Wall clock time and date at job start Wed Apr 1 2020 04:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86800 * 120.00273 * 2 1 4 4 H 1.48505 * 109.47082 * 275.77942 * 3 2 1 5 5 H 1.48494 * 109.46997 * 35.77849 * 3 2 1 6 6 H 1.48503 * 109.47107 * 155.77996 * 3 2 1 7 7 C 1.38953 * 119.99865 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99879 * 340.39451 * 7 2 1 9 9 N 1.37100 * 120.00003 * 160.39895 * 7 2 1 10 10 C 1.46499 * 120.00023 * 321.67448 * 9 7 2 11 11 C 1.50706 * 109.47147 * 269.99919 * 10 9 7 12 12 C 1.38227 * 119.99761 * 269.72983 * 11 10 9 13 13 C 1.38244 * 119.99874 * 179.76545 * 12 11 10 14 14 C 1.38232 * 119.99363 * 0.50568 * 13 12 11 15 15 C 1.38240 * 120.00464 * 359.74520 * 14 13 12 16 16 C 1.38232 * 119.99613 * 90.00100 * 11 10 9 17 17 C 1.34780 * 119.99879 * 141.67464 * 9 7 2 18 18 O 1.21284 * 119.99940 * 174.92515 * 17 9 7 19 19 C 1.50700 * 119.99898 * 355.20131 * 17 9 7 20 20 N 1.46497 * 109.47277 * 184.94279 * 19 17 9 21 21 N 1.28386 * 119.16431 * 267.18336 * 20 19 17 22 22 C 1.30484 * 122.43235 * 179.97438 * 21 20 19 23 23 Cl 1.73604 * 119.77593 * 179.97438 * 22 21 20 24 24 C 1.40592 * 120.44854 * 0.02562 * 22 21 20 25 25 C 1.36573 * 118.30236 * 359.97438 * 24 22 21 26 26 C 1.34666 * 119.16308 * 86.90465 * 20 19 17 27 27 O 1.22071 * 120.33546 * 0.02562 * 26 20 19 28 28 H 0.97001 * 119.99573 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47051 * 30.00056 * 10 9 7 30 30 H 1.08998 * 109.46771 * 149.99887 * 10 9 7 31 31 H 1.07996 * 120.00796 * 359.97438 * 12 11 10 32 32 H 1.07993 * 120.00263 * 180.22627 * 13 12 11 33 33 H 1.08006 * 120.00104 * 179.72426 * 14 13 12 34 34 H 1.07996 * 119.99805 * 179.97438 * 15 14 13 35 35 H 1.08001 * 120.00617 * 359.97438 * 16 11 10 36 36 H 1.08997 * 109.47121 * 304.94313 * 19 17 9 37 37 H 1.09004 * 109.47040 * 64.94297 * 19 17 9 38 38 H 1.07997 * 120.85269 * 179.97438 * 24 22 21 39 39 H 1.08003 * 121.09408 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.3737 2.1169 -1.3930 5 1 1.5121 2.6143 0.8185 6 1 3.6015 1.4079 0.5744 7 6 2.0089 -1.2034 -0.0005 8 1 1.5158 -2.1117 0.3129 9 7 3.3203 -1.2376 -0.3989 10 6 3.7674 -0.4066 -1.5194 11 6 3.6190 -1.1766 -2.8064 12 6 4.6643 -1.9518 -3.2724 13 6 4.5264 -2.6619 -4.4505 14 6 3.3470 -2.5884 -5.1677 15 6 2.3036 -1.8089 -4.7043 16 6 2.4396 -1.1030 -3.5237 17 6 4.1981 -2.0359 0.2405 18 8 5.3355 -2.1365 -0.1684 19 6 3.7647 -2.8082 1.4598 20 7 4.9200 -3.5012 2.0351 21 7 5.1657 -4.7099 1.6788 22 6 6.1770 -5.3866 2.1502 23 17 6.4444 -7.0182 1.6208 24 6 7.0508 -4.8037 3.0846 25 6 6.8119 -3.5186 3.4806 26 6 5.7006 -2.8524 2.9201 27 8 5.4470 -1.7014 3.2381 28 1 -0.4849 0.8401 0.0004 29 1 3.1613 0.4981 -1.5653 30 1 4.8136 -0.1362 -1.3763 31 1 5.5874 -2.0055 -2.7145 32 1 5.3417 -3.2705 -4.8127 33 1 3.2408 -3.1396 -6.0904 34 1 1.3824 -1.7512 -5.2650 35 1 1.6244 -0.4941 -3.1616 36 1 3.3493 -2.1208 2.1966 37 1 3.0068 -3.5387 1.1766 38 1 7.8895 -5.3579 3.4793 39 1 7.4546 -3.0267 4.1958 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181892372.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:23 Heat of formation + Delta-G solvation = 40.389448 kcal Electronic energy + Delta-G solvation = -28034.885698 eV Core-core repulsion = 23971.000217 eV Total energy + Delta-G solvation = -4063.885481 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -41.98526 -39.38140 -38.17942 -37.74253 -36.78788 -35.27659 -34.48314 -32.34270 -31.52817 -30.99587 -30.38032 -28.48021 -25.97942 -25.10592 -24.47917 -23.64241 -22.01992 -21.08280 -19.50999 -18.48490 -18.13771 -17.31408 -16.87128 -16.48726 -16.06085 -15.78707 -15.53090 -14.93735 -14.66733 -14.40088 -14.30609 -13.85445 -13.77500 -13.45214 -13.36375 -12.94313 -12.83704 -12.79038 -12.51372 -12.09940 -11.92953 -11.76656 -11.59540 -11.49018 -11.11851 -11.03619 -10.84138 -10.55281 -10.47139 -10.32803 -10.02518 -9.66781 -9.41723 -8.98200 -8.41349 -8.38738 -8.16816 -8.02266 -6.64912 -4.28678 0.48660 1.37201 1.52392 1.80010 1.91326 2.58856 2.94313 3.13103 3.22564 3.39313 3.46821 3.97516 4.07429 4.24793 4.46094 4.53470 4.61940 4.77374 5.32697 5.33181 5.37673 5.44732 5.55254 5.58466 5.65112 5.68476 5.78749 5.82007 5.88962 5.96557 6.02829 6.13127 6.24715 6.48057 6.57353 6.94174 6.96100 7.11907 7.23059 7.50300 7.66185 7.85431 8.02733 8.14676 8.72810 9.08753 9.42525 10.44294 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.010157 B = 0.004349 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.105800 B = 6436.191533 C = 8269.318607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.076 3.924 3 Si 0.870 3.130 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.257 1.257 7 C -0.354 4.354 8 H 0.107 0.893 9 N -0.447 5.447 10 C 0.140 3.860 11 C -0.085 4.085 12 C -0.098 4.098 13 C -0.132 4.132 14 C -0.127 4.127 15 C -0.129 4.129 16 C -0.090 4.090 17 C 0.475 3.525 18 O -0.586 6.586 19 C 0.110 3.890 20 N -0.305 5.305 21 N -0.187 5.187 22 C 0.087 3.913 23 Cl -0.005 7.005 24 C -0.060 4.060 25 C -0.174 4.174 26 C 0.480 3.520 27 O -0.516 6.516 28 H 0.278 0.722 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.125 0.875 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.124 0.876 36 H 0.137 0.863 37 H 0.125 0.875 38 H 0.157 0.843 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.108 -8.736 0.807 12.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.134 4.134 3 Si 0.697 3.303 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.181 1.181 7 C -0.481 4.481 8 H 0.124 0.876 9 N -0.167 5.167 10 C 0.017 3.983 11 C -0.086 4.086 12 C -0.116 4.116 13 C -0.150 4.150 14 C -0.146 4.146 15 C -0.147 4.147 16 C -0.108 4.108 17 C 0.263 3.737 18 O -0.470 6.470 19 C -0.012 4.012 20 N -0.126 5.126 21 N -0.015 5.015 22 C -0.109 4.109 23 Cl 0.022 6.978 24 C -0.083 4.083 25 C -0.204 4.204 26 C 0.278 3.722 27 O -0.392 6.392 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.143 0.857 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.134 0.866 35 H 0.142 0.858 36 H 0.155 0.845 37 H 0.143 0.857 38 H 0.175 0.825 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 8.572 -8.119 0.194 11.808 hybrid contribution 0.711 0.793 0.355 1.123 sum 9.282 -7.326 0.549 11.838 Atomic orbital electron populations 1.69736 1.06210 1.28544 1.43727 1.25310 0.95069 0.98517 0.94494 0.87034 0.81597 0.83411 0.78301 1.19791 1.21035 1.18110 1.19102 0.84435 0.96552 1.47994 0.87577 1.43580 1.08982 1.38835 1.25284 1.20639 1.00425 0.93034 0.84173 1.20207 0.94039 0.98626 0.95758 1.21194 0.99133 0.95828 0.95488 1.21037 0.97708 1.00338 0.95939 1.21029 0.94003 0.99747 0.99798 1.21063 0.98585 0.98165 0.96921 1.21149 0.96937 0.98781 0.93972 1.20095 0.85036 0.83729 0.84834 1.90568 1.19845 1.68180 1.68417 1.21837 0.84468 0.97445 0.97485 1.46384 1.25513 1.06825 1.33905 1.70280 1.17707 0.96176 1.17334 1.21775 0.96588 0.90878 1.01658 1.98400 1.94906 1.14373 1.90111 1.22049 0.98027 0.94975 0.93290 1.22722 0.99172 0.94974 1.03548 1.18036 0.84915 0.88154 0.81129 1.91029 1.71307 1.15853 1.61056 0.91147 0.90803 0.90362 0.85736 0.86793 0.86871 0.86572 0.85758 0.84522 0.85701 0.82496 0.81310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.92 13.96 55.50 0.77 -21.15 16 2 C 0.08 1.87 5.35 -17.47 -0.09 1.78 16 3 Si 0.87 19.74 24.86 -169.99 -4.23 15.52 16 4 H -0.27 -5.88 6.73 56.52 0.38 -5.50 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 6 H -0.26 -6.09 7.11 56.52 0.40 -5.68 16 7 C -0.35 -8.63 8.98 -14.93 -0.13 -8.77 16 8 H 0.11 2.66 7.42 -52.49 -0.39 2.27 16 9 N -0.45 -10.40 2.16 -116.10 -0.25 -10.65 16 10 C 0.14 3.07 4.28 -5.19 -0.02 3.05 16 11 C -0.09 -1.73 5.46 -104.63 -0.57 -2.30 16 12 C -0.10 -1.86 9.57 -39.58 -0.38 -2.24 16 13 C -0.13 -2.17 10.05 -39.58 -0.40 -2.56 16 14 C -0.13 -1.97 10.05 -39.58 -0.40 -2.36 16 15 C -0.13 -2.14 10.05 -39.58 -0.40 -2.54 16 16 C -0.09 -1.73 9.70 -39.59 -0.38 -2.12 16 17 C 0.48 10.84 7.65 -10.98 -0.08 10.75 16 18 O -0.59 -14.24 15.29 5.55 0.08 -14.15 16 19 C 0.11 2.16 4.72 -5.20 -0.02 2.14 16 20 N -0.30 -5.58 2.72 -64.51 -0.18 -5.76 16 21 N -0.19 -3.13 10.86 33.01 0.36 -2.77 16 22 C 0.09 1.16 7.37 -17.24 -0.13 1.04 16 23 Cl -0.01 -0.06 29.13 -51.86 -1.51 -1.57 16 24 C -0.06 -0.65 9.96 -39.30 -0.39 -1.04 16 25 C -0.17 -2.26 10.13 -39.07 -0.40 -2.66 16 26 C 0.48 8.69 7.44 -15.19 -0.11 8.58 16 27 O -0.52 -11.08 16.70 4.85 0.08 -11.00 16 28 H 0.28 6.75 8.31 -40.82 -0.34 6.41 16 29 H 0.07 1.64 3.11 -51.93 -0.16 1.48 16 30 H 0.08 1.72 7.44 -51.93 -0.39 1.33 16 31 H 0.12 2.45 7.41 -52.49 -0.39 2.06 16 32 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 33 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 34 H 0.12 1.64 8.06 -52.49 -0.42 1.21 16 35 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 36 H 0.14 2.71 7.36 -51.93 -0.38 2.33 16 37 H 0.13 2.24 7.78 -51.93 -0.40 1.84 16 38 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.17 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 354.55 15.07 5.34 5.34 Total: -1.00 -30.40 354.55 -7.24 -37.64 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -3.81 Total: 7.79 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -3.91 Total: 0.75 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 0.71 Total: -40.32 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: 0.17 Total: -25.15 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -4.23 Total: 15.52 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -1.51 Total: -1.57 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.40 -7.24 -37.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181892372.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.032 kcal (2) G-P(sol) polarization free energy of solvation -30.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds