Wall clock time and date at job start Wed Apr 1 2020 04:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35982 * 117.00562 * 2 1 4 4 C 1.38527 * 120.08035 * 359.72684 * 3 2 1 5 5 C 1.38266 * 120.02092 * 179.76735 * 4 3 2 6 6 S 1.76198 * 119.90740 * 180.27705 * 5 4 3 7 7 C 1.81407 * 104.44543 * 270.22887 * 6 5 4 8 8 O 1.42089 * 104.28046 * 26.30150 * 6 5 4 9 9 O 1.42107 * 104.27874 * 154.16088 * 6 5 4 10 10 C 1.38273 * 120.18516 * 0.50632 * 5 4 3 11 11 C 1.38200 * 120.16850 * 359.74592 * 10 5 4 12 12 C 1.38763 * 119.97512 * 359.97438 * 11 10 5 13 13 N 1.39970 * 120.09248 * 179.97438 * 12 11 10 14 14 C 1.38233 * 119.99779 * 354.13237 * 13 12 11 15 15 C 1.39023 * 120.00423 * 300.40830 * 14 13 12 16 16 H 1.07995 * 120.00724 * 152.18675 * 15 14 13 17 17 C 1.40829 * 119.99695 * 332.18562 * 15 14 13 18 18 N 1.30344 * 119.99851 * 2.92053 * 17 15 14 19 19 Si 1.86793 * 120.00076 * 182.91479 * 17 15 14 20 20 H 1.48494 * 109.47259 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46885 * 120.00427 * 19 17 15 22 22 H 1.48500 * 109.47468 * 240.00444 * 19 17 15 23 23 C 1.41183 * 120.00363 * 120.40445 * 14 13 12 24 24 C 1.43193 * 120.00316 * 174.76358 * 23 14 13 25 25 N 7.55772 * 174.75025 * 123.27519 * 2 1 3 26 26 C 1.43206 * 119.99504 * 354.76976 * 23 14 13 27 27 N 5.13814 * 140.01480 * 111.91346 * 2 1 3 28 28 H 1.09006 * 109.47354 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46961 * 59.99587 * 1 2 3 30 30 H 1.09000 * 109.47419 * 299.99877 * 1 2 3 31 31 H 1.08005 * 119.98967 * 0.02562 * 4 3 2 32 32 H 1.08995 * 109.47253 * 60.00374 * 7 6 5 33 33 H 1.09001 * 109.46857 * 180.02562 * 7 6 5 34 34 H 1.08996 * 109.47124 * 300.00055 * 7 6 5 35 35 H 1.07999 * 119.92069 * 179.72332 * 10 5 4 36 36 H 1.08001 * 120.01607 * 179.97438 * 11 10 5 37 37 H 0.96999 * 120.00008 * 174.12601 * 13 12 11 38 38 H 0.96994 * 120.00309 * 185.00253 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2937 2.3745 -0.0057 5 6 1.9228 3.6057 -0.0008 6 16 0.9624 5.0829 -0.0008 7 6 0.7157 5.4625 -1.7574 8 8 -0.2656 4.7026 0.6044 9 8 1.8085 6.0510 0.6045 10 6 3.3034 3.6810 -0.0008 11 6 4.0620 2.5258 -0.0004 12 6 3.4377 1.2865 0.0006 13 7 4.2036 0.1149 0.0005 14 6 5.5785 0.1880 -0.1229 15 6 6.1452 0.7738 -1.2492 16 1 7.1180 1.2382 -1.1847 17 6 5.4506 0.7615 -2.4742 18 7 4.2528 0.2517 -2.5391 19 14 6.2459 1.4759 -4.0060 20 1 7.5983 1.9879 -3.6687 21 1 6.3615 0.4188 -5.0425 22 1 5.4102 2.5885 -4.5247 23 6 6.4073 -0.3322 0.8947 24 6 7.8280 -0.3585 0.7176 25 7 8.9550 -0.3794 0.5781 26 6 5.8271 -0.8337 2.1041 27 7 5.3658 -1.2322 3.0632 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 0.5138 0.8900 31 1 0.2150 2.3194 -0.0098 32 1 0.1914 4.6363 -2.2375 33 1 0.1243 6.3731 -1.8528 34 1 1.6837 5.6064 -2.2374 35 1 3.7904 4.6450 -0.0015 36 1 5.1402 2.5875 -0.0008 37 1 3.7696 -0.7482 0.0871 38 1 3.8032 0.1770 -3.3953 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169082910.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:51 Heat of formation + Delta-G solvation = -15.281853 kcal Electronic energy + Delta-G solvation = -27876.452475 eV Core-core repulsion = 23812.196612 eV Total energy + Delta-G solvation = -4064.255863 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.07064 -37.90043 -36.96133 -36.65239 -35.79969 -35.30796 -34.80215 -33.70553 -31.31526 -29.95681 -29.57689 -28.47480 -27.27710 -27.01154 -22.99345 -22.15470 -21.13690 -19.11570 -19.01778 -18.14024 -17.38929 -17.15132 -16.30588 -16.18533 -16.05129 -15.77743 -15.45107 -15.40243 -14.85251 -13.92577 -13.91611 -13.47385 -13.34535 -13.16022 -12.97827 -12.76310 -12.70924 -12.59226 -12.36351 -11.98732 -11.97263 -11.91606 -11.78516 -11.68258 -11.60795 -11.54640 -11.29194 -11.10579 -11.09168 -10.99310 -10.91065 -10.79385 -10.35395 -10.13950 -10.11556 -8.42617 -8.13792 -7.76167 -6.80533 -5.56704 0.20664 1.31022 1.77340 2.10925 2.63867 2.71850 2.77206 3.06505 3.33129 3.49580 3.73732 3.79427 3.87708 3.98434 4.13473 4.21231 4.21782 4.32369 4.70023 4.90173 5.03929 5.07821 5.20409 5.30475 5.32599 5.48183 5.53986 5.58354 5.65958 5.86276 6.08920 6.13957 6.16461 6.29256 6.41014 6.58774 6.93220 7.03042 7.14831 7.52307 7.59947 7.72740 8.16393 8.35483 8.87104 9.03676 9.14813 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.010285 B = 0.004357 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.823165 B = 6424.992757 C = 7242.475549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.314 6.314 3 C 0.040 3.960 4 C -0.080 4.080 5 C -0.696 4.696 6 S 2.506 3.494 7 C -0.654 4.654 8 O -0.951 6.951 9 O -0.946 6.946 10 C -0.009 4.009 11 C -0.178 4.178 12 C 0.299 3.701 13 N -0.640 5.640 14 C 0.377 3.623 15 C -0.384 4.384 16 H 0.113 0.887 17 C 0.070 3.930 18 N -0.723 5.723 19 Si 0.926 3.074 20 H -0.248 1.248 21 H -0.263 1.263 22 H -0.262 1.262 23 C -0.301 4.301 24 C 0.325 3.675 25 N -0.527 5.527 26 C 0.306 3.694 27 N -0.526 5.526 28 H 0.095 0.905 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.136 0.864 32 H 0.128 0.872 33 H 0.124 0.876 34 H 0.131 0.869 35 H 0.135 0.865 36 H 0.149 0.851 37 H 0.409 0.591 38 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.518 7.532 -8.553 16.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.228 6.228 3 C -0.009 4.009 4 C -0.101 4.101 5 C -0.788 4.788 6 S 2.688 3.312 7 C -0.803 4.803 8 O -0.948 6.948 9 O -0.943 6.943 10 C -0.030 4.030 11 C -0.202 4.202 12 C 0.191 3.809 13 N -0.257 5.257 14 C 0.273 3.727 15 C -0.412 4.412 16 H 0.130 0.870 17 C -0.161 4.161 18 N -0.341 5.341 19 Si 0.747 3.253 20 H -0.170 1.170 21 H -0.188 1.188 22 H -0.187 1.187 23 C -0.319 4.319 24 C 0.016 3.984 25 N -0.209 5.209 26 C -0.002 4.002 27 N -0.208 5.208 28 H 0.113 0.887 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.154 0.846 32 H 0.147 0.853 33 H 0.142 0.858 34 H 0.149 0.851 35 H 0.153 0.847 36 H 0.167 0.833 37 H 0.246 0.754 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.806 7.126 -6.712 14.581 hybrid contribution -0.216 -0.519 -1.847 1.930 sum -11.023 6.607 -8.558 15.440 Atomic orbital electron populations 1.22967 0.79089 1.03453 1.00998 1.86022 1.20600 1.26161 1.89992 1.18348 0.90394 0.84729 1.07403 1.20452 0.99212 0.90500 0.99986 1.29505 1.06720 1.15732 1.26878 1.04676 0.74497 0.74797 0.77217 1.30273 1.11945 1.11604 1.26500 1.93534 1.44967 1.82996 1.73299 1.93557 1.67299 1.60266 1.73166 1.20511 0.91124 0.98798 0.92536 1.20898 1.01391 0.89663 1.08227 1.17207 0.86581 0.87466 0.89640 1.41704 1.04413 1.06362 1.73208 1.16845 0.80004 0.87050 0.88849 1.20332 1.03354 1.26031 0.91509 0.86958 1.26497 0.93962 0.93063 1.02554 1.69544 1.10062 1.24553 1.29991 0.85870 0.81097 0.79781 0.78504 1.17027 1.18767 1.18677 1.13029 0.84248 1.38766 0.95836 1.24631 0.91226 0.90708 0.91804 1.81059 1.12185 1.17318 1.10337 1.25220 0.92587 0.90763 0.91604 1.81097 1.09300 1.17731 1.12643 0.88665 0.93106 0.92869 0.84650 0.85323 0.85767 0.85069 0.84683 0.83332 0.75354 0.88750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.31 -4.92 9.75 -19.68 -0.19 -5.12 16 3 C 0.04 0.66 6.70 -39.07 -0.26 0.40 16 4 C -0.08 -1.19 8.46 -39.46 -0.33 -1.52 16 5 C -0.70 -9.86 5.66 -39.56 -0.22 -10.08 16 6 S 2.51 29.47 5.80 -107.50 -0.62 28.84 16 7 C -0.65 -4.80 10.80 101.05 1.09 -3.71 16 8 O -0.95 -13.69 17.12 -57.54 -0.99 -14.68 16 9 O -0.95 -13.87 17.12 -57.54 -0.98 -14.86 16 10 C -0.01 -0.14 9.46 -39.58 -0.37 -0.51 16 11 C -0.18 -3.03 8.77 -39.40 -0.35 -3.37 16 12 C 0.30 5.35 5.25 -83.54 -0.44 4.91 16 13 N -0.64 -11.94 3.29 -8.06 -0.03 -11.97 16 14 C 0.38 7.37 4.99 -83.57 -0.42 6.95 16 15 C -0.38 -7.24 6.53 -38.31 -0.25 -7.49 16 16 H 0.11 2.13 7.29 -52.49 -0.38 1.75 16 17 C 0.07 1.22 5.21 -17.20 -0.09 1.13 16 18 N -0.72 -12.77 10.92 55.59 0.61 -12.16 16 19 Si 0.93 13.81 29.57 -169.99 -5.03 8.79 16 20 H -0.25 -3.83 7.11 56.52 0.40 -3.43 16 21 H -0.26 -3.99 7.11 56.52 0.40 -3.59 16 22 H -0.26 -3.82 7.11 56.52 0.40 -3.41 16 23 C -0.30 -6.30 5.88 -104.93 -0.62 -6.92 16 24 C 0.32 7.13 14.05 -22.49 -0.32 6.82 16 25 N -0.53 -12.10 18.54 41.83 0.78 -11.32 16 26 C 0.31 6.77 14.82 -22.46 -0.33 6.44 16 27 N -0.53 -12.24 18.54 41.85 0.78 -11.46 16 28 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.05 0.50 7.65 -51.93 -0.40 0.10 16 30 H 0.05 0.57 7.68 -51.93 -0.40 0.17 16 31 H 0.14 1.70 5.81 -52.48 -0.30 1.40 16 32 H 0.13 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.12 0.67 8.14 -51.92 -0.42 0.25 16 34 H 0.13 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.14 1.72 7.56 -52.49 -0.40 1.33 16 36 H 0.15 2.52 6.14 -52.49 -0.32 2.20 16 37 H 0.41 7.69 8.20 -40.82 -0.33 7.36 16 38 H 0.30 4.84 8.29 -40.82 -0.34 4.50 16 LS Contribution 359.55 15.07 5.42 5.42 Total: -1.00 -28.77 359.55 -5.54 -34.31 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -3.36 Total: 9.84 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -1.92 Total: -5.64 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: 2.13 Total: -46.91 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: -2.16 Total: -34.65 kcal Atomic # 14 Polarization: 13.81 SS G_CDS: -5.03 Total: 8.79 kcal Atomic # 16 Polarization: 29.47 SS G_CDS: -0.62 Total: 28.84 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.77 -5.54 -34.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169082910.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.027 kcal (2) G-P(sol) polarization free energy of solvation -28.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds