Wall clock time and date at job start Wed Apr 1 2020 04:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00121 * 2 1 4 4 H 1.48500 * 109.47164 * 270.00287 * 3 2 1 5 5 H 1.48494 * 109.47320 * 30.00432 * 3 2 1 6 6 H 1.48504 * 109.46755 * 150.00302 * 3 2 1 7 7 C 1.37872 * 119.99691 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00204 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99917 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.46506 * 119.99990 * 277.25427 * 10 9 7 12 12 C 1.50694 * 109.46894 * 270.00107 * 11 10 9 13 13 C 1.38243 * 119.98830 * 269.72291 * 12 11 10 14 14 C 1.38210 * 120.01534 * 179.72757 * 13 12 11 15 15 C 1.38355 * 119.98618 * 0.55043 * 14 13 12 16 16 Cl 1.73599 * 120.01536 * 179.70281 * 15 14 13 17 17 C 1.38350 * 119.96939 * 359.72840 * 15 14 13 18 18 C 1.38208 * 119.98973 * 359.97438 * 17 15 14 19 19 C 1.34780 * 120.00225 * 97.25580 * 10 9 7 20 20 O 1.21511 * 119.99938 * 184.15906 * 19 10 9 21 21 C 1.48148 * 119.99917 * 4.15074 * 19 10 9 22 22 C 1.39892 * 121.11931 * 318.80560 * 21 19 10 23 23 N 1.31774 * 119.78198 * 179.97438 * 22 21 19 24 24 N 1.28269 * 122.42287 * 359.97438 * 23 22 21 25 25 C 1.32283 * 122.43275 * 359.72335 * 24 23 22 26 26 O 1.35705 * 120.07926 * 180.29783 * 25 24 23 27 27 C 1.39230 * 119.83921 * 0.53715 * 25 24 23 28 28 H 0.97000 * 119.99611 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47037 * 60.00568 * 9 7 2 30 30 H 1.08997 * 109.47222 * 300.00222 * 9 7 2 31 31 H 1.09001 * 109.46794 * 30.00251 * 11 10 9 32 32 H 1.09002 * 109.47239 * 150.00241 * 11 10 9 33 33 H 1.08003 * 119.99042 * 0.02562 * 13 12 11 34 34 H 1.08008 * 120.00795 * 180.27429 * 14 13 12 35 35 H 1.08002 * 120.00483 * 179.97438 * 17 15 14 36 36 H 1.08004 * 119.99411 * 179.97438 * 18 17 15 37 37 H 1.07998 * 120.11406 * 359.95803 * 22 21 19 38 38 H 0.96698 * 113.99579 * 270.23809 * 26 25 24 39 39 H 1.08001 * 121.12013 * 179.75393 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2508 -2.4992 -0.0005 10 7 2.2028 -3.6127 -0.0005 11 6 2.8006 -4.0654 -1.2592 12 6 1.9342 -5.1364 -1.8701 13 6 2.1570 -6.4653 -1.5608 14 6 1.3591 -7.4476 -2.1163 15 6 0.3446 -7.1017 -2.9911 16 17 -0.6531 -8.3355 -3.6954 17 6 0.1258 -5.7721 -3.3048 18 6 0.9204 -4.7902 -2.7438 19 6 2.5287 -4.2208 1.1573 20 8 3.3741 -5.0935 1.1683 21 6 1.8562 -3.8250 2.4167 22 6 1.5986 -2.4811 2.7073 23 7 0.9984 -2.1587 3.8352 24 7 0.6322 -3.0374 4.6949 25 6 0.8249 -4.3332 4.5111 26 8 0.4126 -5.2220 5.4500 27 6 1.4561 -4.7824 3.3543 28 1 -0.4849 0.8401 0.0004 29 1 0.6239 -2.5567 -0.8904 30 1 0.6245 -2.5571 0.8896 31 1 2.8782 -3.2240 -1.9478 32 1 3.7944 -4.4689 -1.0650 33 1 2.9516 -6.7355 -0.8810 34 1 1.5304 -8.4854 -1.8711 35 1 -0.6657 -5.5014 -3.9879 36 1 0.7500 -3.7522 -2.9889 37 1 1.8909 -1.7102 2.0097 38 1 1.0766 -5.4170 6.1253 39 1 1.6275 -5.8352 3.1849 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191568874.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:04 Heat of formation + Delta-G solvation = -6.811210 kcal Electronic energy + Delta-G solvation = -27613.877101 eV Core-core repulsion = 23547.944846 eV Total energy + Delta-G solvation = -4065.932255 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.45922 -41.00400 -39.96154 -38.59440 -37.57830 -36.95048 -34.84875 -34.40170 -32.70234 -32.13925 -32.04316 -29.41443 -27.90167 -25.87534 -25.52029 -24.82577 -23.74172 -22.66879 -21.14651 -19.63828 -19.24253 -18.70952 -18.01561 -17.91586 -17.68946 -17.12148 -16.70771 -16.50407 -16.40972 -16.12937 -15.78238 -15.06312 -14.75770 -14.62461 -14.47064 -14.40685 -14.31332 -14.25791 -13.50924 -13.21597 -13.13549 -12.88515 -12.68037 -12.65194 -12.43113 -12.29791 -12.19827 -12.06947 -11.78361 -11.73087 -11.52898 -11.28837 -10.80466 -10.61068 -10.43572 -10.01599 -9.71361 -9.58224 -8.23884 -6.40121 -0.71188 -0.26919 0.05566 0.31939 1.11042 1.45506 1.47115 1.52278 1.57941 1.95655 2.29961 2.40182 2.47656 2.71577 3.04521 3.20025 3.28128 3.50810 3.75585 3.78667 3.84077 3.94634 4.13227 4.24514 4.36943 4.43947 4.58802 4.67412 4.77226 4.80041 4.82128 4.99816 5.09980 5.14844 5.21996 5.24746 5.51513 5.60109 5.69795 5.80581 5.96117 6.34296 6.47599 6.72855 6.99550 7.33145 7.54201 8.80706 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.008107 B = 0.004145 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3452.941297 B = 6753.050542 C = 9061.414560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.038 3.962 3 Si 0.948 3.052 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.554 4.554 8 H 0.069 0.931 9 C 0.240 3.760 10 N -0.575 5.575 11 C 0.155 3.845 12 C -0.104 4.104 13 C -0.091 4.091 14 C -0.115 4.115 15 C -0.039 4.039 16 Cl -0.069 7.069 17 C -0.116 4.116 18 C -0.094 4.094 19 C 0.564 3.436 20 O -0.559 6.559 21 C -0.118 4.118 22 C 0.065 3.935 23 N -0.247 5.247 24 N -0.276 5.276 25 C 0.254 3.746 26 O -0.470 6.470 27 C -0.078 4.078 28 H 0.270 0.730 29 H 0.030 0.970 30 H 0.027 0.973 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.136 0.864 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.135 0.865 37 H 0.206 0.794 38 H 0.428 0.572 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.005 -12.976 -2.352 13.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.166 4.166 3 Si 0.774 3.226 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.592 4.592 8 H 0.087 0.913 9 C 0.120 3.880 10 N -0.303 5.303 11 C 0.034 3.966 12 C -0.106 4.106 13 C -0.110 4.110 14 C -0.134 4.134 15 C -0.066 4.066 16 Cl -0.040 7.040 17 C -0.135 4.135 18 C -0.113 4.113 19 C 0.350 3.650 20 O -0.440 6.440 21 C -0.132 4.132 22 C -0.100 4.100 23 N -0.089 5.089 24 N -0.127 5.127 25 C 0.066 3.934 26 O -0.279 6.279 27 C -0.109 4.109 28 H 0.079 0.921 29 H 0.048 0.952 30 H 0.045 0.955 31 H 0.118 0.882 32 H 0.112 0.888 33 H 0.154 0.846 34 H 0.167 0.833 35 H 0.164 0.836 36 H 0.153 0.847 37 H 0.222 0.778 38 H 0.290 0.710 39 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 2.072 -12.296 -1.715 12.587 hybrid contribution 0.811 -0.026 -0.695 1.068 sum 2.882 -12.323 -2.409 12.882 Atomic orbital electron populations 1.69999 1.07345 1.28530 1.48279 1.25567 0.95299 1.02058 0.93660 0.85687 0.78974 0.79516 0.78452 1.19775 1.21340 1.18992 1.21566 0.93944 0.90656 1.52989 0.91322 1.19486 0.87673 0.82809 0.98046 1.48090 1.43873 1.32800 1.05566 1.20415 0.95631 0.96036 0.84541 1.20404 0.97706 0.95004 0.97449 1.21219 0.99461 0.91749 0.98594 1.21224 0.94448 1.01096 0.96628 1.21063 0.95908 0.90006 0.99641 1.98358 1.68773 1.53838 1.83076 1.21217 1.00615 0.90629 1.01039 1.21234 0.94069 1.00046 0.95947 1.17944 0.82156 0.81507 0.83356 1.90686 1.33547 1.33130 1.86621 1.21279 1.00204 0.94839 0.96867 1.26028 0.91373 0.97478 0.95118 1.73089 1.08872 1.26120 1.00843 1.72645 1.14296 1.01029 1.24776 1.20689 0.93609 0.88373 0.90720 1.84774 1.44863 1.57566 1.40712 1.22811 0.93139 1.02789 0.92142 0.92107 0.95157 0.95519 0.88188 0.88809 0.84586 0.83285 0.83573 0.84679 0.77801 0.71010 0.79938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.38 13.29 21.45 0.28 -46.09 16 2 C 0.04 1.80 5.45 84.65 0.46 2.26 16 3 Si 0.95 38.67 29.54 68.60 2.03 40.70 16 4 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 5 H -0.29 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 7 C -0.55 -25.12 6.91 25.60 0.18 -24.94 16 8 H 0.07 3.09 7.81 -2.91 -0.02 3.06 16 9 C 0.24 10.19 4.66 85.64 0.40 10.59 16 10 N -0.58 -20.92 2.45 -833.55 -2.04 -22.95 16 11 C 0.16 4.78 5.58 85.63 0.48 5.26 16 12 C -0.10 -2.94 5.46 -19.86 -0.11 -3.05 16 13 C -0.09 -2.38 9.70 22.26 0.22 -2.16 16 14 C -0.12 -2.69 9.83 22.29 0.22 -2.47 16 15 C -0.04 -0.94 6.32 22.32 0.14 -0.80 16 16 Cl -0.07 -1.47 28.96 -2.72 -0.08 -1.55 16 17 C -0.12 -2.84 9.83 22.29 0.22 -2.62 16 18 C -0.09 -2.54 9.70 22.26 0.22 -2.33 16 19 C 0.56 20.63 7.39 86.88 0.64 21.27 16 20 O -0.56 -20.80 16.28 -3.75 -0.06 -20.86 16 21 C -0.12 -4.24 5.21 -19.85 -0.10 -4.34 16 22 C 0.06 2.61 8.74 85.10 0.74 3.35 16 23 N -0.25 -10.22 11.48 -56.51 -0.65 -10.87 16 24 N -0.28 -10.27 11.50 -170.29 -1.96 -12.23 16 25 C 0.25 7.68 7.85 84.86 0.67 8.35 16 26 O -0.47 -10.63 13.57 -90.26 -1.23 -11.85 16 27 C -0.08 -2.34 9.84 22.90 0.23 -2.11 16 28 H 0.27 13.36 8.31 -92.71 -0.77 12.59 16 29 H 0.03 1.36 8.12 -2.39 -0.02 1.34 16 30 H 0.03 1.25 5.02 -2.39 -0.01 1.24 16 31 H 0.10 2.99 8.02 -2.39 -0.02 2.97 16 32 H 0.09 2.77 7.31 -2.39 -0.02 2.76 16 33 H 0.14 3.52 7.80 -2.91 -0.02 3.50 16 34 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 35 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 36 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 37 H 0.21 9.03 4.25 -2.91 -0.01 9.02 16 38 H 0.43 4.57 9.06 -74.06 -0.67 3.90 16 39 H 0.18 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -57.88 358.79 1.35 -56.53 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.46 Total: 22.92 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 4.59 Total: 6.26 kcal Atomic # 7 Polarization: -87.79 SS G_CDS: -4.36 Total: -92.15 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -1.29 Total: -32.71 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 2.03 Total: 40.70 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -0.08 Total: -1.55 kcal Total: -57.88 1.35 -56.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191568874.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.717 kcal (2) G-P(sol) polarization free energy of solvation -57.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds