Wall clock time and date at job start Wed Apr 1 2020 04:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 119.99804 * 2 1 4 4 H 1.48504 * 109.47205 * 269.99635 * 3 2 1 5 5 H 1.48497 * 109.47735 * 29.99914 * 3 2 1 6 6 H 1.48506 * 109.47288 * 150.00216 * 3 2 1 7 7 C 1.37877 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99687 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00031 * 180.02562 * 7 2 1 10 10 N 1.46502 * 109.47316 * 179.97438 * 9 7 2 11 11 C 1.46492 * 120.00005 * 262.47368 * 10 9 7 12 12 C 1.50699 * 109.47171 * 269.99808 * 11 10 9 13 13 C 1.38249 * 119.98717 * 269.72950 * 12 11 10 14 14 C 1.38209 * 120.00907 * 179.72505 * 13 12 11 15 15 C 1.38346 * 119.99173 * 0.54450 * 14 13 12 16 16 Cl 1.73603 * 120.01768 * 179.70357 * 15 14 13 17 17 C 1.38353 * 119.97198 * 359.72866 * 15 14 13 18 18 C 1.38206 * 119.98764 * 359.97438 * 17 15 14 19 19 C 1.34782 * 119.99628 * 82.47450 * 10 9 7 20 20 O 1.21598 * 119.99719 * 183.00308 * 19 10 9 21 21 C 1.47575 * 120.00125 * 2.99550 * 19 10 9 22 22 C 1.38053 * 119.72384 * 173.42011 * 21 19 10 23 23 N 1.34880 * 119.94499 * 180.02562 * 22 21 19 24 24 H 0.97000 * 120.30088 * 180.02562 * 23 22 21 25 25 C 1.34958 * 119.38298 * 359.71174 * 23 22 21 26 26 O 1.21860 * 120.26760 * 180.29452 * 25 23 22 27 27 C 1.41778 * 119.45866 * 0.53810 * 25 23 22 28 28 N 1.30602 * 120.03690 * 359.45853 * 27 25 23 29 29 H 0.97000 * 120.00381 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47536 * 59.99459 * 9 7 2 31 31 H 1.09005 * 109.47152 * 299.99718 * 9 7 2 32 32 H 1.08993 * 109.47285 * 29.99680 * 11 10 9 33 33 H 1.09001 * 109.47264 * 149.99816 * 11 10 9 34 34 H 1.08002 * 119.99007 * 359.97438 * 13 12 11 35 35 H 1.08007 * 120.00320 * 180.27331 * 14 13 12 36 36 H 1.08006 * 120.00813 * 179.97438 * 17 15 14 37 37 H 1.07995 * 119.99598 * 179.97438 * 18 17 15 38 38 H 1.08000 * 120.02457 * 0.02873 * 22 21 19 39 39 H 1.08005 * 119.98294 * 179.73068 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5753 0.0022 11 6 4.4002 -3.2096 1.2605 12 6 5.8655 -2.9578 1.5061 13 6 6.8090 -3.8495 1.0308 14 6 8.1534 -3.6160 1.2508 15 6 8.5543 -2.4957 1.9566 16 17 10.2423 -2.2058 2.2400 17 6 7.6093 -1.6066 2.4369 18 6 6.2656 -1.8379 2.2110 19 6 4.0808 -3.2623 -1.1545 20 8 4.4340 -4.4259 -1.1471 21 6 3.7405 -2.6026 -2.4300 22 6 3.9546 -3.2654 -3.6219 23 7 3.6457 -2.6664 -4.7903 24 1 3.7936 -3.1275 -5.6307 25 6 3.1230 -1.4222 -4.7786 26 8 2.8330 -0.8680 -5.8245 27 6 2.9189 -0.7632 -3.5400 28 7 3.2259 -1.3638 -2.4216 29 1 -0.4851 0.8400 -0.0004 30 1 3.8745 -0.6800 0.8910 31 1 3.8752 -0.6805 -0.8889 32 1 3.8171 -2.7904 2.0804 33 1 4.2213 -4.2831 1.1993 34 1 6.4957 -4.7265 0.4839 35 1 8.8907 -4.3104 0.8756 36 1 7.9216 -0.7320 2.9884 37 1 5.5278 -1.1442 2.5863 38 1 4.3690 -4.2627 -3.6188 39 1 2.5052 0.2343 -3.5211 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147622566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:13 Heat of formation + Delta-G solvation = -0.719060 kcal Electronic energy + Delta-G solvation = -27850.397603 eV Core-core repulsion = 23784.729523 eV Total energy + Delta-G solvation = -4065.668080 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.78540 -40.98690 -39.94885 -38.46740 -37.51824 -36.93963 -35.98583 -34.47201 -32.71347 -32.00433 -31.31466 -29.69560 -27.38619 -26.40360 -25.24139 -24.34836 -23.63687 -22.77394 -21.46588 -19.48052 -19.30458 -18.95451 -18.06999 -17.98740 -17.15589 -17.05003 -16.87710 -16.49227 -16.25049 -15.93697 -15.82195 -15.54391 -15.14366 -14.59101 -14.54227 -14.42776 -14.33272 -14.07205 -13.70926 -13.50907 -13.15990 -12.81703 -12.78455 -12.67126 -12.54594 -12.33478 -12.22734 -12.02308 -11.93765 -11.73165 -11.56781 -11.12122 -10.61240 -9.98623 -9.96111 -9.57324 -9.52861 -9.17419 -8.12554 -6.10387 -0.48348 0.10536 0.22051 0.36326 1.14806 1.47130 1.49195 1.51055 1.55939 1.84323 2.24076 2.48020 2.69843 2.81169 3.19296 3.23641 3.28695 3.64004 3.83320 3.88833 3.97217 3.99062 4.20828 4.31682 4.41524 4.61029 4.71371 4.75214 4.85964 4.91515 5.05093 5.24979 5.26314 5.26900 5.31752 5.39097 5.62123 5.66787 5.79783 5.84839 6.33073 6.51501 6.61580 6.74403 6.88759 7.27192 7.50876 9.04404 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.009753 B = 0.003961 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2870.322989 B = 7067.512004 C = 8448.252745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.029 3.971 3 Si 0.922 3.078 4 H -0.262 1.262 5 H -0.297 1.297 6 H -0.242 1.242 7 C -0.485 4.485 8 H 0.023 0.977 9 C 0.212 3.788 10 N -0.575 5.575 11 C 0.153 3.847 12 C -0.100 4.100 13 C -0.089 4.089 14 C -0.115 4.115 15 C -0.041 4.041 16 Cl -0.071 7.071 17 C -0.116 4.116 18 C -0.098 4.098 19 C 0.587 3.413 20 O -0.574 6.574 21 C -0.100 4.100 22 C 0.203 3.797 23 N -0.564 5.564 24 H 0.443 0.557 25 C 0.485 3.515 26 O -0.564 6.564 27 C -0.001 4.001 28 N -0.334 5.334 29 H 0.261 0.739 30 H 0.030 0.970 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.137 0.863 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.137 0.863 38 H 0.227 0.773 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.504 -6.806 -0.909 18.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.169 4.169 3 Si 0.747 3.253 4 H -0.187 1.187 5 H -0.224 1.224 6 H -0.165 1.165 7 C -0.524 4.524 8 H 0.042 0.958 9 C 0.091 3.909 10 N -0.302 5.302 11 C 0.030 3.970 12 C -0.102 4.102 13 C -0.108 4.108 14 C -0.133 4.133 15 C -0.067 4.067 16 Cl -0.042 7.042 17 C -0.134 4.134 18 C -0.117 4.117 19 C 0.376 3.624 20 O -0.457 6.457 21 C -0.224 4.224 22 C 0.066 3.934 23 N -0.197 5.197 24 H 0.286 0.714 25 C 0.282 3.718 26 O -0.443 6.443 27 C -0.189 4.189 28 N -0.050 5.050 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.155 0.845 35 H 0.166 0.834 36 H 0.165 0.835 37 H 0.155 0.845 38 H 0.243 0.757 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 17.428 -6.589 -0.586 18.641 hybrid contribution -0.342 0.489 -0.888 1.070 sum 17.085 -6.100 -1.474 18.201 Atomic orbital electron populations 1.70050 1.08247 1.27532 1.53500 1.25416 0.94888 1.02007 0.94548 0.86100 0.79865 0.79737 0.79598 1.18675 1.22368 1.16510 1.21199 0.90833 0.92289 1.48055 0.95834 1.20194 0.93148 0.78783 0.98803 1.47771 1.61028 1.15587 1.05798 1.20384 0.90728 0.99517 0.86329 1.20389 0.95979 0.95647 0.98160 1.21210 0.91834 0.99598 0.98121 1.21214 0.96515 0.96790 0.98789 1.21062 0.85172 0.97922 1.02582 1.98359 1.14750 1.95974 1.95135 1.21207 0.91860 0.99705 1.00632 1.21239 0.95837 0.96741 0.97838 1.17401 0.76864 0.84958 0.83224 1.90673 1.51853 1.15923 1.87239 1.20540 1.13426 0.94181 0.94237 1.23496 0.87715 0.98912 0.83271 1.43411 1.49698 1.15783 1.10848 0.71396 1.18614 0.79293 0.81866 0.92068 1.90935 1.53314 1.65266 1.34796 1.24766 1.05528 1.02888 0.85747 1.68534 0.99977 1.07460 1.28991 0.92986 0.95244 0.90608 0.89145 0.89267 0.84493 0.83357 0.83467 0.84512 0.75705 0.80543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.34 13.96 21.45 0.30 -56.05 16 2 C 0.03 1.52 5.47 84.65 0.46 1.99 16 3 Si 0.92 40.47 27.47 68.60 1.88 42.36 16 4 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.30 -13.35 7.11 99.48 0.71 -12.64 16 6 H -0.24 -9.54 6.54 99.48 0.65 -8.89 16 7 C -0.48 -24.87 8.45 25.60 0.22 -24.65 16 8 H 0.02 1.40 8.06 -2.91 -0.02 1.38 16 9 C 0.21 8.82 3.84 85.63 0.33 9.15 16 10 N -0.57 -21.12 2.46 -834.23 -2.05 -23.17 16 11 C 0.15 4.75 5.52 85.63 0.47 5.22 16 12 C -0.10 -2.70 5.46 -19.86 -0.11 -2.81 16 13 C -0.09 -2.18 9.70 22.27 0.22 -1.96 16 14 C -0.11 -2.47 9.83 22.29 0.22 -2.25 16 15 C -0.04 -0.89 6.32 22.32 0.14 -0.75 16 16 Cl -0.07 -1.39 28.96 -2.72 -0.08 -1.47 16 17 C -0.12 -2.57 9.83 22.29 0.22 -2.35 16 18 C -0.10 -2.44 9.70 22.26 0.22 -2.23 16 19 C 0.59 20.75 7.56 86.71 0.66 21.40 16 20 O -0.57 -19.77 15.55 -4.02 -0.06 -19.83 16 21 C -0.10 -3.25 6.58 41.21 0.27 -2.98 16 22 C 0.20 4.40 10.77 84.18 0.91 5.31 16 23 N -0.56 -11.55 5.28 -316.87 -1.67 -13.22 16 24 H 0.44 5.45 8.92 -92.71 -0.83 4.62 16 25 C 0.48 14.67 7.74 85.09 0.66 15.33 16 26 O -0.56 -20.09 17.95 -4.86 -0.09 -20.18 16 27 C 0.00 -0.05 11.23 85.75 0.96 0.92 16 28 N -0.33 -12.53 5.01 -183.47 -0.92 -13.45 16 29 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 30 H 0.03 1.19 7.07 -2.39 -0.02 1.17 16 31 H 0.08 3.17 4.68 -3.11 -0.01 3.16 16 32 H 0.09 2.80 8.01 -2.39 -0.02 2.78 16 33 H 0.09 2.74 7.32 -2.39 -0.02 2.72 16 34 H 0.14 3.34 7.75 -2.91 -0.02 3.32 16 35 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 36 H 0.15 2.71 8.06 -2.91 -0.02 2.68 16 37 H 0.14 3.29 8.06 -2.91 -0.02 3.26 16 38 H 0.23 3.05 7.60 -2.91 -0.02 3.03 16 39 H 0.18 6.24 8.06 -2.91 -0.02 6.22 16 Total: -1.00 -70.06 355.34 3.38 -66.68 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.24 Total: 18.99 kcal Atomic # 6 Polarization: 13.50 SS G_CDS: 5.84 Total: 19.33 kcal Atomic # 7 Polarization: -101.54 SS G_CDS: -4.35 Total: -105.89 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -0.15 Total: -40.00 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 1.88 Total: 42.36 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -0.08 Total: -1.47 kcal Total: -70.06 3.38 -66.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147622566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.962 kcal (2) G-P(sol) polarization free energy of solvation -70.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds