Wall clock time and date at job start Wed Apr 1 2020 04:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31965 * 120.39364 * 2 1 4 4 N 1.28705 * 120.55833 * 179.76306 * 3 2 1 5 5 C 1.32701 * 121.42343 * 0.52811 * 4 3 2 6 6 N 1.38412 * 119.61941 * 179.75162 * 5 4 3 7 7 N 1.40100 * 119.99972 * 359.72022 * 6 5 4 8 8 C 1.34779 * 120.00226 * 180.02562 * 7 6 5 9 9 O 1.21551 * 119.99667 * 0.28191 * 8 7 6 10 10 C 1.47861 * 120.00238 * 180.02562 * 8 7 6 11 11 C 1.39675 * 120.09912 * 359.72810 * 10 8 7 12 12 C 1.38040 * 120.03698 * 179.71975 * 11 10 8 13 13 C 1.38177 * 120.24438 * 0.55858 * 12 11 10 14 14 C 1.39184 * 120.20059 * 359.71487 * 13 12 11 15 15 S 1.76205 * 120.01833 * 179.97438 * 14 13 12 16 16 C 1.76191 * 99.99935 * 265.53074 * 15 14 13 17 17 H 1.07998 * 120.00482 * 5.12208 * 16 15 14 18 18 C 1.38732 * 119.99743 * 185.11905 * 16 15 14 19 19 N 1.31620 * 119.99964 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99981 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47100 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.46893 * 120.00306 * 20 18 16 23 23 H 1.48500 * 109.47192 * 240.00115 * 20 18 16 24 24 C 1.38875 * 119.95753 * 0.02562 * 14 13 12 25 25 N 1.32685 * 120.76247 * 359.46947 * 5 4 3 26 26 C 1.32874 * 119.36362 * 0.25670 * 25 5 4 27 27 O 1.35521 * 120.65903 * 179.97438 * 26 25 5 28 28 H 1.09000 * 109.47220 * 269.97744 * 1 2 3 29 29 H 1.08998 * 109.46989 * 29.97480 * 1 2 3 30 30 H 1.09004 * 109.47112 * 149.97661 * 1 2 3 31 31 H 0.97001 * 120.00248 * 179.72300 * 6 5 4 32 32 H 0.97006 * 120.00296 * 0.02562 * 7 6 5 33 33 H 1.08005 * 119.98322 * 359.97438 * 11 10 8 34 34 H 1.07998 * 119.87774 * 180.25260 * 12 11 10 35 35 H 1.08003 * 119.89866 * 179.69943 * 13 12 11 36 36 H 0.96999 * 119.99983 * 179.97438 * 19 18 16 37 37 H 1.07998 * 120.11708 * 180.02562 * 24 14 13 38 38 H 0.96695 * 114.00097 * 89.99686 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1747 1.1383 0.0000 4 7 3.4617 1.1420 0.0046 5 6 4.1569 0.0116 -0.0010 6 7 5.5402 0.0592 -0.0010 7 7 6.1985 1.2959 -0.0010 8 6 7.5455 1.3423 -0.0015 9 8 8.1891 0.3111 -0.0071 10 6 8.2404 2.6475 -0.0010 11 6 7.5029 3.8336 -0.0057 12 6 8.1528 5.0514 0.0007 13 6 9.5336 5.1034 0.0001 14 6 10.2785 3.9276 -0.0010 15 16 12.0391 3.9994 -0.0024 16 6 12.3488 3.8774 -1.7326 17 1 11.5241 3.8733 -2.4299 18 6 13.6522 3.7868 -2.1992 19 7 14.6572 3.7914 -1.3494 20 14 13.9806 3.6567 -4.0335 21 1 12.6910 3.6722 -4.7696 22 1 14.8131 4.8063 -4.4700 23 1 14.6989 2.3887 -4.3191 24 6 9.6332 2.6979 -0.0019 25 7 3.5412 -1.1637 -0.0010 26 6 2.2130 -1.2035 -0.0005 27 8 1.5572 -2.3895 -0.0010 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 6.0538 -0.7636 -0.0010 32 1 5.6849 2.1188 -0.0007 33 1 6.4234 3.7980 -0.0101 34 1 7.5800 5.9670 0.0012 35 1 10.0364 6.0592 0.0002 36 1 15.5685 3.7276 -1.6756 37 1 10.2086 1.7840 -0.0023 38 1 1.3672 -2.7342 0.8822 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160450953.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:44 Heat of formation + Delta-G solvation = 72.495602 kcal Electronic energy + Delta-G solvation = -25662.613756 eV Core-core repulsion = 21634.456960 eV Total energy + Delta-G solvation = -4028.156796 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.34177 -40.31520 -38.71956 -38.12652 -36.82902 -34.98919 -33.44334 -32.54244 -32.09421 -30.71246 -30.16853 -28.02676 -25.65427 -25.60419 -24.10718 -23.52932 -22.36435 -21.20902 -20.18989 -19.58871 -18.80284 -17.87392 -17.32826 -17.08673 -16.62572 -15.70128 -15.64042 -15.45325 -15.31251 -15.01903 -14.88144 -14.45759 -14.04216 -13.92786 -13.52266 -13.28156 -13.02197 -12.94921 -12.65187 -12.61699 -12.31394 -11.75790 -11.74147 -11.67638 -11.26122 -11.17840 -11.13087 -10.74938 -10.29324 -10.24336 -9.94154 -9.79546 -9.20813 -9.10342 -8.77713 -8.29081 -8.09662 -6.75964 -6.32204 -4.06610 -0.03738 0.35826 0.99806 1.09304 1.56931 2.54019 2.76206 2.96832 3.02320 3.16773 3.19097 3.26692 3.41326 3.49322 3.95008 3.98552 4.18263 4.20035 4.40707 4.65521 4.97019 5.00288 5.03872 5.04677 5.13656 5.23837 5.42881 5.54857 5.61278 5.75383 5.81802 6.00036 6.14009 6.20203 6.44332 6.54324 6.56040 6.82841 6.87242 7.07717 7.16709 7.54690 7.90179 8.13267 8.29520 9.13994 10.74516 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.020615 B = 0.001966 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.885806 B =14238.516708 C =14764.613910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.053 4.053 3 N -0.128 5.128 4 N -0.339 5.339 5 C 0.528 3.472 6 N -0.473 5.473 7 N -0.512 5.512 8 C 0.570 3.430 9 O -0.528 6.528 10 C -0.147 4.147 11 C -0.087 4.087 12 C -0.138 4.138 13 C -0.049 4.049 14 C -0.107 4.107 15 S -0.031 6.031 16 C -0.521 4.521 17 H 0.077 0.923 18 C 0.073 3.927 19 N -0.869 5.869 20 Si 0.921 3.079 21 H -0.270 1.270 22 H -0.279 1.279 23 H -0.279 1.279 24 C -0.012 4.012 25 N -0.537 5.537 26 C 0.396 3.604 27 O -0.463 6.463 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.450 0.550 32 H 0.434 0.566 33 H 0.121 0.879 34 H 0.128 0.872 35 H 0.134 0.866 36 H 0.270 0.730 37 H 0.142 0.858 38 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.227 -6.014 5.276 29.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.208 4.208 3 N 0.020 4.980 4 N -0.200 5.200 5 C 0.168 3.832 6 N -0.205 5.205 7 N -0.264 5.264 8 C 0.359 3.641 9 O -0.403 6.403 10 C -0.154 4.154 11 C -0.107 4.107 12 C -0.157 4.157 13 C -0.070 4.070 14 C -0.218 4.218 15 S 0.203 5.797 16 C -0.668 4.668 17 H 0.095 0.905 18 C -0.136 4.136 19 N -0.504 5.504 20 Si 0.747 3.253 21 H -0.195 1.195 22 H -0.205 1.205 23 H -0.204 1.204 24 C -0.034 4.034 25 N -0.277 5.277 26 C 0.195 3.805 27 O -0.270 6.270 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.297 0.703 32 H 0.279 0.721 33 H 0.139 0.861 34 H 0.146 0.854 35 H 0.152 0.848 36 H 0.079 0.921 37 H 0.160 0.840 38 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -26.024 -5.645 5.580 27.207 hybrid contribution -1.130 -1.293 -1.711 2.424 sum -27.153 -6.938 3.869 28.292 Atomic orbital electron populations 1.20491 0.85797 1.04630 1.03628 1.23529 1.00709 0.90158 1.06449 1.73358 0.99265 1.23594 1.01737 1.73494 1.01191 1.23007 1.22294 1.20160 0.86485 0.86152 0.90393 1.42451 0.98820 1.01726 1.77466 1.44942 1.04958 0.98692 1.77818 1.18663 0.79036 0.90526 0.75895 1.90820 1.65046 1.34829 1.49611 1.19429 0.94377 0.90339 1.11213 1.21201 0.98802 0.92130 0.98521 1.21086 0.94756 0.97303 1.02579 1.22036 0.93252 0.98734 0.92947 1.22881 1.03870 0.93650 1.01365 1.83650 0.88431 1.95146 1.12460 1.22887 0.95214 1.58574 0.90155 0.90487 1.25010 0.95020 0.94279 0.99290 1.69989 0.99266 1.46817 1.34369 0.86061 0.78546 0.78016 0.82656 1.19487 1.20452 1.20425 1.21945 0.91555 0.98932 0.90997 1.67659 1.10974 1.28357 1.20661 1.19705 0.85794 0.86798 0.88160 1.84706 1.73620 1.34007 1.34683 0.90023 0.89711 0.89653 0.70257 0.72115 0.86143 0.85436 0.84785 0.92059 0.84033 0.72259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.35 10.01 36.01 0.36 0.02 16 2 C -0.05 -0.42 6.89 -82.05 -0.57 -0.98 16 3 N -0.13 -1.34 11.54 33.78 0.39 -0.95 16 4 N -0.34 -3.97 10.54 29.83 0.31 -3.66 16 5 C 0.53 6.16 8.61 -322.28 -2.78 3.39 16 6 N -0.47 -5.70 6.42 29.84 0.19 -5.51 16 7 N -0.51 -6.37 6.23 30.53 0.19 -6.18 16 8 C 0.57 8.79 7.89 -12.32 -0.10 8.69 16 9 O -0.53 -9.76 16.18 5.32 0.09 -9.67 16 10 C -0.15 -2.34 5.87 -105.00 -0.62 -2.96 16 11 C -0.09 -1.14 9.54 -39.12 -0.37 -1.51 16 12 C -0.14 -1.86 10.02 -39.68 -0.40 -2.25 16 13 C -0.05 -0.83 9.79 -39.25 -0.38 -1.21 16 14 C -0.11 -2.19 5.45 -38.99 -0.21 -2.41 16 15 S -0.03 -0.79 21.41 -107.50 -2.30 -3.09 16 16 C -0.52 -14.45 9.46 30.92 0.29 -14.16 16 17 H 0.08 2.12 7.79 -52.49 -0.41 1.71 16 18 C 0.07 2.03 5.49 -17.46 -0.10 1.93 16 19 N -0.87 -25.13 13.22 55.49 0.73 -24.39 16 20 Si 0.92 21.29 29.55 -169.99 -5.02 16.27 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 C -0.01 -0.24 9.34 -38.92 -0.36 -0.60 16 25 N -0.54 -5.76 10.59 -13.83 -0.15 -5.91 16 26 C 0.40 3.25 7.81 -16.62 -0.13 3.12 16 27 O -0.46 -2.36 12.73 -18.26 -0.23 -2.59 16 28 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.24 7.61 -51.93 -0.40 -0.15 16 31 H 0.45 5.39 8.12 -182.60 -1.48 3.91 16 32 H 0.43 4.64 5.96 -182.59 -1.09 3.55 16 33 H 0.12 1.14 6.40 -52.48 -0.34 0.80 16 34 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.13 2.16 8.06 -52.48 -0.42 1.73 16 36 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.14 2.95 7.65 -52.49 -0.40 2.55 16 38 H 0.42 -0.13 9.06 45.56 0.41 0.28 16 LS Contribution 359.23 15.07 5.41 5.41 Total: -1.00 -34.72 359.23 -10.27 -44.99 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -4.53 Total: 4.23 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -5.36 Total: -8.94 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: 1.67 Total: -46.60 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -0.15 Total: -12.27 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -0.79 SS G_CDS: -2.30 Total: -3.09 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.72 -10.27 -44.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160450953.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.481 kcal (2) G-P(sol) polarization free energy of solvation -34.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds