Wall clock time and date at job start Wed Apr 1 2020 04:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76205 * 102.99975 * 2 1 4 4 C 1.38973 * 120.07644 * 179.97438 * 3 2 1 5 5 C 1.38088 * 119.91507 * 179.97438 * 4 3 2 6 6 C 1.38303 * 120.07914 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.91863 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47141 * 340.00369 * 7 6 5 9 9 O 1.42894 * 109.47450 * 220.00094 * 7 6 5 10 10 C 1.53002 * 109.46983 * 99.99686 * 7 6 5 11 11 H 1.08991 * 109.47479 * 300.00124 * 10 7 6 12 12 C 1.52999 * 109.47276 * 180.02562 * 10 7 6 13 13 O 1.42903 * 109.47256 * 305.00584 * 12 10 7 14 14 N 1.46497 * 109.46869 * 60.00245 * 10 7 6 15 15 S 1.65603 * 120.00045 * 214.99746 * 14 10 7 16 16 O 1.42101 * 106.40419 * 178.54133 * 15 14 10 17 17 O 1.42099 * 106.40121 * 311.45943 * 15 14 10 18 18 C 1.76200 * 107.21601 * 64.99913 * 15 14 10 19 19 H 1.08002 * 120.00264 * 0.02562 * 18 15 14 20 20 C 1.37879 * 120.00072 * 179.97438 * 18 15 14 21 21 N 1.31515 * 120.00050 * 180.02562 * 20 18 15 22 22 Si 1.86805 * 119.99650 * 0.02562 * 20 18 15 23 23 H 1.48497 * 109.46959 * 90.00108 * 22 20 18 24 24 H 1.48502 * 109.46972 * 209.99846 * 22 20 18 25 25 H 1.48501 * 109.47169 * 329.99681 * 22 20 18 26 26 C 1.38297 * 120.16247 * 0.27405 * 6 5 4 27 27 C 1.38083 * 120.08179 * 359.49169 * 26 6 5 28 28 H 1.08999 * 109.46803 * 60.00458 * 1 2 3 29 29 H 1.08999 * 109.47127 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47227 * 300.00474 * 1 2 3 31 31 H 1.07994 * 120.04429 * 359.95573 * 4 3 2 32 32 H 1.07994 * 119.95751 * 179.97438 * 5 4 3 33 33 H 0.96706 * 114.00015 * 300.00158 * 9 7 6 34 34 H 1.08997 * 109.47286 * 185.00144 * 12 10 7 35 35 H 1.09008 * 109.47201 * 64.99925 * 12 10 7 36 36 H 0.96700 * 114.00311 * 180.02562 * 13 12 10 37 37 H 0.96999 * 120.00007 * 34.99809 * 14 10 7 38 38 H 0.96998 * 119.99868 * 180.02562 * 21 20 18 39 39 H 1.08001 * 119.95916 * 179.72161 * 26 6 5 40 40 H 1.07997 * 120.04635 * 180.23306 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 3.5389 2.1250 0.0005 5 6 3.8457 3.4713 0.0000 6 6 2.8328 4.4131 -0.0016 7 6 3.1718 5.8815 -0.0016 8 1 4.1941 6.0184 0.3511 9 8 2.2723 6.5780 0.8630 10 6 3.0444 6.4343 -1.4226 11 1 3.7305 5.9030 -2.0820 12 6 3.3891 7.9249 -1.4227 13 8 2.5673 8.6041 -0.4712 14 7 1.6705 6.2503 -1.8967 15 16 1.3835 5.9123 -3.4922 16 8 -0.0232 5.7594 -3.6233 17 8 2.1361 6.8547 -4.2437 18 6 2.0890 4.3326 -3.8258 19 1 2.5906 3.7882 -3.0394 20 6 1.9998 3.7908 -5.0906 21 7 2.5259 2.6115 -5.3394 22 14 1.1315 4.7321 -6.4506 23 1 2.1110 5.5946 -7.1589 24 1 0.5313 3.7722 -7.4117 25 1 0.0618 5.5777 -5.8624 26 6 1.5098 4.0106 0.0030 27 6 1.1953 2.6661 -0.0013 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 4.3302 1.3901 0.0017 32 1 4.8778 3.7892 0.0008 33 1 1.3425 6.4998 0.6088 34 1 3.2130 8.3385 -2.4157 35 1 4.4379 8.0554 -1.1555 36 1 2.7315 9.5555 -0.4177 37 1 0.9290 6.3264 -1.2760 38 1 2.4634 2.2306 -6.2293 39 1 0.7215 4.7489 0.0063 40 1 0.1619 2.3524 -0.0015 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192994059.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:58 Heat of formation + Delta-G solvation = -147.886625 kcal Electronic energy + Delta-G solvation = -27740.388861 eV Core-core repulsion = 23773.534023 eV Total energy + Delta-G solvation = -3966.854838 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.72031 -37.68783 -35.81890 -35.62237 -34.46703 -33.74520 -33.02832 -31.52514 -30.72417 -29.08969 -28.50240 -26.40875 -25.47155 -22.45739 -21.91027 -20.67213 -19.34014 -17.91928 -17.65140 -17.11451 -16.95027 -16.41914 -16.34604 -15.42037 -15.06591 -14.67561 -14.48031 -14.21093 -14.04000 -13.76493 -13.73917 -13.46939 -13.39715 -13.23466 -12.95651 -12.80456 -12.46714 -12.41457 -11.95126 -11.69394 -11.51431 -11.40591 -11.15794 -10.92307 -10.67969 -10.65344 -10.54432 -10.22923 -10.05190 -9.90780 -9.54722 -9.42365 -9.22151 -9.09922 -8.74967 -8.60271 -7.18442 -6.79759 -5.33827 1.39630 1.63596 1.67811 2.02200 2.53185 3.04629 3.14777 3.24341 3.86413 3.93095 4.16828 4.50716 4.59875 4.67025 4.80190 4.95008 5.06489 5.10719 5.11797 5.15342 5.28312 5.44539 5.51983 5.54371 5.58508 5.67235 5.74132 5.85915 5.94351 6.03843 6.16703 6.20704 6.47309 6.48947 6.52299 6.77553 7.10551 7.46634 7.58848 7.83818 7.90048 8.23963 8.71025 10.31813 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.008920 B = 0.006194 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3138.170381 B = 4519.534196 C = 6714.289640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 S -0.127 6.127 3 C -0.077 4.077 4 C -0.094 4.094 5 C -0.090 4.090 6 C -0.114 4.114 7 C 0.152 3.848 8 H 0.112 0.888 9 O -0.531 6.531 10 C 0.135 3.865 11 H 0.111 0.889 12 C 0.061 3.939 13 O -0.552 6.552 14 N -1.110 6.110 15 S 2.673 3.327 16 O -1.010 7.010 17 O -1.013 7.013 18 C -1.011 5.011 19 H 0.125 0.875 20 C 0.156 3.844 21 N -0.817 5.817 22 Si 0.796 3.204 23 H -0.247 1.247 24 H -0.256 1.256 25 H -0.222 1.222 26 C -0.078 4.078 27 C -0.123 4.123 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.368 0.632 34 H 0.063 0.937 35 H 0.048 0.952 36 H 0.367 0.633 37 H 0.401 0.599 38 H 0.279 0.721 39 H 0.119 0.881 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.981 1.300 12.283 12.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 S 0.115 5.885 3 C -0.189 4.189 4 C -0.118 4.118 5 C -0.110 4.110 6 C -0.117 4.117 7 C 0.091 3.909 8 H 0.129 0.871 9 O -0.336 6.336 10 C 0.026 3.974 11 H 0.129 0.871 12 C -0.019 4.019 13 O -0.355 6.355 14 N -0.866 5.866 15 S 2.775 3.225 16 O -1.000 7.000 17 O -1.003 7.003 18 C -1.146 5.146 19 H 0.143 0.857 20 C -0.064 4.064 21 N -0.446 5.446 22 Si 0.617 3.383 23 H -0.171 1.171 24 H -0.180 1.180 25 H -0.144 1.144 26 C -0.098 4.098 27 C -0.146 4.146 28 H 0.107 0.893 29 H 0.123 0.877 30 H 0.101 0.899 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.216 0.784 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.212 0.788 37 H 0.234 0.766 38 H 0.090 0.910 39 H 0.137 0.863 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.670 0.180 11.855 11.973 hybrid contribution -1.368 1.022 -0.980 1.969 sum 0.302 1.202 10.875 10.945 Atomic orbital electron populations 1.23653 0.94882 1.06794 1.05883 1.85278 1.06480 1.03989 1.92728 1.21599 0.96744 0.95983 1.04606 1.20624 0.94139 0.95984 1.01028 1.20815 0.98814 0.92123 0.99242 1.20454 0.93847 0.96208 1.01199 1.20958 0.94907 0.85865 0.89184 0.87067 1.86617 1.19663 1.74429 1.52873 1.21476 0.84844 0.94252 0.96805 0.87099 1.22718 0.93293 0.92886 0.92978 1.86604 1.63488 1.23751 1.61674 1.55487 1.11760 1.89454 1.29857 1.01450 0.73750 0.76774 0.70563 1.93471 1.33374 1.88757 1.84391 1.93399 1.73172 1.65143 1.68540 1.30389 1.53436 1.25261 1.05501 0.85724 1.24368 0.90970 0.93697 0.97319 1.69999 1.37132 1.14625 1.22814 0.87949 0.83000 0.82492 0.84893 1.17092 1.17971 1.14435 1.20646 0.95740 0.95138 0.98273 1.21040 0.98095 0.93076 1.02437 0.89292 0.87699 0.89944 0.85724 0.85542 0.78444 0.91882 0.93385 0.78755 0.76634 0.91019 0.86315 0.85986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.15 101.05 0.92 -0.69 16 2 S -0.13 -1.82 22.56 -107.50 -2.43 -4.24 16 3 C -0.08 -1.24 6.11 -39.04 -0.24 -1.48 16 4 C -0.09 -1.47 9.79 -39.36 -0.39 -1.85 16 5 C -0.09 -1.32 9.66 -39.61 -0.38 -1.71 16 6 C -0.11 -1.72 4.89 -104.58 -0.51 -2.23 16 7 C 0.15 2.08 3.09 -27.88 -0.09 2.00 16 8 H 0.11 1.32 8.00 -51.93 -0.42 0.91 16 9 O -0.53 -7.29 11.01 -57.93 -0.64 -7.93 16 10 C 0.14 2.13 2.48 -67.93 -0.17 1.96 16 11 H 0.11 1.85 7.85 -51.93 -0.41 1.44 16 12 C 0.06 0.86 6.88 37.16 0.26 1.11 16 13 O -0.55 -7.13 11.37 -57.93 -0.66 -7.79 16 14 N -1.11 -20.00 4.31 -4.90 -0.02 -20.02 16 15 S 2.67 64.40 4.15 -107.50 -0.45 63.95 16 16 O -1.01 -26.62 16.02 -57.17 -0.92 -27.53 16 17 O -1.01 -26.05 16.04 -57.17 -0.92 -26.96 16 18 C -1.01 -27.12 10.12 30.60 0.31 -26.81 16 19 H 0.12 3.40 8.06 -52.49 -0.42 2.98 16 20 C 0.16 4.39 5.47 -17.82 -0.10 4.29 16 21 N -0.82 -23.11 13.96 55.43 0.77 -22.34 16 22 Si 0.80 20.37 26.54 -169.99 -4.51 15.86 16 23 H -0.25 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.22 -5.83 5.61 56.52 0.32 -5.51 16 26 C -0.08 -1.20 8.35 -39.62 -0.33 -1.53 16 27 C -0.12 -1.94 9.36 -39.37 -0.37 -2.31 16 28 H 0.09 1.08 7.75 -51.92 -0.40 0.68 16 29 H 0.10 0.95 8.14 -51.92 -0.42 0.53 16 30 H 0.08 0.80 7.75 -51.93 -0.40 0.40 16 31 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.13 1.50 8.03 -52.49 -0.42 1.08 16 33 H 0.37 4.54 6.03 45.56 0.27 4.82 16 34 H 0.06 1.00 7.59 -51.93 -0.39 0.61 16 35 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 36 H 0.37 3.25 9.12 45.56 0.42 3.66 16 37 H 0.40 6.31 6.17 -34.47 -0.21 6.09 16 38 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.12 1.60 5.69 -52.49 -0.30 1.30 16 40 H 0.12 1.70 5.88 -52.49 -0.31 1.39 16 LS Contribution 351.71 15.07 5.30 5.30 Total: -1.00 -34.64 351.71 -9.02 -43.66 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: -3.48 Total: 17.29 kcal Atomic # 6 Polarization: -28.17 SS G_CDS: -1.08 Total: -29.25 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: 0.75 Total: -42.36 kcal Atomic # 8 Polarization: -67.09 SS G_CDS: -3.13 Total: -70.22 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.51 Total: 15.86 kcal Atomic # 16 Polarization: 62.58 SS G_CDS: -2.87 Total: 59.70 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.64 -9.02 -43.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192994059.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.227 kcal (2) G-P(sol) polarization free energy of solvation -34.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds