Wall clock time and date at job start Wed Apr 1 2020 04:53:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 N 1.30940 * 122.90349 * 2 1
4 4 C 1.29428 * 117.36340 * 180.02562 * 3 2 1
5 5 C 1.50703 * 124.80656 * 179.97438 * 4 3 2
6 6 N 1.46498 * 109.47212 * 89.99411 * 5 4 3
7 7 S 1.65602 * 119.99612 * 164.72359 * 6 5 4
8 8 O 1.42109 * 104.27511 * 181.34803 * 7 6 5
9 9 O 1.42098 * 104.28120 * 309.20801 * 7 6 5
10 10 C 1.81394 * 104.44973 * 65.28269 * 7 6 5
11 11 C 1.53003 * 109.47387 * 179.97438 * 10 7 6
12 12 C 1.53002 * 109.47130 * 179.97438 * 11 10 7
13 13 C 1.50692 * 109.47012 * 179.97438 * 12 11 10
14 14 H 1.08003 * 120.00112 * 0.02562 * 13 12 11
15 15 C 1.37882 * 120.00231 * 179.97438 * 13 12 11
16 16 N 1.31515 * 119.99857 * 0.02562 * 15 13 12
17 17 Si 1.86795 * 120.00269 * 180.02562 * 15 13 12
18 18 H 1.48502 * 109.47241 * 60.00170 * 17 15 13
19 19 H 1.48497 * 109.47563 * 179.97438 * 17 15 13
20 20 H 1.48505 * 109.47390 * 300.00100 * 17 15 13
21 21 S 1.70954 * 110.39077 * 0.24261 * 4 3 2
22 22 C 1.35663 * 122.90340 * 179.97438 * 2 1 3
23 23 C 1.46685 * 126.13258 * 0.04512 * 22 2 1
24 24 N 1.34772 * 119.99955 * 179.97438 * 23 22 2
25 25 O 1.21688 * 119.99708 * 359.97438 * 23 22 2
26 26 H 1.09002 * 109.46733 * 90.02289 * 1 2 3
27 27 H 1.09001 * 109.47223 * 210.02458 * 1 2 3
28 28 H 1.08995 * 109.47017 * 330.02295 * 1 2 3
29 29 H 1.08996 * 109.47013 * 329.99717 * 5 4 3
30 30 H 1.08999 * 109.47128 * 209.99930 * 5 4 3
31 31 H 0.97001 * 120.00384 * 345.00836 * 6 5 4
32 32 H 1.09009 * 109.47044 * 299.99503 * 10 7 6
33 33 H 1.09001 * 109.47747 * 59.99183 * 10 7 6
34 34 H 1.09000 * 109.46375 * 299.99213 * 11 10 7
35 35 H 1.08993 * 109.47045 * 59.99537 * 11 10 7
36 36 H 1.09003 * 109.47270 * 300.00013 * 12 11 10
37 37 H 1.09000 * 109.46896 * 60.00012 * 12 11 10
38 38 H 0.96993 * 120.00008 * 179.97438 * 16 15 13
39 39 H 0.96994 * 120.00157 * 359.97438 * 24 23 22
40 40 H 0.97000 * 119.99540 * 179.97438 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2183 1.0994 0.0000
4 6 3.5066 0.9744 -0.0005
5 6 4.4822 2.1230 -0.0012
6 7 4.7989 2.4955 1.3798
7 16 6.1101 3.4555 1.6985
8 8 6.1205 3.5758 3.1144
9 8 7.1812 2.8259 1.0089
10 6 5.7044 5.0465 0.9275
11 6 6.8527 6.0315 1.1559
12 6 6.5107 7.3733 0.5051
13 6 7.6413 8.3436 0.7305
14 1 8.5166 8.0341 1.2825
15 6 7.5590 9.6263 0.2313
16 7 6.4935 10.0030 -0.4412
17 14 8.9609 10.8288 0.5102
18 1 10.2048 10.2879 -0.0942
19 1 8.6296 12.1308 -0.1224
20 1 9.1633 11.0238 1.9684
21 16 3.9447 -0.6780 -0.0079
22 6 2.2440 -1.1390 0.0005
23 6 1.7192 -2.5088 0.0002
24 7 2.5680 -3.5556 0.0002
25 8 0.5174 -2.6998 -0.0001
26 1 -0.3633 -0.0004 -1.0277
27 1 -0.3634 -0.8898 0.5142
28 1 -0.3633 0.8902 0.5135
29 1 4.0390 2.9759 -0.5150
30 1 5.3955 1.8236 -0.5153
31 1 4.2429 2.1766 2.1079
32 1 5.5550 4.9040 -0.1428
33 1 4.7917 5.4435 1.3720
34 1 7.0015 6.1740 2.2263
35 1 7.7655 5.6348 0.7117
36 1 6.3619 7.2305 -0.5653
37 1 5.5977 7.7702 0.9490
38 1 6.4354 10.9054 -0.7920
39 1 3.5259 -3.4033 0.0001
40 1 2.2209 -4.4614 0.0004
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001213630617.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:53:52
Heat of formation + Delta-G solvation = -113.313285 kcal
Electronic energy + Delta-G solvation = -24755.968908 eV
Core-core repulsion = 20822.906034 eV
Total energy + Delta-G solvation = -3933.062874 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 347.081 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-41.52603 -40.09038 -38.23188 -37.10670 -36.64888 -36.43571 -34.89033 -34.14000
-32.86374 -29.63315 -29.39768 -28.64689 -25.60284 -24.00980 -23.42849 -22.40649
-20.67953 -20.45800 -19.47794 -18.76767 -18.61884 -18.29355 -17.65496 -17.21330
-17.13450 -16.63401 -16.47195 -16.29028 -15.74010 -15.50959 -15.29093 -15.08666
-14.63009 -14.47150 -14.28623 -13.99876 -13.62561 -13.50117 -13.42738 -13.21118
-13.14028 -13.06553 -12.92601 -12.71449 -12.63210 -12.43248 -12.15404 -11.70568
-11.46102 -11.36271 -11.15801 -10.92875 -10.90134 -10.64470 -10.55116 -10.51290
-9.93545 -8.20849 -6.31557 -1.09207 -0.71884 -0.00002 0.37806 1.17077
1.41658 1.43820 1.51716 1.77260 1.99923 2.33261 2.41162 2.69714
2.76630 3.12787 3.23501 3.52827 3.76003 3.77497 3.95631 4.00982
4.15751 4.37530 4.43175 4.56001 4.62544 4.70082 4.70794 4.84686
5.01463 5.10771 5.24180 5.48352 5.66494 5.74143 5.82079 5.86408
6.14848 6.21869 6.46864 6.84570 7.08725 7.37645 8.90234
Molecular weight = 347.08amu
Principal moments of inertia in cm(-1)
A = 0.025052 B = 0.001962 C = 0.001881
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1117.407367 B =14265.704192 C =14878.463235
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.088 4.088
2 C 0.136 3.864
3 N -0.478 5.478
4 C 0.041 3.959
5 C 0.179 3.821
6 N -1.109 6.109
7 S 2.637 3.363
8 O -0.987 6.987
9 O -0.978 6.978
10 C -0.611 4.611
11 C -0.107 4.107
12 C 0.030 3.970
13 C -0.552 4.552
14 H 0.061 0.939
15 C 0.001 3.999
16 N -0.930 5.930
17 Si 0.962 3.038
18 H -0.266 1.266
19 H -0.283 1.283
20 H -0.268 1.268
21 S 0.253 5.747
22 C -0.323 4.323
23 C 0.602 3.398
24 N -0.828 5.828
25 O -0.559 6.559
26 H 0.086 0.914
27 H 0.091 0.909
28 H 0.081 0.919
29 H 0.120 0.880
30 H 0.124 0.876
31 H 0.426 0.574
32 H 0.152 0.848
33 H 0.145 0.855
34 H 0.065 0.935
35 H 0.071 0.929
36 H 0.005 0.995
37 H 0.001 0.999
38 H 0.264 0.736
39 H 0.412 0.588
40 H 0.420 0.580
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.817 -28.116 -0.858 29.195
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.003 4.003
3 N -0.194 5.194
4 C -0.234 4.234
5 C 0.050 3.950
6 N -0.870 5.870
7 S 2.732 3.268
8 O -0.978 6.978
9 O -0.968 6.968
10 C -0.742 4.742
11 C -0.146 4.146
12 C -0.009 4.009
13 C -0.590 4.590
14 H 0.079 0.921
15 C -0.197 4.197
16 N -0.570 5.570
17 Si 0.786 3.214
18 H -0.191 1.191
19 H -0.208 1.208
20 H -0.193 1.193
21 S 0.511 5.489
22 C -0.447 4.447
23 C 0.386 3.614
24 N -0.393 5.393
25 O -0.439 6.439
26 H 0.105 0.895
27 H 0.110 0.890
28 H 0.100 0.900
29 H 0.138 0.862
30 H 0.142 0.858
31 H 0.262 0.738
32 H 0.170 0.830
33 H 0.163 0.837
34 H 0.083 0.917
35 H 0.089 0.911
36 H 0.024 0.976
37 H 0.019 0.981
38 H 0.073 0.927
39 H 0.243 0.757
40 H 0.254 0.746
Dipole moment (debyes) X Y Z Total
from point charges -6.947 -28.168 -0.630 29.019
hybrid contribution -0.872 1.026 -0.033 1.347
sum -7.819 -27.142 -0.662 28.254
Atomic orbital electron populations
1.20652 0.85574 1.04401 1.04059 1.20916 0.99327 0.85256 0.94837
1.66118 1.04810 1.31857 1.16623 1.27340 0.94046 0.99720 1.02339
1.20195 0.96898 0.94436 0.83495 1.55450 1.49969 1.67681 1.13906
1.04138 0.73017 0.76090 0.73530 1.93558 1.86249 1.87348 1.30595
1.93546 1.53260 1.73726 1.76269 1.30521 1.09329 1.18631 1.15686
1.21318 0.95729 0.96003 1.01578 1.18968 0.95660 0.91061 0.95163
1.21732 1.04598 0.97645 1.35012 0.92058 1.25936 0.98572 1.00394
0.94775 1.70062 1.29936 1.19504 1.37464 0.85548 0.79365 0.77700
0.78748 1.19134 1.20825 1.19335 1.83632 1.01900 1.00237 1.63082
1.25675 0.98209 0.99009 1.21843 1.16717 0.85782 0.83454 0.75436
1.43542 1.10437 1.08988 1.76337 1.90835 1.15751 1.85550 1.51783
0.89547 0.89032 0.90046 0.86238 0.85786 0.73834 0.82985 0.83663
0.91657 0.91054 0.97636 0.98094 0.92702 0.75726 0.74586
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -1.54 9.69 71.24 0.69 -0.85 16
2 C 0.14 2.60 6.79 42.10 0.29 2.88 16
3 N -0.48 -9.28 10.50 -178.28 -1.87 -11.15 16
4 C 0.04 0.65 6.78 88.46 0.60 1.25 16
5 C 0.18 2.52 6.71 85.63 0.57 3.10 16
6 N -1.11 -18.72 5.88 -190.79 -1.12 -19.84 16
7 S 2.64 64.13 5.46 -56.49 -0.31 63.82 16
8 O -0.99 -30.91 18.08 -127.65 -2.31 -33.21 16
9 O -0.98 -28.08 17.48 -127.65 -2.23 -30.32 16
10 C -0.61 -16.20 6.08 71.98 0.44 -15.76 16
11 C -0.11 -4.06 5.16 30.60 0.16 -3.91 16
12 C 0.03 1.48 4.97 29.85 0.15 1.63 16
13 C -0.55 -30.71 9.11 25.60 0.23 -30.48 16
14 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16
15 C 0.00 0.08 5.46 84.66 0.46 0.54 16
16 N -0.93 -55.18 13.29 21.45 0.28 -54.90 16
17 Si 0.96 43.60 29.54 68.60 2.03 45.63 16
18 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16
19 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16
20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16
21 S 0.25 2.89 22.31 -56.49 -1.26 1.63 16
22 C -0.32 -5.18 6.48 23.88 0.15 -5.03 16
23 C 0.60 9.55 8.05 86.45 0.70 10.25 16
24 N -0.83 -5.97 8.87 -176.39 -1.56 -7.54 16
25 O -0.56 -12.58 15.11 -4.31 -0.07 -12.65 16
26 H 0.09 1.40 8.14 -2.39 -0.02 1.39 16
27 H 0.09 1.75 6.01 -2.39 -0.01 1.74 16
28 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16
29 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16
30 H 0.12 1.37 7.68 -2.39 -0.02 1.35 16
31 H 0.43 6.41 8.61 -96.74 -0.83 5.58 16
32 H 0.15 3.28 8.14 -2.39 -0.02 3.26 16
33 H 0.15 3.48 8.14 -2.39 -0.02 3.46 16
34 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16
35 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16
36 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16
37 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16
38 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16
39 H 0.41 1.09 8.01 -92.71 -0.74 0.35 16
40 H 0.42 1.70 8.93 -92.71 -0.83 0.87 16
Total: -1.00 -80.20 371.68 -5.26 -85.46
By element:
Atomic # 1 Polarization: 10.71 SS G_CDS: -1.28 Total: 9.43 kcal
Atomic # 6 Polarization: -40.80 SS G_CDS: 4.44 Total: -36.36 kcal
Atomic # 7 Polarization: -89.16 SS G_CDS: -4.27 Total: -93.43 kcal
Atomic # 8 Polarization: -71.57 SS G_CDS: -4.60 Total: -76.17 kcal
Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal
Atomic # 16 Polarization: 67.02 SS G_CDS: -1.57 Total: 65.45 kcal
Total: -80.20 -5.26 -85.46 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001213630617.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -27.850 kcal
(2) G-P(sol) polarization free energy of solvation -80.202 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.052 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.262 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.464 kcal
(6) G-S(sol) free energy of system = (1) + (5) -113.313 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds