Wall clock time and date at job start Wed Apr 1 2020 04:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00121 * 2 1 4 4 H 1.48500 * 109.47164 * 270.00287 * 3 2 1 5 5 H 1.48494 * 109.47320 * 30.00432 * 3 2 1 6 6 H 1.48504 * 109.46755 * 150.00302 * 3 2 1 7 7 C 1.37872 * 119.99691 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00204 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99917 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.46506 * 119.99990 * 277.25427 * 10 9 7 12 12 C 1.50694 * 109.46894 * 270.00107 * 11 10 9 13 13 C 1.38243 * 119.98830 * 269.72291 * 12 11 10 14 14 C 1.38210 * 120.01534 * 179.72757 * 13 12 11 15 15 C 1.38355 * 119.98618 * 0.55043 * 14 13 12 16 16 Cl 1.73599 * 120.01536 * 179.70281 * 15 14 13 17 17 C 1.38350 * 119.96939 * 359.72840 * 15 14 13 18 18 C 1.38208 * 119.98973 * 359.97438 * 17 15 14 19 19 C 1.34780 * 120.00225 * 97.25580 * 10 9 7 20 20 O 1.21511 * 119.99938 * 184.15906 * 19 10 9 21 21 C 1.48148 * 119.99917 * 4.15074 * 19 10 9 22 22 C 1.39892 * 121.11931 * 318.80560 * 21 19 10 23 23 N 1.31774 * 119.78198 * 179.97438 * 22 21 19 24 24 N 1.28269 * 122.42287 * 359.97438 * 23 22 21 25 25 C 1.32283 * 122.43275 * 359.72335 * 24 23 22 26 26 O 1.35705 * 120.07926 * 180.29783 * 25 24 23 27 27 C 1.39230 * 119.83921 * 0.53715 * 25 24 23 28 28 H 0.97000 * 119.99611 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47037 * 60.00568 * 9 7 2 30 30 H 1.08997 * 109.47222 * 300.00222 * 9 7 2 31 31 H 1.09001 * 109.46794 * 30.00251 * 11 10 9 32 32 H 1.09002 * 109.47239 * 150.00241 * 11 10 9 33 33 H 1.08003 * 119.99042 * 0.02562 * 13 12 11 34 34 H 1.08008 * 120.00795 * 180.27429 * 14 13 12 35 35 H 1.08002 * 120.00483 * 179.97438 * 17 15 14 36 36 H 1.08004 * 119.99411 * 179.97438 * 18 17 15 37 37 H 1.07998 * 120.11406 * 359.95803 * 22 21 19 38 38 H 0.96698 * 113.99579 * 270.23809 * 26 25 24 39 39 H 1.08001 * 121.12013 * 179.75393 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2508 -2.4992 -0.0005 10 7 2.2028 -3.6127 -0.0005 11 6 2.8006 -4.0654 -1.2592 12 6 1.9342 -5.1364 -1.8701 13 6 2.1570 -6.4653 -1.5608 14 6 1.3591 -7.4476 -2.1163 15 6 0.3446 -7.1017 -2.9911 16 17 -0.6531 -8.3355 -3.6954 17 6 0.1258 -5.7721 -3.3048 18 6 0.9204 -4.7902 -2.7438 19 6 2.5287 -4.2208 1.1573 20 8 3.3741 -5.0935 1.1683 21 6 1.8562 -3.8250 2.4167 22 6 1.5986 -2.4811 2.7073 23 7 0.9984 -2.1587 3.8352 24 7 0.6322 -3.0374 4.6949 25 6 0.8249 -4.3332 4.5111 26 8 0.4126 -5.2220 5.4500 27 6 1.4561 -4.7824 3.3543 28 1 -0.4849 0.8401 0.0004 29 1 0.6239 -2.5567 -0.8904 30 1 0.6245 -2.5571 0.8896 31 1 2.8782 -3.2240 -1.9478 32 1 3.7944 -4.4689 -1.0650 33 1 2.9516 -6.7355 -0.8810 34 1 1.5304 -8.4854 -1.8711 35 1 -0.6657 -5.5014 -3.9879 36 1 0.7500 -3.7522 -2.9889 37 1 1.8909 -1.7102 2.0097 38 1 1.0766 -5.4170 6.1253 39 1 1.6275 -5.8352 3.1849 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191568874.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:05 Heat of formation + Delta-G solvation = 10.829853 kcal Electronic energy + Delta-G solvation = -27613.112127 eV Core-core repulsion = 23547.944846 eV Total energy + Delta-G solvation = -4065.167281 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.05337 -39.73389 -38.75418 -37.40968 -36.55725 -35.48933 -33.34883 -32.82707 -31.40318 -31.02156 -30.83016 -27.76977 -26.59536 -24.48681 -24.09334 -23.25512 -22.64090 -21.53361 -19.85086 -18.32822 -17.79798 -17.25287 -16.68021 -16.53125 -16.31133 -15.70039 -15.48202 -15.30861 -15.10457 -14.58615 -14.47546 -13.77818 -13.50274 -13.47742 -13.26608 -13.12471 -13.07198 -12.58252 -12.15667 -11.97342 -11.73872 -11.56457 -11.47193 -11.26135 -11.09331 -10.99273 -10.79155 -10.67251 -10.45324 -10.09503 -10.01018 -9.88206 -9.35868 -9.10083 -8.99142 -8.77565 -8.57270 -8.13691 -6.42935 -4.56072 0.68724 1.07762 1.12128 1.34839 2.09535 2.90851 3.12544 3.21833 3.22988 3.32631 3.56338 3.78957 3.90250 4.14763 4.58256 4.69903 4.80748 4.84810 4.91392 4.93292 4.98597 5.03399 5.30847 5.42393 5.49249 5.66127 5.71687 5.84900 6.02628 6.03726 6.09139 6.25002 6.26514 6.35335 6.61612 6.65370 6.84926 6.88596 7.12462 7.35846 7.49475 7.71670 7.88772 8.39646 8.58829 8.96251 9.14545 10.62067 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.008107 B = 0.004145 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3452.941297 B = 6753.050542 C = 9061.414560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.076 3.924 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.562 4.562 8 H 0.070 0.930 9 C 0.224 3.776 10 N -0.576 5.576 11 C 0.156 3.844 12 C -0.093 4.093 13 C -0.088 4.088 14 C -0.118 4.118 15 C -0.035 4.035 16 Cl -0.082 7.082 17 C -0.115 4.115 18 C -0.086 4.086 19 C 0.563 3.437 20 O -0.553 6.553 21 C -0.107 4.107 22 C 0.074 3.926 23 N -0.221 5.221 24 N -0.253 5.253 25 C 0.235 3.765 26 O -0.475 6.475 27 C -0.093 4.093 28 H 0.272 0.728 29 H 0.042 0.958 30 H 0.043 0.957 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.136 0.864 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.138 0.862 37 H 0.225 0.775 38 H 0.400 0.600 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.636 -11.160 -2.467 11.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.131 4.131 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.599 4.599 8 H 0.088 0.912 9 C 0.104 3.896 10 N -0.304 5.304 11 C 0.033 3.967 12 C -0.095 4.095 13 C -0.107 4.107 14 C -0.136 4.136 15 C -0.062 4.062 16 Cl -0.053 7.053 17 C -0.134 4.134 18 C -0.105 4.105 19 C 0.349 3.651 20 O -0.433 6.433 21 C -0.121 4.121 22 C -0.090 4.090 23 N -0.065 5.065 24 N -0.105 5.105 25 C 0.048 3.952 26 O -0.279 6.279 27 C -0.124 4.124 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.117 0.883 32 H 0.107 0.893 33 H 0.154 0.846 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.155 0.845 37 H 0.241 0.759 38 H 0.257 0.743 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.671 -10.464 -1.841 10.755 hybrid contribution 0.949 -0.418 -0.721 1.263 sum 2.620 -10.882 -2.562 11.483 Atomic orbital electron populations 1.69910 1.06157 1.28204 1.46357 1.24994 0.94882 0.99591 0.93677 0.86470 0.80050 0.82519 0.78492 1.20285 1.20645 1.19343 1.21412 0.94032 0.90011 1.54482 0.91202 1.19873 0.87720 0.82450 0.99513 1.48137 1.44306 1.33450 1.04527 1.20311 0.95298 0.95482 0.85579 1.20497 0.97302 0.94963 0.96718 1.21197 0.99163 0.91901 0.98399 1.21017 0.95050 1.00318 0.97259 1.20937 0.95789 0.89694 0.99753 1.98352 1.69171 1.54470 1.83312 1.21038 1.00561 0.90667 1.01095 1.21195 0.93835 0.99777 0.95664 1.17910 0.82273 0.81628 0.83256 1.90697 1.33305 1.32809 1.86503 1.21256 0.99520 0.94962 0.96362 1.26423 0.90282 0.97092 0.95161 1.73176 1.08021 1.24895 1.00359 1.72737 1.13189 0.99763 1.24787 1.20670 0.95453 0.88870 0.90179 1.84813 1.43744 1.58890 1.40485 1.22540 0.94693 1.01947 0.93224 0.91828 0.93961 0.93903 0.88334 0.89287 0.84591 0.85274 0.85069 0.84450 0.75922 0.74318 0.82732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.84 13.29 55.43 0.74 -21.10 16 2 C 0.08 1.78 5.45 -17.82 -0.10 1.68 16 3 Si 0.90 18.70 29.54 -169.99 -5.02 13.68 16 4 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.56 -12.56 6.91 -34.44 -0.24 -12.80 16 8 H 0.07 1.56 7.81 -52.48 -0.41 1.15 16 9 C 0.22 4.66 4.66 -5.19 -0.02 4.64 16 10 N -0.58 -10.48 2.45 -177.43 -0.43 -10.92 16 11 C 0.16 2.42 5.58 -5.19 -0.03 2.39 16 12 C -0.09 -1.35 5.46 -104.62 -0.57 -1.92 16 13 C -0.09 -1.20 9.70 -39.59 -0.38 -1.59 16 14 C -0.12 -1.49 9.83 -39.55 -0.39 -1.88 16 15 C -0.04 -0.45 6.32 -39.50 -0.25 -0.70 16 16 Cl -0.08 -0.95 28.96 -51.86 -1.50 -2.45 16 17 C -0.11 -1.48 9.83 -39.55 -0.39 -1.86 16 18 C -0.09 -1.18 9.70 -39.59 -0.38 -1.57 16 19 C 0.56 10.49 7.39 -12.19 -0.09 10.40 16 20 O -0.55 -10.66 16.28 5.36 0.09 -10.57 16 21 C -0.11 -1.95 5.21 -104.60 -0.54 -2.49 16 22 C 0.07 1.47 8.74 -16.96 -0.15 1.32 16 23 N -0.22 -4.53 11.48 30.79 0.35 -4.18 16 24 N -0.25 -4.79 11.50 30.49 0.35 -4.44 16 25 C 0.23 3.79 7.85 -16.99 -0.13 3.66 16 26 O -0.47 -6.13 13.57 -18.82 -0.26 -6.38 16 27 C -0.09 -1.50 9.84 -38.61 -0.38 -1.88 16 28 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 29 H 0.04 0.92 8.12 -51.93 -0.42 0.50 16 30 H 0.04 0.97 5.02 -51.93 -0.26 0.71 16 31 H 0.10 1.47 8.02 -51.93 -0.42 1.05 16 32 H 0.09 1.34 7.31 -51.93 -0.38 0.96 16 33 H 0.14 1.86 7.80 -52.48 -0.41 1.45 16 34 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 35 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.14 1.84 8.06 -52.48 -0.42 1.41 16 37 H 0.23 4.78 4.25 -52.49 -0.22 4.56 16 38 H 0.40 2.88 9.06 45.56 0.41 3.30 16 39 H 0.16 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 358.79 15.07 5.41 5.41 Total: -1.00 -27.31 358.79 -7.26 -34.58 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -2.93 Total: 8.99 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -4.05 Total: -2.60 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 1.01 Total: -40.64 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -0.17 Total: -16.96 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.02 Total: 13.68 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -1.50 Total: -2.45 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -27.31 -7.26 -34.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191568874.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.405 kcal (2) G-P(sol) polarization free energy of solvation -27.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds