Wall clock time and date at job start Wed Apr 1 2020 04:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99929 * 2 1 4 4 H 1.48500 * 109.47044 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47201 * 300.00246 * 3 2 1 6 6 H 1.48499 * 109.46993 * 60.00700 * 3 2 1 7 7 C 1.37883 * 119.99712 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99527 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00106 * 359.97438 * 7 2 1 10 10 N 1.46508 * 109.46883 * 180.02562 * 9 7 2 11 11 C 1.46499 * 119.99542 * 278.68939 * 10 9 7 12 12 C 1.50707 * 109.47221 * 270.00017 * 11 10 9 13 13 C 1.38675 * 120.41615 * 269.72582 * 12 11 10 14 14 C 1.38631 * 118.41500 * 179.78140 * 13 12 11 15 15 C 1.38226 * 119.16182 * 0.51067 * 14 13 12 16 16 N 1.31854 * 120.76341 * 359.72559 * 15 14 13 17 17 C 1.31884 * 121.72718 * 0.02562 * 16 15 14 18 18 C 1.34771 * 120.00372 * 98.68955 * 10 9 7 19 19 O 1.21589 * 120.00111 * 186.53270 * 18 10 9 20 20 C 1.47530 * 119.99849 * 6.53537 * 18 10 9 21 21 C 1.40272 * 120.50921 * 329.53179 * 20 18 10 22 22 C 1.37955 * 118.37523 * 179.97438 * 21 20 18 23 23 C 1.39173 * 119.29692 * 0.02562 * 22 21 20 24 24 O 1.35495 * 119.51169 * 180.27929 * 23 22 21 25 25 N 1.32392 * 120.97931 * 359.97438 * 23 22 21 26 26 C 1.31799 * 121.78034 * 0.02562 * 25 23 22 27 27 Cl 1.73600 * 119.70743 * 180.02562 * 26 25 23 28 28 H 0.97002 * 120.00286 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47392 * 60.00412 * 9 7 2 30 30 H 1.09004 * 109.47124 * 299.99354 * 9 7 2 31 31 H 1.08997 * 109.47318 * 29.99723 * 11 10 9 32 32 H 1.08999 * 109.47083 * 150.00104 * 11 10 9 33 33 H 1.07997 * 120.79192 * 0.02562 * 13 12 11 34 34 H 1.08001 * 120.41752 * 180.21979 * 14 13 12 35 35 H 1.08003 * 119.61875 * 179.74752 * 15 14 13 36 36 H 1.08002 * 119.61404 * 179.97438 * 17 16 15 37 37 H 1.08000 * 120.81325 * 0.02562 * 21 20 18 38 38 H 1.07991 * 120.35320 * 180.02562 * 22 21 20 39 39 H 0.96705 * 114.00071 * 269.72955 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.8247 -4.0448 -1.2547 12 6 1.9703 -5.1058 -1.8995 13 6 2.1803 -6.4463 -1.6132 14 6 1.3673 -7.3870 -2.2262 15 6 0.3883 -6.9614 -3.1042 16 7 0.2202 -5.6781 -3.3565 17 6 0.9717 -4.7554 -2.7880 18 6 2.5070 -4.2396 1.1532 19 8 3.3829 -5.0826 1.1746 20 6 1.7768 -3.9028 2.3901 21 6 1.2697 -2.6101 2.5882 22 6 0.5935 -2.3436 3.7608 23 6 0.4376 -3.3566 4.7023 24 8 -0.2308 -3.1013 5.8530 25 7 0.9273 -4.5678 4.4876 26 6 1.5798 -4.8668 3.3822 27 17 2.1989 -6.4728 3.1563 28 1 -0.4851 0.8400 0.0004 29 1 0.6240 -2.5568 -0.8903 30 1 0.6247 -2.5571 0.8898 31 1 2.9151 -3.1925 -1.9280 32 1 3.8147 -4.4515 -1.0484 33 1 2.9562 -6.7499 -0.9261 34 1 1.5002 -8.4396 -2.0238 35 1 -0.2467 -7.6882 -3.5890 36 1 0.8046 -3.7138 -3.0197 37 1 1.4045 -1.8424 1.8407 38 1 0.1895 -1.3595 3.9462 39 1 0.3328 -2.7890 6.5741 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190907931.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:39 Heat of formation + Delta-G solvation = 3.174893 kcal Electronic energy + Delta-G solvation = -28082.524390 eV Core-core repulsion = 24017.025164 eV Total energy + Delta-G solvation = -4065.499225 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.07153 -41.17115 -40.22917 -38.28019 -37.57684 -37.02462 -35.05900 -34.09853 -33.30282 -32.49439 -31.40017 -29.54296 -27.65185 -25.45082 -24.88985 -24.69169 -24.21130 -23.08404 -20.83521 -20.09571 -18.72901 -18.49885 -18.13236 -17.89125 -17.47696 -17.11752 -16.93572 -16.43328 -16.39998 -15.91970 -15.78311 -15.23213 -15.02587 -14.77414 -14.54733 -14.32028 -14.19591 -13.92844 -13.71098 -13.26795 -13.06784 -12.88070 -12.77230 -12.67775 -12.55497 -12.34287 -12.18207 -12.04193 -11.71576 -11.15821 -10.97567 -10.79923 -10.64322 -10.45375 -10.39048 -9.99484 -9.95236 -9.51100 -8.23179 -6.40188 -0.62059 -0.06603 0.12495 0.34141 0.59349 1.44326 1.51040 1.58820 1.67638 2.13764 2.36796 2.43550 2.63861 2.93943 3.05526 3.46308 3.55322 3.67013 3.75765 3.89506 3.92381 4.07147 4.11073 4.12660 4.20204 4.49060 4.68311 4.77707 4.79455 4.87097 4.91103 4.95338 5.19181 5.21466 5.30524 5.37477 5.62186 5.72451 5.78588 5.96527 6.30446 6.45664 6.60437 6.75771 7.02051 7.15777 7.33575 8.80512 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.006985 B = 0.006027 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4007.453061 B = 4644.321314 C = 7606.768892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.038 3.962 3 Si 0.950 3.050 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.550 4.550 8 H 0.063 0.937 9 C 0.223 3.777 10 N -0.582 5.582 11 C 0.164 3.836 12 C -0.156 4.156 13 C -0.065 4.065 14 C -0.170 4.170 15 C 0.089 3.911 16 N -0.512 5.512 17 C 0.102 3.898 18 C 0.561 3.439 19 O -0.554 6.554 20 C -0.197 4.197 21 C -0.033 4.033 22 C -0.188 4.188 23 C 0.351 3.649 24 O -0.476 6.476 25 N -0.527 5.527 26 C 0.233 3.767 27 Cl -0.005 7.005 28 H 0.272 0.728 29 H 0.020 0.980 30 H 0.053 0.947 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.137 0.863 34 H 0.164 0.836 35 H 0.184 0.816 36 H 0.151 0.849 37 H 0.203 0.797 38 H 0.172 0.828 39 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.121 -7.135 3.119 8.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.166 4.166 3 Si 0.776 3.224 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.588 4.588 8 H 0.081 0.919 9 C 0.103 3.897 10 N -0.311 5.311 11 C 0.041 3.959 12 C -0.159 4.159 13 C -0.091 4.091 14 C -0.190 4.190 15 C -0.068 4.068 16 N -0.220 5.220 17 C -0.054 4.054 18 C 0.349 3.651 19 O -0.434 6.434 20 C -0.204 4.204 21 C -0.057 4.057 22 C -0.208 4.208 23 C 0.173 3.827 24 O -0.287 6.287 25 N -0.250 5.250 26 C 0.067 3.933 27 Cl 0.024 6.976 28 H 0.081 0.919 29 H 0.038 0.962 30 H 0.070 0.930 31 H 0.115 0.885 32 H 0.109 0.891 33 H 0.155 0.845 34 H 0.182 0.818 35 H 0.201 0.799 36 H 0.168 0.832 37 H 0.219 0.781 38 H 0.189 0.811 39 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 1.178 -8.074 2.881 8.653 hybrid contribution 1.255 1.379 0.280 1.885 sum 2.433 -6.695 3.161 7.793 Atomic orbital electron populations 1.70012 1.07035 1.28606 1.48389 1.25554 0.95389 1.01848 0.93783 0.85614 0.79093 0.79770 0.77945 1.19468 1.20887 1.19974 1.21573 0.93839 0.90654 1.52746 0.91889 1.19995 0.88098 0.82871 0.98709 1.48018 1.44200 1.33047 1.05877 1.20216 0.95140 0.95858 0.84708 1.21284 0.99514 0.96032 0.99120 1.21779 0.98403 0.92334 0.96597 1.22456 0.96523 1.02007 0.98000 1.23316 0.96080 0.92397 0.94996 1.67713 1.26330 1.03057 1.24940 1.22750 0.90688 0.99301 0.92701 1.17863 0.82741 0.81178 0.83325 1.90706 1.32057 1.34598 1.86078 1.20657 1.06852 0.95663 0.97211 1.23639 0.88351 0.96733 0.96995 1.22405 1.02286 1.01782 0.94376 1.19231 0.88202 0.86327 0.88981 1.84692 1.35507 1.87301 1.21205 1.66441 1.12883 1.23129 1.22516 1.21333 0.93892 0.88660 0.89404 1.98406 1.84140 1.19254 1.95791 0.91856 0.96186 0.92961 0.88531 0.89062 0.84545 0.81825 0.79890 0.83182 0.78062 0.81062 0.70925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -43.76 13.29 21.45 0.28 -43.47 16 2 C 0.04 1.72 5.33 84.66 0.45 2.17 16 3 Si 0.95 37.08 29.54 68.60 2.03 39.11 16 4 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 5 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 6 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 7 C -0.55 -24.85 7.51 25.60 0.19 -24.66 16 8 H 0.06 2.90 7.81 -2.91 -0.02 2.88 16 9 C 0.22 9.61 4.65 85.63 0.40 10.01 16 10 N -0.58 -22.67 2.45 -834.27 -2.04 -24.71 16 11 C 0.16 5.55 5.61 85.64 0.48 6.03 16 12 C -0.16 -5.00 5.48 -19.77 -0.11 -5.11 16 13 C -0.06 -1.86 9.86 22.47 0.22 -1.64 16 14 C -0.17 -4.06 10.11 22.36 0.23 -3.83 16 15 C 0.09 2.24 11.18 84.69 0.95 3.19 16 16 N -0.51 -16.21 10.36 -195.84 -2.03 -18.24 16 17 C 0.10 3.36 10.86 84.67 0.92 4.28 16 18 C 0.56 22.31 7.26 86.69 0.63 22.93 16 19 O -0.55 -22.46 14.34 -4.00 -0.06 -22.52 16 20 C -0.20 -7.57 5.58 -19.97 -0.11 -7.68 16 21 C -0.03 -1.22 7.58 22.70 0.17 -1.05 16 22 C -0.19 -5.84 10.02 22.43 0.22 -5.61 16 23 C 0.35 10.60 7.74 84.83 0.66 11.25 16 24 O -0.48 -11.08 13.55 -87.96 -1.19 -12.28 16 25 N -0.53 -18.13 10.35 -298.65 -3.09 -21.23 16 26 C 0.23 8.51 7.30 85.06 0.62 9.13 16 27 Cl 0.00 -0.16 26.67 -2.72 -0.07 -0.23 16 28 H 0.27 12.56 8.31 -92.71 -0.77 11.79 16 29 H 0.02 0.93 8.13 -2.39 -0.02 0.91 16 30 H 0.05 2.36 4.03 -2.40 -0.01 2.35 16 31 H 0.10 3.19 8.02 -2.39 -0.02 3.17 16 32 H 0.09 3.01 7.29 -2.39 -0.02 2.99 16 33 H 0.14 3.93 8.04 -2.91 -0.02 3.91 16 34 H 0.16 2.74 8.06 -2.91 -0.02 2.71 16 35 H 0.18 3.22 8.06 -2.91 -0.02 3.20 16 36 H 0.15 4.97 8.06 -2.91 -0.02 4.95 16 37 H 0.20 8.33 3.23 -2.91 -0.01 8.32 16 38 H 0.17 4.54 8.06 -2.92 -0.02 4.51 16 39 H 0.43 4.96 9.06 -74.05 -0.67 4.29 16 Total: -1.00 -58.36 354.10 0.21 -58.15 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: 0.46 Total: 26.00 kcal Atomic # 6 Polarization: 13.50 SS G_CDS: 5.92 Total: 19.42 kcal Atomic # 7 Polarization: -100.77 SS G_CDS: -6.88 Total: -107.65 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -1.25 Total: -34.80 kcal Atomic # 14 Polarization: 37.08 SS G_CDS: 2.03 Total: 39.11 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -0.07 Total: -0.23 kcal Total: -58.36 0.21 -58.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190907931.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.324 kcal (2) G-P(sol) polarization free energy of solvation -58.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds