Wall clock time and date at job start Wed Apr 1 2020 04:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86810 * 119.99444 * 2 1 4 4 H 1.48493 * 109.47169 * 270.00308 * 3 2 1 5 5 H 1.48498 * 109.46885 * 30.00330 * 3 2 1 6 6 H 1.48501 * 109.46677 * 150.00053 * 3 2 1 7 7 C 1.37877 * 120.00605 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00200 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99750 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47289 * 180.02562 * 9 7 2 11 11 C 1.46497 * 120.00042 * 262.80187 * 10 9 7 12 12 C 1.50695 * 109.47309 * 269.99598 * 11 10 9 13 13 C 1.38243 * 119.98869 * 269.72885 * 12 11 10 14 14 C 1.38218 * 120.01159 * 179.72218 * 13 12 11 15 15 C 1.38349 * 119.98587 * 0.55118 * 14 13 12 16 16 Cl 1.73596 * 120.01262 * 179.70136 * 15 14 13 17 17 C 1.38350 * 119.97705 * 359.72310 * 15 14 13 18 18 C 1.38219 * 119.98537 * 359.97438 * 17 15 14 19 19 C 1.34779 * 119.99760 * 82.79915 * 10 9 7 20 20 O 1.21594 * 119.99687 * 183.14883 * 19 10 9 21 21 C 1.47506 * 119.99982 * 2.87207 * 19 10 9 22 22 N 1.32365 * 120.50787 * 353.58040 * 21 19 10 23 23 C 1.32164 * 120.59900 * 179.97438 * 22 21 19 24 24 C 1.36192 * 121.71975 * 0.02746 * 23 22 21 25 25 N 1.34889 * 121.00375 * 359.94870 * 24 23 22 26 26 H 0.97002 * 120.37517 * 180.02562 * 25 24 23 27 27 C 1.35158 * 119.26002 * 359.77579 * 25 24 23 28 28 O 1.21861 * 120.78561 * 180.23000 * 27 25 24 29 29 H 0.96993 * 120.00660 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47485 * 60.00583 * 9 7 2 31 31 H 1.09002 * 109.47550 * 300.00287 * 9 7 2 32 32 H 1.09002 * 109.47003 * 30.00153 * 11 10 9 33 33 H 1.09001 * 109.46799 * 149.99272 * 11 10 9 34 34 H 1.07994 * 119.99002 * 359.97438 * 13 12 11 35 35 H 1.07995 * 120.00634 * 180.26862 * 14 13 12 36 36 H 1.07996 * 120.00974 * 179.97438 * 17 15 14 37 37 H 1.07997 * 119.99284 * 179.97438 * 18 17 15 38 38 H 1.08002 * 119.14088 * 180.02562 * 23 22 21 39 39 H 1.08005 * 119.49836 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2513 -2.4991 -0.0005 10 7 2.2033 -3.6126 -0.0005 11 6 2.5585 -4.2726 -1.2592 12 6 1.6090 -5.4150 -1.5128 13 6 1.9073 -6.6794 -1.0399 14 6 1.0340 -7.7263 -1.2673 15 6 -0.1333 -7.5112 -1.9780 16 17 -1.2268 -8.8273 -2.2706 17 6 -0.4286 -6.2468 -2.4559 18 6 0.4425 -5.1993 -2.2226 19 6 2.7524 -4.0297 1.1575 20 8 3.5854 -4.9154 1.1510 21 6 2.3474 -3.4074 2.4321 22 7 1.5428 -2.3564 2.4409 23 6 1.1783 -1.7977 3.5819 24 6 1.6104 -2.2738 4.7825 25 7 2.4317 -3.3416 4.8516 26 1 2.7336 -3.6733 5.7117 27 6 2.8251 -3.9475 3.7093 28 8 3.5632 -4.9167 3.7395 29 1 -0.4851 0.8399 0.0004 30 1 0.6243 -2.5568 -0.8903 31 1 0.6249 -2.5571 0.8896 32 1 2.4908 -3.5554 -2.0773 33 1 3.5774 -4.6545 -1.1943 34 1 2.8209 -6.8481 -0.4893 35 1 1.2650 -8.7131 -0.8941 36 1 -1.3394 -6.0784 -3.0111 37 1 0.2123 -4.2124 -2.5959 38 1 0.5206 -0.9413 3.5616 39 1 1.2904 -1.7892 5.6931 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191507453.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:16 Heat of formation + Delta-G solvation = 17.493240 kcal Electronic energy + Delta-G solvation = -27986.137090 eV Core-core repulsion = 23921.258755 eV Total energy + Delta-G solvation = -4064.878335 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.16406 -39.47530 -38.35064 -37.25528 -36.40102 -34.97304 -34.56880 -32.64561 -31.19308 -30.84910 -29.76194 -27.32241 -26.28024 -24.90964 -23.51100 -22.98492 -22.42544 -21.42993 -19.91942 -18.01953 -17.98356 -16.97418 -16.66194 -16.36737 -15.56310 -15.45395 -15.38926 -15.10465 -14.90519 -14.39879 -14.27269 -14.06357 -13.57897 -13.30958 -13.22872 -13.01929 -12.61343 -12.33837 -12.22629 -11.79967 -11.68268 -11.42896 -11.29702 -11.12267 -11.06973 -10.93440 -10.86061 -10.64121 -10.31893 -10.15449 -9.70523 -9.32471 -8.82248 -8.65256 -8.46344 -8.13701 -7.90260 -7.61138 -6.07222 -4.05311 0.59952 1.29657 1.51742 2.12210 2.22599 2.74004 3.23944 3.29969 3.32012 3.37214 3.66316 4.06826 4.28079 4.39304 4.48676 4.72127 4.92001 4.98282 5.06699 5.19873 5.29275 5.42047 5.46853 5.59245 5.61629 5.87043 5.89620 6.19100 6.22388 6.29531 6.41247 6.45007 6.53746 6.69087 6.78763 6.87083 7.02792 7.49363 7.73361 7.85631 8.00365 8.17811 8.24377 8.32992 8.91500 9.05342 9.53351 10.99921 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.009624 B = 0.004042 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2908.699750 B = 6926.415967 C = 8673.624098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.070 3.930 3 Si 0.884 3.116 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.495 4.495 8 H 0.053 0.947 9 C 0.229 3.771 10 N -0.574 5.574 11 C 0.154 3.846 12 C -0.089 4.089 13 C -0.086 4.086 14 C -0.118 4.118 15 C -0.037 4.037 16 Cl -0.085 7.085 17 C -0.116 4.116 18 C -0.087 4.087 19 C 0.581 3.419 20 O -0.545 6.545 21 C -0.002 4.002 22 N -0.286 5.286 23 C -0.045 4.045 24 C 0.094 3.906 25 N -0.597 5.597 26 H 0.415 0.585 27 C 0.494 3.506 28 O -0.503 6.503 29 H 0.261 0.739 30 H 0.027 0.973 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.138 0.862 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.136 0.864 38 H 0.175 0.825 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.312 -6.771 3.970 8.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.132 4.132 3 Si 0.713 3.287 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.535 4.535 8 H 0.071 0.929 9 C 0.110 3.890 10 N -0.304 5.304 11 C 0.031 3.969 12 C -0.090 4.090 13 C -0.105 4.105 14 C -0.137 4.137 15 C -0.064 4.064 16 Cl -0.057 7.057 17 C -0.135 4.135 18 C -0.106 4.106 19 C 0.368 3.632 20 O -0.422 6.422 21 C -0.169 4.169 22 N -0.004 5.004 23 C -0.188 4.188 24 C -0.039 4.039 25 N -0.232 5.232 26 H 0.254 0.746 27 C 0.287 3.713 28 O -0.376 6.376 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.156 0.844 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.154 0.846 38 H 0.192 0.808 39 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -2.040 -7.384 3.168 8.290 hybrid contribution 0.487 0.846 1.346 1.663 sum -1.553 -6.538 4.515 8.096 Atomic orbital electron populations 1.69923 1.05700 1.26592 1.50340 1.24757 0.94642 0.98372 0.95446 0.86724 0.79936 0.83891 0.78193 1.20778 1.21256 1.20178 1.21333 0.92985 0.90444 1.48705 0.92868 1.20094 0.87706 0.81681 0.99520 1.48156 1.44418 1.33766 1.04045 1.20294 0.96977 0.92061 0.87553 1.20556 0.96401 0.95359 0.96730 1.21241 0.99696 0.91694 0.97824 1.21011 0.93201 1.00110 0.99336 1.20908 0.93203 0.89203 1.03059 1.98342 1.63765 1.48457 1.95114 1.21002 1.00474 0.90960 1.01045 1.21169 0.93005 0.98875 0.97548 1.17075 0.81602 0.82045 0.82518 1.90755 1.33265 1.31695 1.86504 1.23885 1.02504 0.97400 0.93063 1.68874 1.01981 1.02070 1.27426 1.22354 1.06263 1.04325 0.85886 1.23110 0.90593 0.88009 1.02149 1.43579 1.41125 1.26868 1.11605 0.74645 1.19266 0.82746 0.84794 0.84531 1.90983 1.35382 1.25630 1.85632 0.92957 0.95497 0.90267 0.89003 0.89549 0.84447 0.85388 0.85207 0.84579 0.80811 0.81537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.74 13.29 55.43 0.74 -22.00 16 2 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.88 19.76 29.54 -169.99 -5.02 14.74 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.49 -12.23 7.98 -34.44 -0.27 -12.51 16 8 H 0.05 1.39 7.81 -52.49 -0.41 0.98 16 9 C 0.23 5.22 4.77 -5.19 -0.02 5.20 16 10 N -0.57 -12.01 2.46 -177.68 -0.44 -12.45 16 11 C 0.15 2.75 5.52 -5.20 -0.03 2.72 16 12 C -0.09 -1.45 5.46 -104.62 -0.57 -2.02 16 13 C -0.09 -1.36 9.70 -39.59 -0.38 -1.74 16 14 C -0.12 -1.69 9.83 -39.55 -0.39 -2.08 16 15 C -0.04 -0.52 6.32 -39.50 -0.25 -0.77 16 16 Cl -0.09 -1.07 28.96 -51.86 -1.50 -2.57 16 17 C -0.12 -1.62 9.83 -39.55 -0.39 -2.01 16 18 C -0.09 -1.32 9.70 -39.59 -0.38 -1.70 16 19 C 0.58 12.91 7.58 -12.48 -0.09 12.81 16 20 O -0.54 -12.93 14.79 -15.04 -0.22 -13.16 16 21 C 0.00 -0.03 6.81 -80.46 -0.55 -0.58 16 22 N -0.29 -5.60 5.17 -8.58 -0.04 -5.65 16 23 C -0.04 -0.67 11.04 -18.14 -0.20 -0.87 16 24 C 0.09 0.99 11.15 -16.94 -0.19 0.80 16 25 N -0.60 -7.39 5.30 -13.20 -0.07 -7.46 16 26 H 0.41 3.64 8.93 -40.82 -0.36 3.28 16 27 C 0.49 9.12 7.92 -12.68 -0.10 9.02 16 28 O -0.50 -10.93 16.42 -15.28 -0.25 -11.18 16 29 H 0.26 6.44 8.31 -40.82 -0.34 6.10 16 30 H 0.03 0.64 8.02 -51.93 -0.42 0.22 16 31 H 0.08 1.90 5.28 -51.96 -0.27 1.63 16 32 H 0.09 1.54 8.02 -51.93 -0.42 1.12 16 33 H 0.09 1.53 7.32 -51.93 -0.38 1.15 16 34 H 0.14 2.26 7.75 -52.49 -0.41 1.86 16 35 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 36 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.14 1.97 8.06 -52.49 -0.42 1.55 16 38 H 0.17 2.35 8.06 -52.49 -0.42 1.92 16 39 H 0.17 0.85 8.06 -52.48 -0.42 0.43 16 LS Contribution 358.05 15.07 5.40 5.40 Total: -1.00 -32.38 358.05 -9.26 -41.63 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -3.92 Total: 4.79 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: -3.92 Total: 7.91 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: 0.18 Total: -47.56 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.47 Total: -24.34 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.50 Total: -2.57 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.38 -9.26 -41.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191507453.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.127 kcal (2) G-P(sol) polarization free energy of solvation -32.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds