Wall clock time and date at job start Wed Apr 1 2020 04:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99775 * 2 1 4 4 H 1.48503 * 109.47129 * 270.00195 * 3 2 1 5 5 H 1.48501 * 109.46819 * 29.99785 * 3 2 1 6 6 H 1.48497 * 109.47302 * 150.00013 * 3 2 1 7 7 C 1.37874 * 120.00743 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00569 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99276 * 0.02562 * 7 2 1 10 10 N 1.46508 * 109.46653 * 180.02562 * 9 7 2 11 11 C 1.46499 * 119.99508 * 264.77896 * 10 9 7 12 12 C 1.50703 * 109.46984 * 270.00027 * 11 10 9 13 13 C 1.38668 * 120.41890 * 269.71937 * 12 11 10 14 14 C 1.38630 * 118.42161 * 179.78041 * 13 12 11 15 15 C 1.38226 * 119.15996 * 0.52595 * 14 13 12 16 16 N 1.31856 * 120.76105 * 359.71412 * 15 14 13 17 17 C 1.31888 * 121.72655 * 0.02562 * 16 15 14 18 18 C 1.34771 * 120.00083 * 84.77957 * 10 9 7 19 19 O 1.21414 * 119.99857 * 174.62102 * 18 10 9 20 20 C 1.48927 * 120.00148 * 354.89381 * 18 10 9 21 21 N 1.31036 * 118.37239 * 353.08092 * 20 18 10 22 22 C 1.33871 * 122.59853 * 179.75313 * 21 20 18 23 23 O 1.21412 * 120.54170 * 180.26683 * 22 21 20 24 24 C 1.51339 * 118.91908 * 0.47833 * 22 21 20 25 25 C 1.51520 * 117.22584 * 359.78550 * 24 22 21 26 26 C 1.34411 * 117.51873 * 359.97438 * 25 24 22 27 27 Cl 1.73597 * 119.76048 * 179.97438 * 26 25 24 28 28 H 0.97004 * 120.00613 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.47321 * 60.00477 * 9 7 2 30 30 H 1.08997 * 109.46941 * 299.99828 * 9 7 2 31 31 H 1.09001 * 109.47735 * 30.00109 * 11 10 9 32 32 H 1.09007 * 109.47044 * 150.00184 * 11 10 9 33 33 H 1.08004 * 120.79202 * 0.02634 * 13 12 11 34 34 H 1.08003 * 120.42103 * 180.21897 * 14 13 12 35 35 H 1.07994 * 119.61848 * 179.74873 * 15 14 13 36 36 H 1.07999 * 119.61320 * 179.97438 * 17 16 15 37 37 H 1.08994 * 107.89774 * 237.82609 * 24 22 21 38 38 H 1.08997 * 107.86363 * 121.71816 * 24 22 21 39 39 H 1.08003 * 121.24143 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 7 2.2033 -3.6126 -0.0015 11 6 2.5925 -4.2437 -1.2650 12 6 1.6504 -5.3797 -1.5701 13 6 1.9284 -6.6621 -1.1217 14 6 1.0310 -7.6752 -1.4222 15 6 -0.0974 -7.3776 -2.1629 16 7 -0.3270 -6.1470 -2.5772 17 6 0.5019 -5.1578 -2.3056 18 6 2.7210 -4.0563 1.1610 19 8 3.4330 -5.0396 1.1724 20 6 2.4149 -3.3439 2.4326 21 7 1.7546 -2.2138 2.3698 22 6 1.4304 -1.5064 3.4591 23 8 0.8133 -0.4657 3.3579 24 6 1.8500 -2.0226 4.8185 25 6 2.6169 -3.3288 4.8576 26 6 2.8695 -3.9359 3.6853 27 17 3.7446 -5.4350 3.6624 28 1 -0.4851 0.8400 -0.0004 29 1 0.6249 -2.5563 -0.8920 30 1 0.6242 -2.5574 0.8880 31 1 2.5466 -3.5080 -2.0680 32 1 3.6093 -4.6274 -1.1814 33 1 2.8208 -6.8661 -0.5485 34 1 1.2138 -8.6851 -1.0860 35 1 -0.7993 -8.1619 -2.4047 36 1 0.2805 -4.1628 -2.6624 37 1 0.9511 -2.1437 5.4228 38 1 2.4666 -1.2579 5.2908 39 1 2.9475 -3.7565 5.7926 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184803882.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:52 Heat of formation + Delta-G solvation = 27.339283 kcal Electronic energy + Delta-G solvation = -28424.661932 eV Core-core repulsion = 24360.210553 eV Total energy + Delta-G solvation = -4064.451379 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.74908 -41.08224 -40.19223 -38.16085 -37.22848 -36.80333 -34.74508 -33.97932 -33.30226 -32.43727 -30.51831 -29.25198 -27.86282 -25.92883 -24.86684 -24.25423 -23.48147 -22.99962 -20.85384 -18.73658 -18.48690 -18.19871 -17.85385 -17.65841 -17.20240 -16.95410 -16.86043 -16.58418 -16.39759 -16.04914 -15.40766 -15.00538 -14.81702 -14.39919 -14.31304 -14.15365 -13.99227 -13.86857 -13.65603 -13.36963 -13.30987 -13.13522 -12.82511 -12.75396 -12.53298 -12.28978 -12.15578 -11.95866 -11.84702 -11.64530 -10.86721 -10.70154 -10.43465 -10.40737 -9.99268 -9.92544 -9.50488 -9.44790 -8.04682 -6.02945 -1.16199 0.15601 0.39170 0.63640 1.14477 1.35892 1.39132 1.44505 1.61402 2.03385 2.45283 2.51675 2.72249 2.92048 3.14380 3.35378 3.39680 3.58002 3.64626 3.91759 3.92570 4.05351 4.14602 4.16326 4.27690 4.30864 4.50954 4.71440 4.77864 4.82772 4.87962 4.91504 4.96966 5.25117 5.41052 5.47096 5.74530 5.82694 5.86685 6.25162 6.30019 6.44185 6.83870 6.95422 7.05728 7.19550 7.56157 9.02987 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.008422 B = 0.005698 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3323.739754 B = 4912.417357 C = 7298.368226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.039 3.961 3 Si 0.929 3.071 4 H -0.271 1.271 5 H -0.295 1.295 6 H -0.279 1.279 7 C -0.482 4.482 8 H 0.042 0.958 9 C 0.263 3.737 10 N -0.566 5.566 11 C 0.160 3.840 12 C -0.156 4.156 13 C -0.058 4.058 14 C -0.170 4.170 15 C 0.088 3.912 16 N -0.515 5.515 17 C 0.099 3.901 18 C 0.539 3.461 19 O -0.531 6.531 20 C 0.244 3.756 21 N -0.494 5.494 22 C 0.475 3.525 23 O -0.469 6.469 24 C -0.179 4.179 25 C -0.013 4.013 26 C -0.133 4.133 27 Cl -0.028 7.028 28 H 0.256 0.744 29 H 0.010 0.990 30 H 0.047 0.953 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.144 0.856 34 H 0.167 0.833 35 H 0.183 0.817 36 H 0.146 0.854 37 H 0.159 0.841 38 H 0.157 0.843 39 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.850 -14.310 8.148 17.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.161 4.161 3 Si 0.757 3.243 4 H -0.197 1.197 5 H -0.222 1.222 6 H -0.204 1.204 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.142 3.858 10 N -0.296 5.296 11 C 0.038 3.962 12 C -0.159 4.159 13 C -0.084 4.084 14 C -0.189 4.189 15 C -0.069 4.069 16 N -0.224 5.224 17 C -0.057 4.057 18 C 0.325 3.675 19 O -0.408 6.408 20 C 0.066 3.934 21 N -0.219 5.219 22 C 0.263 3.737 23 O -0.344 6.344 24 C -0.219 4.219 25 C -0.037 4.037 26 C -0.164 4.164 27 Cl 0.001 6.999 28 H 0.065 0.935 29 H 0.028 0.972 30 H 0.064 0.936 31 H 0.111 0.889 32 H 0.115 0.885 33 H 0.162 0.838 34 H 0.184 0.816 35 H 0.200 0.800 36 H 0.164 0.836 37 H 0.176 0.824 38 H 0.174 0.826 39 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 4.638 -13.434 6.984 15.836 hybrid contribution 1.135 1.057 0.923 1.805 sum 5.773 -12.377 7.907 15.781 Atomic orbital electron populations 1.69957 1.06902 1.26703 1.50893 1.25186 0.95024 1.00660 0.95270 0.86022 0.78610 0.81722 0.77968 1.19697 1.22187 1.20396 1.21162 0.92029 0.91030 1.47954 0.93956 1.19412 0.87216 0.82225 0.96935 1.48304 1.42919 1.33110 1.05242 1.20345 0.97256 0.92747 0.85879 1.21225 0.98163 0.96400 1.00151 1.21811 0.99666 0.91787 0.95175 1.22474 0.95184 1.01545 0.99737 1.23326 0.96430 0.93629 0.93516 1.67705 1.31138 1.01570 1.21947 1.22721 0.89977 0.98181 0.94830 1.18431 0.81458 0.83972 0.83667 1.90732 1.38769 1.25219 1.86127 1.23324 0.87441 0.88784 0.93824 1.69726 1.12558 1.05706 1.33887 1.22403 0.77968 0.85048 0.88256 1.90716 1.33084 1.22039 1.88544 1.21903 1.04798 0.97750 0.97493 1.24754 0.89626 0.91512 0.97798 1.22175 1.05913 0.94156 0.94150 1.98389 1.73730 1.29204 1.98578 0.93498 0.97176 0.93599 0.88870 0.88501 0.83849 0.81583 0.79977 0.83637 0.82429 0.82591 0.77472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.26 13.29 21.45 0.28 -52.98 16 2 C 0.04 2.17 5.46 84.65 0.46 2.64 16 3 Si 0.93 45.49 29.54 68.60 2.03 47.52 16 4 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.30 -14.82 7.11 99.48 0.71 -14.12 16 6 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 7 C -0.48 -25.48 7.38 25.60 0.19 -25.29 16 8 H 0.04 2.27 7.81 -2.91 -0.02 2.25 16 9 C 0.26 12.71 4.75 85.63 0.41 13.12 16 10 N -0.57 -22.75 2.45 -832.67 -2.04 -24.79 16 11 C 0.16 5.41 5.50 85.63 0.47 5.88 16 12 C -0.16 -4.93 5.48 -19.78 -0.11 -5.04 16 13 C -0.06 -1.58 9.74 22.47 0.22 -1.36 16 14 C -0.17 -3.83 10.11 22.36 0.23 -3.60 16 15 C 0.09 2.17 11.18 84.69 0.95 3.12 16 16 N -0.51 -16.42 10.36 -195.85 -2.03 -18.44 16 17 C 0.10 3.32 10.86 84.67 0.92 4.23 16 18 C 0.54 20.64 7.61 87.11 0.66 21.31 16 19 O -0.53 -19.23 12.85 -3.45 -0.04 -19.27 16 20 C 0.24 8.87 6.76 44.10 0.30 9.17 16 21 N -0.49 -20.95 4.57 -295.77 -1.35 -22.30 16 22 C 0.47 18.28 8.07 88.00 0.71 18.99 16 23 O -0.47 -22.46 17.98 -3.44 -0.06 -22.52 16 24 C -0.18 -3.82 6.02 29.57 0.18 -3.64 16 25 C -0.01 -0.23 10.32 25.07 0.26 0.03 16 26 C -0.13 -3.54 6.42 23.36 0.15 -3.39 16 27 Cl -0.03 -0.71 25.95 -2.72 -0.07 -0.78 16 28 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 29 H 0.01 0.53 8.03 -2.39 -0.02 0.51 16 30 H 0.05 2.47 5.74 -2.39 -0.01 2.45 16 31 H 0.09 3.12 8.02 -2.39 -0.02 3.10 16 32 H 0.10 3.02 7.45 -2.38 -0.02 3.01 16 33 H 0.14 3.79 7.49 -2.91 -0.02 3.77 16 34 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 35 H 0.18 3.12 8.06 -2.91 -0.02 3.10 16 36 H 0.15 5.00 8.06 -2.91 -0.02 4.98 16 37 H 0.16 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.16 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.21 1.60 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -73.82 355.34 3.80 -70.02 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 1.10 Total: 7.39 kcal Atomic # 6 Polarization: 30.17 SS G_CDS: 5.99 Total: 36.16 kcal Atomic # 7 Polarization: -113.38 SS G_CDS: -5.14 Total: -118.52 kcal Atomic # 8 Polarization: -41.68 SS G_CDS: -0.11 Total: -41.79 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -0.07 Total: -0.78 kcal Total: -73.82 3.80 -70.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184803882.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.358 kcal (2) G-P(sol) polarization free energy of solvation -73.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds