 H 0.14 3.46 8.06 -2.91 -0.02 3.43 16 37 H 0.19 3.97 7.73 -2.91 -0.02 3.94 16 38 H 0.21 2.40 8.06 -2.91 -0.02 2.38 16 39 H 0.43 5.50 9.06 -74.05 -0.67 4.83 16 Total: -1.00 -73.50 356.97 1.37 -72.14 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.39 Total: 15.58 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: 4.44 Total: 5.67 kcal Atomic # 7 Polarization: -99.58 SS G_CDS: -4.02 Total: -103.60 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -1.26 Total: -33.81 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.88 Total: 45.51 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -0.08 Total: -1.48 kcal Total: -73.50 1.37 -72.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146982896.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.558 kcal (2) G-P(sol) polarization free energy of solvation -73.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds