Wall clock time and date at job start Wed Apr 1 2020 04:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35982 * 117.00562 * 2 1 4 4 C 1.38527 * 120.08035 * 359.72684 * 3 2 1 5 5 C 1.38266 * 120.02092 * 179.76735 * 4 3 2 6 6 S 1.76198 * 119.90740 * 180.27705 * 5 4 3 7 7 C 1.81407 * 104.44543 * 270.22887 * 6 5 4 8 8 O 1.42089 * 104.28046 * 26.30150 * 6 5 4 9 9 O 1.42107 * 104.27874 * 154.16088 * 6 5 4 10 10 C 1.38273 * 120.18516 * 0.50632 * 5 4 3 11 11 C 1.38200 * 120.16850 * 359.74592 * 10 5 4 12 12 C 1.38763 * 119.97512 * 359.97438 * 11 10 5 13 13 N 1.39970 * 120.09248 * 179.97438 * 12 11 10 14 14 C 1.38233 * 119.99779 * 354.13237 * 13 12 11 15 15 C 1.39023 * 120.00423 * 300.40830 * 14 13 12 16 16 H 1.07995 * 120.00724 * 152.18675 * 15 14 13 17 17 C 1.40829 * 119.99695 * 332.18562 * 15 14 13 18 18 N 1.30344 * 119.99851 * 2.92053 * 17 15 14 19 19 Si 1.86793 * 120.00076 * 182.91479 * 17 15 14 20 20 H 1.48494 * 109.47259 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46885 * 120.00427 * 19 17 15 22 22 H 1.48500 * 109.47468 * 240.00444 * 19 17 15 23 23 C 1.41183 * 120.00363 * 120.40445 * 14 13 12 24 24 C 1.43193 * 120.00316 * 174.76358 * 23 14 13 25 25 N 7.55772 * 174.75025 * 123.27519 * 2 1 3 26 26 C 1.43206 * 119.99504 * 354.76976 * 23 14 13 27 27 N 5.13814 * 140.01480 * 111.91346 * 2 1 3 28 28 H 1.09006 * 109.47354 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46961 * 59.99587 * 1 2 3 30 30 H 1.09000 * 109.47419 * 299.99877 * 1 2 3 31 31 H 1.08005 * 119.98967 * 0.02562 * 4 3 2 32 32 H 1.08995 * 109.47253 * 60.00374 * 7 6 5 33 33 H 1.09001 * 109.46857 * 180.02562 * 7 6 5 34 34 H 1.08996 * 109.47124 * 300.00055 * 7 6 5 35 35 H 1.07999 * 119.92069 * 179.72332 * 10 5 4 36 36 H 1.08001 * 120.01607 * 179.97438 * 11 10 5 37 37 H 0.96999 * 120.00008 * 174.12601 * 13 12 11 38 38 H 0.96994 * 120.00309 * 185.00253 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2937 2.3745 -0.0057 5 6 1.9228 3.6057 -0.0008 6 16 0.9624 5.0829 -0.0008 7 6 0.7157 5.4625 -1.7574 8 8 -0.2656 4.7026 0.6044 9 8 1.8085 6.0510 0.6045 10 6 3.3034 3.6810 -0.0008 11 6 4.0620 2.5258 -0.0004 12 6 3.4377 1.2865 0.0006 13 7 4.2036 0.1149 0.0005 14 6 5.5785 0.1880 -0.1229 15 6 6.1452 0.7738 -1.2492 16 1 7.1180 1.2382 -1.1847 17 6 5.4506 0.7615 -2.4742 18 7 4.2528 0.2517 -2.5391 19 14 6.2459 1.4759 -4.0060 20 1 7.5983 1.9879 -3.6687 21 1 6.3615 0.4188 -5.0425 22 1 5.4102 2.5885 -4.5247 23 6 6.4073 -0.3322 0.8947 24 6 7.8280 -0.3585 0.7176 25 7 8.9550 -0.3794 0.5781 26 6 5.8271 -0.8337 2.1041 27 7 5.3658 -1.2322 3.0632 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 0.5138 0.8900 31 1 0.2150 2.3194 -0.0098 32 1 0.1914 4.6363 -2.2375 33 1 0.1243 6.3731 -1.8528 34 1 1.6837 5.6064 -2.2374 35 1 3.7904 4.6450 -0.0015 36 1 5.1402 2.5875 -0.0008 37 1 3.7696 -0.7482 0.0871 38 1 3.8032 0.1770 -3.3953 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169082910.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:51 Heat of formation + Delta-G solvation = -34.080978 kcal Electronic energy + Delta-G solvation = -27877.267667 eV Core-core repulsion = 23812.196612 eV Total energy + Delta-G solvation = -4065.071055 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.28526 -39.22937 -38.03670 -37.90348 -36.96545 -36.79780 -36.55648 -35.10129 -32.74808 -31.14353 -30.27366 -29.70587 -28.79884 -28.03232 -24.30077 -23.34419 -22.52358 -20.61830 -20.12004 -19.26116 -18.88285 -18.42500 -17.64928 -17.29995 -17.02867 -16.99807 -16.51196 -16.43760 -16.06098 -15.23089 -15.14917 -14.59356 -14.45904 -14.38453 -14.09812 -13.97603 -13.85635 -13.84789 -13.71101 -13.46871 -13.42988 -13.32332 -13.02591 -13.02112 -12.95209 -12.73868 -12.68957 -12.53582 -12.40878 -12.10308 -12.03136 -11.85756 -11.50586 -11.47167 -11.36630 -9.83011 -9.45488 -9.10794 -8.15241 -7.15097 -0.67955 0.06376 0.54711 0.72402 1.40509 1.52720 1.57135 2.02638 2.09985 2.10812 2.20851 2.27857 2.46229 2.57787 2.72495 2.81515 3.20688 3.35528 3.37526 3.81388 3.89144 4.19146 4.20539 4.21411 4.35121 4.46134 4.50827 4.57452 4.68938 4.73810 4.77264 4.91000 5.01415 5.03626 5.20148 5.33094 5.43815 5.63207 5.87566 6.04449 6.19498 6.44628 6.80341 6.89809 7.16749 7.32098 7.78241 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.010285 B = 0.004357 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.823165 B = 6424.992757 C = 7242.475549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.334 6.334 3 C 0.031 3.969 4 C -0.084 4.084 5 C -0.694 4.694 6 S 2.515 3.485 7 C -0.626 4.626 8 O -0.981 6.981 9 O -0.979 6.979 10 C -0.017 4.017 11 C -0.192 4.192 12 C 0.271 3.729 13 N -0.644 5.644 14 C 0.373 3.627 15 C -0.375 4.375 16 H 0.108 0.892 17 C 0.046 3.954 18 N -0.723 5.723 19 Si 0.980 3.020 20 H -0.258 1.258 21 H -0.263 1.263 22 H -0.248 1.248 23 C -0.320 4.320 24 C 0.331 3.669 25 N -0.553 5.553 26 C 0.314 3.686 27 N -0.557 5.557 28 H 0.115 0.885 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.157 0.843 32 H 0.150 0.850 33 H 0.154 0.846 34 H 0.150 0.850 35 H 0.154 0.846 36 H 0.140 0.860 37 H 0.404 0.596 38 H 0.311 0.689 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.467 9.350 -11.349 19.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C -0.017 4.017 4 C -0.105 4.105 5 C -0.782 4.782 6 S 2.699 3.301 7 C -0.780 4.780 8 O -0.978 6.978 9 O -0.977 6.977 10 C -0.037 4.037 11 C -0.215 4.215 12 C 0.165 3.835 13 N -0.262 5.262 14 C 0.268 3.732 15 C -0.403 4.403 16 H 0.126 0.874 17 C -0.185 4.185 18 N -0.342 5.342 19 Si 0.799 3.201 20 H -0.181 1.181 21 H -0.187 1.187 22 H -0.172 1.172 23 C -0.339 4.339 24 C 0.024 3.976 25 N -0.236 5.236 26 C 0.008 3.992 27 N -0.240 5.240 28 H 0.133 0.867 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.175 0.825 32 H 0.168 0.832 33 H 0.172 0.828 34 H 0.168 0.832 35 H 0.172 0.828 36 H 0.158 0.842 37 H 0.240 0.760 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.774 8.921 -9.448 18.221 hybrid contribution 0.171 -0.949 -1.144 1.496 sum -12.603 7.972 -10.592 18.291 Atomic orbital electron populations 1.23279 0.76971 1.05212 1.01994 1.86000 1.22874 1.26043 1.89960 1.18526 0.90237 0.85681 1.07297 1.20762 1.00280 0.90128 0.99297 1.30015 1.06767 1.16972 1.24494 1.04475 0.73006 0.73163 0.79488 1.30043 1.14021 1.13817 1.20121 1.93496 1.45337 1.83070 1.75884 1.93517 1.67997 1.60302 1.75853 1.20759 0.91678 0.98937 0.92294 1.20977 1.01296 0.90289 1.08931 1.17435 0.87346 0.87288 0.91443 1.41563 1.03865 1.06485 1.74318 1.16830 0.80547 0.87250 0.88583 1.20515 1.03086 1.24743 0.91909 0.87378 1.27043 0.94321 0.93266 1.03821 1.69553 1.10341 1.23063 1.31204 0.85090 0.79937 0.79405 0.75626 1.18105 1.18699 1.17207 1.13100 0.83983 1.40654 0.96190 1.24774 0.91351 0.90181 0.91275 1.81039 1.12650 1.18768 1.11128 1.25401 0.92039 0.90234 0.91504 1.81072 1.10124 1.19345 1.13498 0.86709 0.91328 0.92517 0.82544 0.83171 0.82796 0.83178 0.82813 0.84214 0.75978 0.87636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.81 113.37 1.11 1.53 16 2 O -0.33 -10.33 9.75 -93.35 -0.91 -11.24 16 3 C 0.03 1.02 6.70 22.60 0.15 1.17 16 4 C -0.08 -2.35 8.46 22.35 0.19 -2.16 16 5 C -0.69 -18.42 5.66 22.28 0.13 -18.29 16 6 S 2.51 52.66 5.80 -56.49 -0.33 52.34 16 7 C -0.63 -5.92 10.80 113.37 1.22 -4.69 16 8 O -0.98 -26.22 17.12 -127.65 -2.19 -28.41 16 9 O -0.98 -27.05 17.12 -127.65 -2.18 -29.23 16 10 C -0.02 -0.49 9.46 22.27 0.21 -0.28 16 11 C -0.19 -6.52 8.77 22.39 0.20 -6.32 16 12 C 0.27 9.73 5.25 38.23 0.20 9.93 16 13 N -0.64 -24.60 3.29 -179.43 -0.59 -25.19 16 14 C 0.37 14.93 4.99 39.05 0.19 15.12 16 15 C -0.38 -14.15 6.53 23.09 0.15 -14.00 16 16 H 0.11 4.13 7.29 -2.91 -0.02 4.11 16 17 C 0.05 1.55 5.21 85.55 0.45 1.99 16 18 N -0.72 -24.64 10.92 21.98 0.24 -24.40 16 19 Si 0.98 26.57 29.57 68.60 2.03 28.60 16 20 H -0.26 -7.41 7.11 99.48 0.71 -6.70 16 21 H -0.26 -7.11 7.11 99.48 0.71 -6.41 16 22 H -0.25 -6.19 7.11 99.48 0.71 -5.48 16 23 C -0.32 -13.88 5.88 -20.06 -0.12 -14.00 16 24 C 0.33 14.94 14.05 88.33 1.24 16.18 16 25 N -0.55 -25.89 18.54 19.00 0.35 -25.53 16 26 C 0.31 14.43 14.82 88.33 1.31 15.74 16 27 N -0.56 -26.83 18.54 19.01 0.35 -26.47 16 28 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 29 H 0.07 1.17 7.65 -2.39 -0.02 1.15 16 30 H 0.06 1.13 7.68 -2.39 -0.02 1.11 16 31 H 0.16 3.58 5.81 -2.91 -0.02 3.57 16 32 H 0.15 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.15 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.15 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.15 3.73 7.56 -2.91 -0.02 3.70 16 36 H 0.14 4.86 6.14 -2.91 -0.02 4.85 16 37 H 0.40 15.72 8.20 -92.71 -0.76 14.96 16 38 H 0.31 9.38 8.29 -92.71 -0.77 8.62 16 Total: -1.00 -63.39 359.55 3.81 -59.59 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: 0.40 Total: 28.05 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: 6.63 Total: 1.92 kcal Atomic # 7 Polarization: -101.96 SS G_CDS: 0.35 Total: -101.60 kcal Atomic # 8 Polarization: -63.60 SS G_CDS: -5.28 Total: -68.88 kcal Atomic # 14 Polarization: 26.57 SS G_CDS: 2.03 Total: 28.60 kcal Atomic # 16 Polarization: 52.66 SS G_CDS: -0.33 Total: 52.34 kcal Total: -63.39 3.81 -59.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169082910.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.506 kcal (2) G-P(sol) polarization free energy of solvation -63.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds