Wall clock time and date at job start Wed Apr 1 2020 04:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86810 * 119.99444 * 2 1 4 4 H 1.48493 * 109.47169 * 270.00308 * 3 2 1 5 5 H 1.48498 * 109.46885 * 30.00330 * 3 2 1 6 6 H 1.48501 * 109.46677 * 150.00053 * 3 2 1 7 7 C 1.37877 * 120.00605 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00200 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99750 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47289 * 180.02562 * 9 7 2 11 11 C 1.46497 * 120.00042 * 262.80187 * 10 9 7 12 12 C 1.50695 * 109.47309 * 269.99598 * 11 10 9 13 13 C 1.38243 * 119.98869 * 269.72885 * 12 11 10 14 14 C 1.38218 * 120.01159 * 179.72218 * 13 12 11 15 15 C 1.38349 * 119.98587 * 0.55118 * 14 13 12 16 16 Cl 1.73596 * 120.01262 * 179.70136 * 15 14 13 17 17 C 1.38350 * 119.97705 * 359.72310 * 15 14 13 18 18 C 1.38219 * 119.98537 * 359.97438 * 17 15 14 19 19 C 1.34779 * 119.99760 * 82.79915 * 10 9 7 20 20 O 1.21594 * 119.99687 * 183.14883 * 19 10 9 21 21 C 1.47506 * 119.99982 * 2.87207 * 19 10 9 22 22 N 1.32365 * 120.50787 * 353.58040 * 21 19 10 23 23 C 1.32164 * 120.59900 * 179.97438 * 22 21 19 24 24 C 1.36192 * 121.71975 * 0.02746 * 23 22 21 25 25 N 1.34889 * 121.00375 * 359.94870 * 24 23 22 26 26 H 0.97002 * 120.37517 * 180.02562 * 25 24 23 27 27 C 1.35158 * 119.26002 * 359.77579 * 25 24 23 28 28 O 1.21861 * 120.78561 * 180.23000 * 27 25 24 29 29 H 0.96993 * 120.00660 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47485 * 60.00583 * 9 7 2 31 31 H 1.09002 * 109.47550 * 300.00287 * 9 7 2 32 32 H 1.09002 * 109.47003 * 30.00153 * 11 10 9 33 33 H 1.09001 * 109.46799 * 149.99272 * 11 10 9 34 34 H 1.07994 * 119.99002 * 359.97438 * 13 12 11 35 35 H 1.07995 * 120.00634 * 180.26862 * 14 13 12 36 36 H 1.07996 * 120.00974 * 179.97438 * 17 15 14 37 37 H 1.07997 * 119.99284 * 179.97438 * 18 17 15 38 38 H 1.08002 * 119.14088 * 180.02562 * 23 22 21 39 39 H 1.08005 * 119.49836 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2513 -2.4991 -0.0005 10 7 2.2033 -3.6126 -0.0005 11 6 2.5585 -4.2726 -1.2592 12 6 1.6090 -5.4150 -1.5128 13 6 1.9073 -6.6794 -1.0399 14 6 1.0340 -7.7263 -1.2673 15 6 -0.1333 -7.5112 -1.9780 16 17 -1.2268 -8.8273 -2.2706 17 6 -0.4286 -6.2468 -2.4559 18 6 0.4425 -5.1993 -2.2226 19 6 2.7524 -4.0297 1.1575 20 8 3.5854 -4.9154 1.1510 21 6 2.3474 -3.4074 2.4321 22 7 1.5428 -2.3564 2.4409 23 6 1.1783 -1.7977 3.5819 24 6 1.6104 -2.2738 4.7825 25 7 2.4317 -3.3416 4.8516 26 1 2.7336 -3.6733 5.7117 27 6 2.8251 -3.9475 3.7093 28 8 3.5632 -4.9167 3.7395 29 1 -0.4851 0.8399 0.0004 30 1 0.6243 -2.5568 -0.8903 31 1 0.6249 -2.5571 0.8896 32 1 2.4908 -3.5554 -2.0773 33 1 3.5774 -4.6545 -1.1943 34 1 2.8209 -6.8481 -0.4893 35 1 1.2650 -8.7131 -0.8941 36 1 -1.3394 -6.0784 -3.0111 37 1 0.2123 -4.2124 -2.5959 38 1 0.5206 -0.9413 3.5616 39 1 1.2904 -1.7892 5.6931 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191507453.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:15 Heat of formation + Delta-G solvation = -1.730647 kcal Electronic energy + Delta-G solvation = -27986.970700 eV Core-core repulsion = 23921.258755 eV Total energy + Delta-G solvation = -4065.711945 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.48692 -40.83203 -39.76136 -38.67121 -37.51549 -36.58317 -35.90863 -34.45109 -32.57776 -32.03365 -31.03219 -29.07285 -27.65063 -26.30272 -24.92035 -24.59707 -23.70756 -22.69776 -21.28252 -19.41785 -19.27235 -18.51902 -18.05476 -17.87260 -17.02350 -16.93370 -16.78386 -16.39939 -16.33553 -16.04908 -15.62002 -15.38069 -14.89309 -14.48690 -14.44154 -14.30126 -14.20498 -13.95604 -13.71692 -13.40652 -13.10621 -12.78058 -12.71047 -12.67995 -12.43050 -12.37200 -12.29319 -12.02660 -11.85793 -11.73475 -11.54957 -10.98568 -10.43307 -10.00572 -9.83177 -9.52334 -9.40020 -9.04157 -7.96891 -6.01968 -0.61316 0.08578 0.32964 0.77992 1.10896 1.45518 1.50131 1.53211 1.57249 1.83466 2.31809 2.54687 2.77939 2.88570 3.32626 3.35813 3.43205 3.78014 3.87828 3.94988 3.96391 4.09870 4.30046 4.30191 4.38593 4.60937 4.68610 4.80596 4.99798 5.05628 5.11851 5.22970 5.23713 5.38677 5.54640 5.61337 5.63927 5.81697 5.96606 6.02175 6.36800 6.60726 6.71897 6.90001 7.05399 7.41527 7.61764 9.09685 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.009624 B = 0.004042 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2908.699750 B = 6926.415967 C = 8673.624098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.042 3.958 3 Si 0.935 3.065 4 H -0.284 1.284 5 H -0.276 1.276 6 H -0.284 1.284 7 C -0.502 4.502 8 H 0.030 0.970 9 C 0.248 3.752 10 N -0.578 5.578 11 C 0.153 3.847 12 C -0.100 4.100 13 C -0.096 4.096 14 C -0.116 4.116 15 C -0.039 4.039 16 Cl -0.066 7.066 17 C -0.111 4.111 18 C -0.092 4.092 19 C 0.572 3.428 20 O -0.576 6.576 21 C -0.070 4.070 22 N -0.302 5.302 23 C -0.087 4.087 24 C 0.174 3.826 25 N -0.568 5.568 26 H 0.440 0.560 27 C 0.490 3.510 28 O -0.548 6.548 29 H 0.263 0.737 30 H 0.012 0.988 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.123 0.877 35 H 0.146 0.854 36 H 0.153 0.847 37 H 0.139 0.861 38 H 0.190 0.810 39 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.873 -5.887 6.472 9.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.158 4.158 3 Si 0.762 3.238 4 H -0.210 1.210 5 H -0.201 1.201 6 H -0.210 1.210 7 C -0.541 4.541 8 H 0.049 0.951 9 C 0.128 3.872 10 N -0.307 5.307 11 C 0.030 3.970 12 C -0.102 4.102 13 C -0.115 4.115 14 C -0.135 4.135 15 C -0.065 4.065 16 Cl -0.038 7.038 17 C -0.130 4.130 18 C -0.111 4.111 19 C 0.360 3.640 20 O -0.457 6.457 21 C -0.231 4.231 22 N -0.020 5.020 23 C -0.234 4.234 24 C 0.038 3.962 25 N -0.202 5.202 26 H 0.283 0.717 27 C 0.285 3.715 28 O -0.426 6.426 29 H 0.072 0.928 30 H 0.030 0.970 31 H 0.089 0.911 32 H 0.113 0.887 33 H 0.097 0.903 34 H 0.141 0.859 35 H 0.164 0.836 36 H 0.171 0.829 37 H 0.157 0.843 38 H 0.207 0.793 39 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -3.586 -6.525 5.646 9.344 hybrid contribution 0.870 0.628 0.845 1.366 sum -2.716 -5.897 6.491 9.181 Atomic orbital electron populations 1.69989 1.06421 1.27155 1.51271 1.25178 0.95188 1.00310 0.95163 0.85948 0.78643 0.81332 0.77840 1.21046 1.20138 1.20994 1.21273 0.91826 0.91645 1.49387 0.95121 1.19730 0.87547 0.81614 0.98296 1.48148 1.44103 1.33580 1.04865 1.20347 0.97193 0.92712 0.86712 1.20416 0.96847 0.94916 0.97998 1.21158 0.99841 0.92185 0.98326 1.21165 0.92963 1.00365 0.98979 1.21001 0.93263 0.89842 1.02433 1.98348 1.62980 1.47480 1.94946 1.21230 1.00774 0.90474 1.00514 1.21221 0.92798 0.99546 0.97540 1.17531 0.81109 0.81778 0.83574 1.90700 1.34666 1.33177 1.87164 1.23434 1.06716 0.99890 0.93085 1.68559 1.01101 1.01490 1.30809 1.22787 1.08440 1.05836 0.86300 1.24138 0.84393 0.84070 1.03585 1.43511 1.39338 1.26059 1.11278 0.71654 1.19034 0.82443 0.84512 0.85493 1.90949 1.37597 1.27672 1.86409 0.92801 0.97017 0.91076 0.88652 0.90343 0.85877 0.83628 0.82930 0.84344 0.79275 0.73512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.70 13.29 21.45 0.28 -46.42 16 2 C 0.04 2.09 5.46 84.65 0.46 2.55 16 3 Si 0.93 40.61 29.54 68.60 2.03 42.63 16 4 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.28 -11.45 7.11 99.48 0.71 -10.75 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.50 -25.67 7.98 25.60 0.20 -25.46 16 8 H 0.03 1.67 7.81 -2.91 -0.02 1.65 16 9 C 0.25 11.86 4.77 85.63 0.41 12.27 16 10 N -0.58 -25.88 2.46 -834.31 -2.05 -27.94 16 11 C 0.15 5.91 5.52 85.63 0.47 6.39 16 12 C -0.10 -3.48 5.46 -19.86 -0.11 -3.59 16 13 C -0.10 -3.22 9.70 22.27 0.22 -3.01 16 14 C -0.12 -3.35 9.83 22.29 0.22 -3.13 16 15 C -0.04 -1.05 6.32 22.32 0.14 -0.91 16 16 Cl -0.07 -1.56 28.96 -2.72 -0.08 -1.64 16 17 C -0.11 -3.04 9.83 22.29 0.22 -2.82 16 18 C -0.09 -2.86 9.70 22.27 0.22 -2.65 16 19 C 0.57 27.14 7.58 86.69 0.66 27.80 16 20 O -0.58 -29.54 14.79 15.42 0.23 -29.31 16 21 C -0.07 -2.96 6.81 43.71 0.30 -2.66 16 22 N -0.30 -11.85 5.17 -181.06 -0.94 -12.78 16 23 C -0.09 -2.32 11.04 84.17 0.93 -1.39 16 24 C 0.17 2.64 11.15 83.75 0.93 3.57 16 25 N -0.57 -11.78 5.30 -313.60 -1.66 -13.44 16 26 H 0.44 5.48 8.93 -92.71 -0.83 4.65 16 27 C 0.49 17.95 7.92 86.38 0.68 18.63 16 28 O -0.55 -24.42 16.42 14.57 0.24 -24.18 16 29 H 0.26 12.86 8.31 -92.71 -0.77 12.09 16 30 H 0.01 0.59 8.02 -2.39 -0.02 0.57 16 31 H 0.07 3.55 5.28 -2.46 -0.01 3.54 16 32 H 0.10 3.48 8.02 -2.39 -0.02 3.47 16 33 H 0.08 3.09 7.32 -2.39 -0.02 3.07 16 34 H 0.12 4.44 7.75 -2.91 -0.02 4.42 16 35 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 36 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 37 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 38 H 0.19 4.45 8.06 -2.91 -0.02 4.43 16 39 H 0.25 0.04 8.06 -2.91 -0.02 0.01 16 Total: -1.00 -77.12 358.05 4.29 -72.82 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.29 Total: 14.65 kcal Atomic # 6 Polarization: 19.65 SS G_CDS: 5.95 Total: 25.60 kcal Atomic # 7 Polarization: -96.21 SS G_CDS: -4.37 Total: -100.58 kcal Atomic # 8 Polarization: -53.96 SS G_CDS: 0.47 Total: -53.49 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.63 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.08 Total: -1.64 kcal Total: -77.12 4.29 -72.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191507453.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.093 kcal (2) G-P(sol) polarization free energy of solvation -77.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds