Wall clock time and date at job start Wed Apr 1 2020 04:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00413 * 2 1 4 4 H 1.48504 * 109.46871 * 240.00063 * 3 2 1 5 5 H 1.48497 * 109.46972 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47278 * 119.99487 * 3 2 1 7 7 C 1.37884 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00150 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99449 * 0.02562 * 7 2 1 10 10 C 1.50704 * 109.47142 * 179.97438 * 9 7 2 11 11 C 1.38279 * 119.92713 * 89.99742 * 10 9 7 12 12 C 1.38114 * 120.06572 * 179.97438 * 11 10 9 13 13 C 1.38862 * 119.93407 * 0.02562 * 12 11 10 14 14 N 1.39954 * 120.07274 * 180.02562 * 13 12 11 15 15 C 1.34774 * 119.99922 * 146.77742 * 14 13 12 16 16 O 1.21579 * 120.00136 * 354.86541 * 15 14 13 17 17 N 1.34781 * 119.99866 * 174.59444 * 15 14 13 18 18 N 1.40098 * 119.99673 * 0.02562 * 17 15 14 19 19 C 1.34781 * 119.99941 * 180.02562 * 18 17 15 20 20 O 1.21562 * 119.99746 * 359.97438 * 19 18 17 21 21 C 1.47747 * 120.00261 * 179.97438 * 19 18 17 22 22 C 1.39353 * 124.11706 * 179.72306 * 21 19 18 23 23 N 1.30094 * 112.14379 * 179.84507 * 22 21 19 24 24 S 1.55924 * 108.75586 * 0.40030 * 23 22 21 25 25 N 1.31496 * 124.11384 * 0.02562 * 21 19 18 26 26 C 1.38868 * 119.85983 * 0.27663 * 13 12 11 27 27 C 1.38117 * 119.92497 * 359.45212 * 26 13 12 28 28 H 0.96996 * 119.99604 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47384 * 60.00296 * 9 7 2 30 30 H 1.08995 * 109.47979 * 299.99803 * 9 7 2 31 31 H 1.07999 * 119.97006 * 0.02562 * 11 10 9 32 32 H 1.08010 * 120.03442 * 180.02562 * 12 11 10 33 33 H 0.96998 * 119.99373 * 326.77148 * 14 13 12 34 34 H 0.96995 * 120.00138 * 179.97438 * 17 15 14 35 35 H 0.97002 * 120.00419 * 359.97438 * 18 17 15 36 36 H 1.07999 * 123.92683 * 0.02562 * 22 21 19 37 37 H 1.07994 * 120.03698 * 179.70265 * 26 13 12 38 38 H 1.08004 * 119.96094 * 180.27458 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6962 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.6785 -4.1690 1.1989 12 6 3.5754 -5.2193 1.2023 13 6 4.0275 -5.7482 0.0006 14 7 4.9361 -6.8128 0.0006 15 6 4.8874 -7.7402 -0.9761 16 8 3.9975 -7.7053 -1.8038 17 7 5.8283 -8.7032 -1.0385 18 7 6.8566 -8.7403 -0.0877 19 6 7.7979 -9.7029 -0.1503 20 8 7.7543 -10.5392 -1.0315 21 6 8.8827 -9.7418 0.8520 22 6 9.8947 -10.6996 0.8717 23 7 10.7285 -10.5120 1.8525 24 16 10.2715 -9.2634 2.6671 25 7 9.0075 -8.8802 1.8374 26 6 3.5803 -5.2153 -1.2012 27 6 2.6789 -4.1687 -1.1978 28 1 -0.4849 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6239 -2.5568 0.8902 31 1 2.3262 -3.7575 2.1333 32 1 3.9250 -5.6287 2.1387 33 1 5.6008 -6.8829 0.7035 34 1 5.7931 -9.3709 -1.7411 35 1 6.8917 -8.0728 0.6152 36 1 9.9789 -11.5025 0.1542 37 1 3.9337 -5.6213 -2.1374 38 1 2.3273 -3.7567 -2.1322 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209255579.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:35 Heat of formation + Delta-G solvation = 42.457627 kcal Electronic energy + Delta-G solvation = -25759.738765 eV Core-core repulsion = 21730.279425 eV Total energy + Delta-G solvation = -4029.459341 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.44391 -41.86318 -40.41389 -39.62882 -37.12531 -36.38480 -34.96519 -34.81373 -32.55420 -31.84759 -31.72551 -28.63330 -28.30268 -25.34962 -24.62874 -23.89397 -23.04761 -22.04784 -21.57806 -20.61883 -20.39926 -19.13926 -18.53279 -18.42427 -17.53171 -17.39928 -16.95260 -16.74911 -16.42180 -16.30642 -15.92200 -15.86816 -15.58333 -15.31000 -14.62114 -14.49945 -14.27507 -13.73270 -13.32492 -13.31504 -13.19554 -12.77148 -12.63418 -12.59292 -12.47022 -12.31731 -12.15025 -12.13691 -11.90653 -11.64007 -11.52940 -11.38068 -11.04363 -10.57520 -10.31649 -9.76168 -9.72663 -8.88555 -8.16087 -6.30401 -0.72445 0.19211 0.33763 0.42681 0.50692 0.58368 0.69510 1.41654 1.44539 1.52555 1.63501 1.65576 1.90787 2.41997 2.95727 3.01412 3.13426 3.43747 3.69851 3.94985 4.04669 4.15006 4.39908 4.49145 4.54005 4.60433 4.67785 4.98181 5.10023 5.13666 5.31927 5.33087 5.40883 5.43470 5.54763 5.60658 5.77759 5.98925 6.10239 6.12812 6.25779 6.30117 6.82306 6.89144 7.14655 7.37826 8.91823 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.016527 B = 0.001905 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.801673 B =14692.029436 C =15855.312984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.966 3.034 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.056 3.944 10 C -0.073 4.073 11 C -0.111 4.111 12 C -0.123 4.123 13 C 0.133 3.867 14 N -0.662 5.662 15 C 0.715 3.285 16 O -0.587 6.587 17 N -0.517 5.517 18 N -0.500 5.500 19 C 0.616 3.384 20 O -0.538 6.538 21 C 0.000 4.000 22 C 0.098 3.902 23 N -0.602 5.602 24 S 0.818 5.182 25 N -0.564 5.564 26 C -0.121 4.121 27 C -0.118 4.118 28 H 0.265 0.735 29 H -0.001 1.001 30 H 0.008 0.992 31 H 0.129 0.871 32 H 0.162 0.838 33 H 0.418 0.582 34 H 0.448 0.552 35 H 0.439 0.561 36 H 0.228 0.772 37 H 0.125 0.875 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.696 -22.228 8.240 34.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.564 4.564 8 H 0.075 0.925 9 C 0.019 3.981 10 C -0.074 4.074 11 C -0.129 4.129 12 C -0.143 4.143 13 C 0.039 3.961 14 N -0.313 5.313 15 C 0.415 3.585 16 O -0.461 6.461 17 N -0.274 5.274 18 N -0.253 5.253 19 C 0.397 3.603 20 O -0.412 6.412 21 C -0.174 4.174 22 C -0.094 4.094 23 N -0.444 5.444 24 S 0.859 5.141 25 N -0.417 5.417 26 C -0.142 4.142 27 C -0.137 4.137 28 H 0.074 0.926 29 H 0.017 0.983 30 H 0.026 0.974 31 H 0.147 0.853 32 H 0.180 0.820 33 H 0.257 0.743 34 H 0.295 0.705 35 H 0.284 0.716 36 H 0.244 0.756 37 H 0.143 0.857 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 24.734 -21.739 8.775 34.078 hybrid contribution -0.614 0.252 -1.466 1.609 sum 24.120 -21.487 7.309 33.119 Atomic orbital electron populations 1.70081 1.07700 1.27941 1.51362 1.25954 0.95775 1.03167 0.94716 0.85489 0.78259 0.78060 0.79186 1.19519 1.20801 1.18890 1.21358 0.93153 0.91094 1.50793 0.92478 1.18101 0.92923 0.91199 0.95887 1.20424 0.97557 0.95573 0.93810 1.20975 0.97852 0.96533 0.97565 1.20997 0.98280 0.97976 0.97055 1.17282 0.95011 0.89821 0.93939 1.42214 1.36145 1.24178 1.28780 1.15665 0.81195 0.79227 0.82435 1.91079 1.36246 1.75380 1.43360 1.44417 1.20660 1.33430 1.28877 1.44549 1.21021 1.32749 1.27009 1.16769 0.79617 0.80371 0.83504 1.90889 1.75144 1.39352 1.35857 1.21696 1.01094 0.96833 0.97773 1.23859 0.88290 1.00526 0.96690 1.72227 1.33298 1.24961 1.13945 1.79027 1.02978 1.07551 1.24520 1.72227 1.26780 1.30877 1.11858 1.21014 0.99228 0.96051 0.97876 1.20910 0.98377 0.96649 0.97790 0.92649 0.98288 0.97395 0.85326 0.82031 0.74269 0.70453 0.71638 0.75587 0.85676 0.87132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.23 13.29 21.45 0.28 -55.95 16 2 C 0.00 0.11 5.46 84.66 0.46 0.57 16 3 Si 0.97 44.01 29.54 68.60 2.03 46.03 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 7 C -0.53 -29.86 9.09 25.60 0.23 -29.63 16 8 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 9 C 0.06 3.00 5.10 29.10 0.15 3.15 16 10 C -0.07 -3.22 5.07 -19.84 -0.10 -3.32 16 11 C -0.11 -4.01 9.69 22.25 0.22 -3.79 16 12 C -0.12 -3.42 9.96 22.39 0.22 -3.20 16 13 C 0.13 3.88 6.28 38.14 0.24 4.12 16 14 N -0.66 -13.81 5.30 -317.18 -1.68 -15.50 16 15 C 0.71 17.15 8.42 179.05 1.51 18.66 16 16 O -0.59 -19.41 14.87 -3.97 -0.06 -19.47 16 17 N -0.52 -9.20 6.26 -184.75 -1.16 -10.35 16 18 N -0.50 -6.43 6.25 -175.67 -1.10 -7.53 16 19 C 0.62 8.70 7.94 86.76 0.69 9.38 16 20 O -0.54 -10.33 16.64 -3.91 -0.07 -10.39 16 21 C 0.00 0.00 6.81 41.98 0.29 0.28 16 22 C 0.10 0.90 11.22 85.22 0.96 1.86 16 23 N -0.60 -5.63 11.41 -92.43 -1.05 -6.69 16 24 S 0.82 3.93 23.69 -56.49 -1.34 2.60 16 25 N -0.56 -4.79 11.00 -80.57 -0.89 -5.68 16 26 C -0.12 -4.31 8.65 22.39 0.19 -4.12 16 27 C -0.12 -4.89 9.69 22.25 0.22 -4.67 16 28 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 29 H 0.00 -0.07 8.08 -2.39 -0.02 -0.09 16 30 H 0.01 0.44 8.08 -2.39 -0.02 0.42 16 31 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 32 H 0.16 3.00 8.06 -2.91 -0.02 2.97 16 33 H 0.42 5.24 6.76 -92.71 -0.63 4.62 16 34 H 0.45 8.07 8.10 -213.33 -1.73 6.34 16 35 H 0.44 3.85 6.30 -213.32 -1.34 2.50 16 36 H 0.23 1.37 8.06 -2.91 -0.02 1.35 16 37 H 0.13 4.45 6.42 -2.91 -0.02 4.43 16 38 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 Total: -1.00 -76.21 354.99 -2.28 -78.49 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -2.52 Total: 15.14 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: 5.27 Total: -10.70 kcal Atomic # 7 Polarization: -96.10 SS G_CDS: -5.59 Total: -101.70 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -0.12 Total: -29.86 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -1.34 Total: 2.60 kcal Total: -76.21 -2.28 -78.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209255579.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.946 kcal (2) G-P(sol) polarization free energy of solvation -76.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds