Wall clock time and date at job start Wed Apr 1 2020 04:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99775 * 2 1 4 4 H 1.48503 * 109.47129 * 270.00195 * 3 2 1 5 5 H 1.48501 * 109.46819 * 29.99785 * 3 2 1 6 6 H 1.48497 * 109.47302 * 150.00013 * 3 2 1 7 7 C 1.37874 * 120.00743 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00569 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99276 * 0.02562 * 7 2 1 10 10 N 1.46508 * 109.46653 * 180.02562 * 9 7 2 11 11 C 1.46499 * 119.99508 * 264.77896 * 10 9 7 12 12 C 1.50703 * 109.46984 * 270.00027 * 11 10 9 13 13 C 1.38668 * 120.41890 * 269.71937 * 12 11 10 14 14 C 1.38630 * 118.42161 * 179.78041 * 13 12 11 15 15 C 1.38226 * 119.15996 * 0.52595 * 14 13 12 16 16 N 1.31856 * 120.76105 * 359.71412 * 15 14 13 17 17 C 1.31888 * 121.72655 * 0.02562 * 16 15 14 18 18 C 1.34771 * 120.00083 * 84.77957 * 10 9 7 19 19 O 1.21414 * 119.99857 * 174.62102 * 18 10 9 20 20 C 1.48927 * 120.00148 * 354.89381 * 18 10 9 21 21 N 1.31036 * 118.37239 * 353.08092 * 20 18 10 22 22 C 1.33871 * 122.59853 * 179.75313 * 21 20 18 23 23 O 1.21412 * 120.54170 * 180.26683 * 22 21 20 24 24 C 1.51339 * 118.91908 * 0.47833 * 22 21 20 25 25 C 1.51520 * 117.22584 * 359.78550 * 24 22 21 26 26 C 1.34411 * 117.51873 * 359.97438 * 25 24 22 27 27 Cl 1.73597 * 119.76048 * 179.97438 * 26 25 24 28 28 H 0.97004 * 120.00613 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.47321 * 60.00477 * 9 7 2 30 30 H 1.08997 * 109.46941 * 299.99828 * 9 7 2 31 31 H 1.09001 * 109.47735 * 30.00109 * 11 10 9 32 32 H 1.09007 * 109.47044 * 150.00184 * 11 10 9 33 33 H 1.08004 * 120.79202 * 0.02634 * 13 12 11 34 34 H 1.08003 * 120.42103 * 180.21897 * 14 13 12 35 35 H 1.07994 * 119.61848 * 179.74873 * 15 14 13 36 36 H 1.07999 * 119.61320 * 179.97438 * 17 16 15 37 37 H 1.08994 * 107.89774 * 237.82609 * 24 22 21 38 38 H 1.08997 * 107.86363 * 121.71816 * 24 22 21 39 39 H 1.08003 * 121.24143 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 7 2.2033 -3.6126 -0.0015 11 6 2.5925 -4.2437 -1.2650 12 6 1.6504 -5.3797 -1.5701 13 6 1.9284 -6.6621 -1.1217 14 6 1.0310 -7.6752 -1.4222 15 6 -0.0974 -7.3776 -2.1629 16 7 -0.3270 -6.1470 -2.5772 17 6 0.5019 -5.1578 -2.3056 18 6 2.7210 -4.0563 1.1610 19 8 3.4330 -5.0396 1.1724 20 6 2.4149 -3.3439 2.4326 21 7 1.7546 -2.2138 2.3698 22 6 1.4304 -1.5064 3.4591 23 8 0.8133 -0.4657 3.3579 24 6 1.8500 -2.0226 4.8185 25 6 2.6169 -3.3288 4.8576 26 6 2.8695 -3.9359 3.6853 27 17 3.7446 -5.4350 3.6624 28 1 -0.4851 0.8400 -0.0004 29 1 0.6249 -2.5563 -0.8920 30 1 0.6242 -2.5574 0.8880 31 1 2.5466 -3.5080 -2.0680 32 1 3.6093 -4.6274 -1.1814 33 1 2.8208 -6.8661 -0.5485 34 1 1.2138 -8.6851 -1.0860 35 1 -0.7993 -8.1619 -2.4047 36 1 0.2805 -4.1628 -2.6624 37 1 0.9511 -2.1437 5.4228 38 1 2.4666 -1.2579 5.2908 39 1 2.9475 -3.7565 5.7926 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184803882.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:53 Heat of formation + Delta-G solvation = 46.052393 kcal Electronic energy + Delta-G solvation = -28423.850471 eV Core-core repulsion = 24360.210553 eV Total energy + Delta-G solvation = -4063.639917 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.27396 -39.79713 -38.67360 -36.76045 -35.76948 -35.32001 -33.24770 -32.48026 -32.03141 -31.20367 -29.09834 -27.61960 -26.47388 -24.50706 -23.43962 -22.82275 -22.15276 -21.66663 -19.34380 -17.17617 -16.96610 -16.72992 -16.49484 -16.40236 -15.95125 -15.50110 -15.37815 -15.10359 -14.91769 -14.37540 -14.05729 -13.65292 -13.57214 -13.10339 -12.87962 -12.73427 -12.69163 -12.39378 -12.24808 -12.11122 -11.88242 -11.75852 -11.26250 -11.10171 -11.03965 -10.79816 -10.49306 -10.34716 -10.23964 -9.88934 -9.57545 -9.33096 -9.22742 -8.82639 -8.73237 -8.51962 -8.01495 -7.87763 -6.26095 -4.05310 0.17906 1.29369 1.53360 1.94030 2.36208 3.16050 3.23049 3.31062 3.31940 3.51557 4.00093 4.10350 4.13613 4.29135 4.59319 4.66663 4.72492 5.00815 5.06224 5.13725 5.19927 5.24485 5.31507 5.36063 5.38720 5.52145 5.64723 5.86589 5.92927 6.02410 6.08331 6.18866 6.36138 6.55395 6.63496 6.93421 7.27589 7.48889 7.66023 7.85067 8.01007 8.07776 8.19075 8.34091 8.70240 8.82137 9.31290 10.78866 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.008422 B = 0.005698 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3323.739754 B = 4912.417357 C = 7298.368226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.068 3.932 3 Si 0.894 3.106 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.275 1.275 7 C -0.449 4.449 8 H 0.059 0.941 9 C 0.233 3.767 10 N -0.566 5.566 11 C 0.160 3.840 12 C -0.147 4.147 13 C -0.052 4.052 14 C -0.182 4.182 15 C 0.090 3.910 16 N -0.490 5.490 17 C 0.115 3.885 18 C 0.552 3.448 19 O -0.541 6.541 20 C 0.187 3.813 21 N -0.439 5.439 22 C 0.483 3.517 23 O -0.420 6.420 24 C -0.177 4.177 25 C -0.101 4.101 26 C -0.074 4.074 27 Cl -0.039 7.039 28 H 0.269 0.731 29 H 0.033 0.967 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.140 0.860 34 H 0.129 0.871 35 H 0.149 0.851 36 H 0.158 0.842 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.093 -10.696 4.204 12.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.139 4.139 3 Si 0.722 3.278 4 H -0.205 1.205 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.488 4.488 8 H 0.077 0.923 9 C 0.113 3.887 10 N -0.296 5.296 11 C 0.037 3.963 12 C -0.151 4.151 13 C -0.079 4.079 14 C -0.202 4.202 15 C -0.067 4.067 16 N -0.199 5.199 17 C -0.042 4.042 18 C 0.338 3.662 19 O -0.419 6.419 20 C 0.013 3.987 21 N -0.165 5.165 22 C 0.268 3.732 23 O -0.291 6.291 24 C -0.219 4.219 25 C -0.126 4.126 26 C -0.104 4.104 27 Cl -0.010 7.010 28 H 0.079 0.921 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.113 0.887 32 H 0.105 0.895 33 H 0.158 0.842 34 H 0.147 0.853 35 H 0.166 0.834 36 H 0.175 0.825 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.856 -9.838 3.082 10.697 hybrid contribution 1.480 0.463 1.617 2.241 sum 4.336 -9.375 4.699 11.348 Atomic orbital electron populations 1.69864 1.06172 1.27766 1.44197 1.24854 0.94800 0.99124 0.95087 0.86544 0.79938 0.83363 0.77977 1.20529 1.20807 1.19984 1.21525 0.93310 0.90426 1.43572 0.92266 1.20043 0.87535 0.81834 0.99243 1.48290 1.43568 1.33730 1.03971 1.20252 0.96595 0.92397 0.87103 1.21372 0.98358 0.96056 0.99264 1.21683 0.99067 0.91973 0.95129 1.22108 0.96456 1.00384 1.01245 1.22696 0.95612 0.93959 0.94411 1.67706 1.30731 1.00477 1.20960 1.22805 0.89327 0.98151 0.93889 1.18091 0.81243 0.83626 0.83235 1.90733 1.39334 1.25769 1.86090 1.22729 0.93416 0.90349 0.92242 1.69769 1.11540 1.04298 1.30887 1.21612 0.79549 0.85903 0.86133 1.90721 1.30820 1.19931 1.87650 1.21828 1.02274 0.96386 1.01439 1.23967 0.96901 0.94756 0.96949 1.22250 1.01537 0.91912 0.94740 1.98381 1.73827 1.30084 1.98672 0.92143 0.94880 0.90761 0.88734 0.89466 0.84203 0.85283 0.83353 0.82527 0.86707 0.86587 0.83301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.62 13.29 55.43 0.74 -21.88 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.89 20.72 29.54 -169.99 -5.02 15.69 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.45 -10.99 7.38 -34.44 -0.25 -11.24 16 8 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 9 C 0.23 5.23 4.75 -5.19 -0.02 5.20 16 10 N -0.57 -10.98 2.45 -177.13 -0.43 -11.41 16 11 C 0.16 2.60 5.50 -5.19 -0.03 2.57 16 12 C -0.15 -2.29 5.48 -104.48 -0.57 -2.86 16 13 C -0.05 -0.75 9.74 -39.28 -0.38 -1.13 16 14 C -0.18 -2.31 10.11 -39.44 -0.40 -2.71 16 15 C 0.09 1.21 11.18 -17.55 -0.20 1.01 16 16 N -0.49 -7.81 10.36 -13.26 -0.14 -7.94 16 17 C 0.12 1.84 10.86 -17.55 -0.19 1.65 16 18 C 0.55 10.74 7.61 -11.83 -0.09 10.65 16 19 O -0.54 -10.33 12.85 5.44 0.07 -10.26 16 20 C 0.19 3.57 6.76 -80.74 -0.55 3.02 16 21 N -0.44 -9.30 4.57 -7.27 -0.03 -9.34 16 22 C 0.48 9.63 8.07 -11.08 -0.09 9.54 16 23 O -0.42 -9.86 17.98 5.44 0.10 -9.76 16 24 C -0.18 -2.44 6.02 -28.32 -0.17 -2.61 16 25 C -0.10 -1.28 10.32 -35.26 -0.36 -1.64 16 26 C -0.07 -1.16 6.42 -37.90 -0.24 -1.41 16 27 Cl -0.04 -0.58 25.95 -51.86 -1.35 -1.92 16 28 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.03 0.77 8.03 -51.93 -0.42 0.35 16 30 H 0.08 1.86 5.74 -51.93 -0.30 1.56 16 31 H 0.09 1.45 8.02 -51.93 -0.42 1.04 16 32 H 0.09 1.35 7.45 -51.93 -0.39 0.97 16 33 H 0.14 2.00 7.49 -52.48 -0.39 1.61 16 34 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 35 H 0.15 1.52 8.06 -52.49 -0.42 1.09 16 36 H 0.16 2.41 8.06 -52.49 -0.42 1.99 16 37 H 0.12 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.12 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.15 1.36 8.06 -52.48 -0.42 0.94 16 LS Contribution 355.34 15.07 5.35 5.35 Total: -1.00 -29.61 355.34 -8.35 -37.97 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -3.99 Total: 1.82 kcal Atomic # 6 Polarization: 15.34 SS G_CDS: -3.65 Total: 11.70 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: 0.13 Total: -50.58 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: 0.17 Total: -20.03 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.35 Total: -1.92 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.61 -8.35 -37.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184803882.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.019 kcal (2) G-P(sol) polarization free energy of solvation -29.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds