Wall clock time and date at job start Wed Apr 1 2020 04:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30940 * 122.90349 * 2 1 4 4 C 1.29428 * 117.36340 * 180.02562 * 3 2 1 5 5 C 1.50703 * 124.80656 * 179.97438 * 4 3 2 6 6 N 1.46498 * 109.47212 * 89.99411 * 5 4 3 7 7 S 1.65602 * 119.99612 * 164.72359 * 6 5 4 8 8 O 1.42109 * 104.27511 * 181.34803 * 7 6 5 9 9 O 1.42098 * 104.28120 * 309.20801 * 7 6 5 10 10 C 1.81394 * 104.44973 * 65.28269 * 7 6 5 11 11 C 1.53003 * 109.47387 * 179.97438 * 10 7 6 12 12 C 1.53002 * 109.47130 * 179.97438 * 11 10 7 13 13 C 1.50692 * 109.47012 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00112 * 0.02562 * 13 12 11 15 15 C 1.37882 * 120.00231 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99857 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00269 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47241 * 60.00170 * 17 15 13 19 19 H 1.48497 * 109.47563 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47390 * 300.00100 * 17 15 13 21 21 S 1.70954 * 110.39077 * 0.24261 * 4 3 2 22 22 C 1.35663 * 122.90340 * 179.97438 * 2 1 3 23 23 C 1.46685 * 126.13258 * 0.04512 * 22 2 1 24 24 N 1.34772 * 119.99955 * 179.97438 * 23 22 2 25 25 O 1.21688 * 119.99708 * 359.97438 * 23 22 2 26 26 H 1.09002 * 109.46733 * 90.02289 * 1 2 3 27 27 H 1.09001 * 109.47223 * 210.02458 * 1 2 3 28 28 H 1.08995 * 109.47017 * 330.02295 * 1 2 3 29 29 H 1.08996 * 109.47013 * 329.99717 * 5 4 3 30 30 H 1.08999 * 109.47128 * 209.99930 * 5 4 3 31 31 H 0.97001 * 120.00384 * 345.00836 * 6 5 4 32 32 H 1.09009 * 109.47044 * 299.99503 * 10 7 6 33 33 H 1.09001 * 109.47747 * 59.99183 * 10 7 6 34 34 H 1.09000 * 109.46375 * 299.99213 * 11 10 7 35 35 H 1.08993 * 109.47045 * 59.99537 * 11 10 7 36 36 H 1.09003 * 109.47270 * 300.00013 * 12 11 10 37 37 H 1.09000 * 109.46896 * 60.00012 * 12 11 10 38 38 H 0.96993 * 120.00008 * 179.97438 * 16 15 13 39 39 H 0.96994 * 120.00157 * 359.97438 * 24 23 22 40 40 H 0.97000 * 119.99540 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2183 1.0994 0.0000 4 6 3.5066 0.9744 -0.0005 5 6 4.4822 2.1230 -0.0012 6 7 4.7989 2.4955 1.3798 7 16 6.1101 3.4555 1.6985 8 8 6.1205 3.5758 3.1144 9 8 7.1812 2.8259 1.0089 10 6 5.7044 5.0465 0.9275 11 6 6.8527 6.0315 1.1559 12 6 6.5107 7.3733 0.5051 13 6 7.6413 8.3436 0.7305 14 1 8.5166 8.0341 1.2825 15 6 7.5590 9.6263 0.2313 16 7 6.4935 10.0030 -0.4412 17 14 8.9609 10.8288 0.5102 18 1 10.2048 10.2879 -0.0942 19 1 8.6296 12.1308 -0.1224 20 1 9.1633 11.0238 1.9684 21 16 3.9447 -0.6780 -0.0079 22 6 2.2440 -1.1390 0.0005 23 6 1.7192 -2.5088 0.0002 24 7 2.5680 -3.5556 0.0002 25 8 0.5174 -2.6998 -0.0001 26 1 -0.3633 -0.0004 -1.0277 27 1 -0.3634 -0.8898 0.5142 28 1 -0.3633 0.8902 0.5135 29 1 4.0390 2.9759 -0.5150 30 1 5.3955 1.8236 -0.5153 31 1 4.2429 2.1766 2.1079 32 1 5.5550 4.9040 -0.1428 33 1 4.7917 5.4435 1.3720 34 1 7.0015 6.1740 2.2263 35 1 7.7655 5.6348 0.7117 36 1 6.3619 7.2305 -0.5653 37 1 5.5977 7.7702 0.9490 38 1 6.4354 10.9054 -0.7920 39 1 3.5259 -3.4033 0.0001 40 1 2.2209 -4.4614 0.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213630617.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:52 Heat of formation + Delta-G solvation = -113.313285 kcal Electronic energy + Delta-G solvation = -24755.968908 eV Core-core repulsion = 20822.906034 eV Total energy + Delta-G solvation = -3933.062874 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.081 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.52603 -40.09038 -38.23188 -37.10670 -36.64888 -36.43571 -34.89033 -34.14000 -32.86374 -29.63315 -29.39768 -28.64689 -25.60284 -24.00980 -23.42849 -22.40649 -20.67953 -20.45800 -19.47794 -18.76767 -18.61884 -18.29355 -17.65496 -17.21330 -17.13450 -16.63401 -16.47195 -16.29028 -15.74010 -15.50959 -15.29093 -15.08666 -14.63009 -14.47150 -14.28623 -13.99876 -13.62561 -13.50117 -13.42738 -13.21118 -13.14028 -13.06553 -12.92601 -12.71449 -12.63210 -12.43248 -12.15404 -11.70568 -11.46102 -11.36271 -11.15801 -10.92875 -10.90134 -10.64470 -10.55116 -10.51290 -9.93545 -8.20849 -6.31557 -1.09207 -0.71884 -0.00002 0.37806 1.17077 1.41658 1.43820 1.51716 1.77260 1.99923 2.33261 2.41162 2.69714 2.76630 3.12787 3.23501 3.52827 3.76003 3.77497 3.95631 4.00982 4.15751 4.37530 4.43175 4.56001 4.62544 4.70082 4.70794 4.84686 5.01463 5.10771 5.24180 5.48352 5.66494 5.74143 5.82079 5.86408 6.14848 6.21869 6.46864 6.84570 7.08725 7.37645 8.90234 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.025052 B = 0.001962 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.407367 B =14265.704192 C =14878.463235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.136 3.864 3 N -0.478 5.478 4 C 0.041 3.959 5 C 0.179 3.821 6 N -1.109 6.109 7 S 2.637 3.363 8 O -0.987 6.987 9 O -0.978 6.978 10 C -0.611 4.611 11 C -0.107 4.107 12 C 0.030 3.970 13 C -0.552 4.552 14 H 0.061 0.939 15 C 0.001 3.999 16 N -0.930 5.930 17 Si 0.962 3.038 18 H -0.266 1.266 19 H -0.283 1.283 20 H -0.268 1.268 21 S 0.253 5.747 22 C -0.323 4.323 23 C 0.602 3.398 24 N -0.828 5.828 25 O -0.559 6.559 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.120 0.880 30 H 0.124 0.876 31 H 0.426 0.574 32 H 0.152 0.848 33 H 0.145 0.855 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.005 0.995 37 H 0.001 0.999 38 H 0.264 0.736 39 H 0.412 0.588 40 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.817 -28.116 -0.858 29.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.003 4.003 3 N -0.194 5.194 4 C -0.234 4.234 5 C 0.050 3.950 6 N -0.870 5.870 7 S 2.732 3.268 8 O -0.978 6.978 9 O -0.968 6.968 10 C -0.742 4.742 11 C -0.146 4.146 12 C -0.009 4.009 13 C -0.590 4.590 14 H 0.079 0.921 15 C -0.197 4.197 16 N -0.570 5.570 17 Si 0.786 3.214 18 H -0.191 1.191 19 H -0.208 1.208 20 H -0.193 1.193 21 S 0.511 5.489 22 C -0.447 4.447 23 C 0.386 3.614 24 N -0.393 5.393 25 O -0.439 6.439 26 H 0.105 0.895 27 H 0.110 0.890 28 H 0.100 0.900 29 H 0.138 0.862 30 H 0.142 0.858 31 H 0.262 0.738 32 H 0.170 0.830 33 H 0.163 0.837 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.024 0.976 37 H 0.019 0.981 38 H 0.073 0.927 39 H 0.243 0.757 40 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -6.947 -28.168 -0.630 29.019 hybrid contribution -0.872 1.026 -0.033 1.347 sum -7.819 -27.142 -0.662 28.254 Atomic orbital electron populations 1.20652 0.85574 1.04401 1.04059 1.20916 0.99327 0.85256 0.94837 1.66118 1.04810 1.31857 1.16623 1.27340 0.94046 0.99720 1.02339 1.20195 0.96898 0.94436 0.83495 1.55450 1.49969 1.67681 1.13906 1.04138 0.73017 0.76090 0.73530 1.93558 1.86249 1.87348 1.30595 1.93546 1.53260 1.73726 1.76269 1.30521 1.09329 1.18631 1.15686 1.21318 0.95729 0.96003 1.01578 1.18968 0.95660 0.91061 0.95163 1.21732 1.04598 0.97645 1.35012 0.92058 1.25936 0.98572 1.00394 0.94775 1.70062 1.29936 1.19504 1.37464 0.85548 0.79365 0.77700 0.78748 1.19134 1.20825 1.19335 1.83632 1.01900 1.00237 1.63082 1.25675 0.98209 0.99009 1.21843 1.16717 0.85782 0.83454 0.75436 1.43542 1.10437 1.08988 1.76337 1.90835 1.15751 1.85550 1.51783 0.89547 0.89032 0.90046 0.86238 0.85786 0.73834 0.82985 0.83663 0.91657 0.91054 0.97636 0.98094 0.92702 0.75726 0.74586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.54 9.69 71.24 0.69 -0.85 16 2 C 0.14 2.60 6.79 42.10 0.29 2.88 16 3 N -0.48 -9.28 10.50 -178.28 -1.87 -11.15 16 4 C 0.04 0.65 6.78 88.46 0.60 1.25 16 5 C 0.18 2.52 6.71 85.63 0.57 3.10 16 6 N -1.11 -18.72 5.88 -190.79 -1.12 -19.84 16 7 S 2.64 64.13 5.46 -56.49 -0.31 63.82 16 8 O -0.99 -30.91 18.08 -127.65 -2.31 -33.21 16 9 O -0.98 -28.08 17.48 -127.65 -2.23 -30.32 16 10 C -0.61 -16.20 6.08 71.98 0.44 -15.76 16 11 C -0.11 -4.06 5.16 30.60 0.16 -3.91 16 12 C 0.03 1.48 4.97 29.85 0.15 1.63 16 13 C -0.55 -30.71 9.11 25.60 0.23 -30.48 16 14 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 15 C 0.00 0.08 5.46 84.66 0.46 0.54 16 16 N -0.93 -55.18 13.29 21.45 0.28 -54.90 16 17 Si 0.96 43.60 29.54 68.60 2.03 45.63 16 18 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 S 0.25 2.89 22.31 -56.49 -1.26 1.63 16 22 C -0.32 -5.18 6.48 23.88 0.15 -5.03 16 23 C 0.60 9.55 8.05 86.45 0.70 10.25 16 24 N -0.83 -5.97 8.87 -176.39 -1.56 -7.54 16 25 O -0.56 -12.58 15.11 -4.31 -0.07 -12.65 16 26 H 0.09 1.40 8.14 -2.39 -0.02 1.39 16 27 H 0.09 1.75 6.01 -2.39 -0.01 1.74 16 28 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.12 1.37 7.68 -2.39 -0.02 1.35 16 31 H 0.43 6.41 8.61 -96.74 -0.83 5.58 16 32 H 0.15 3.28 8.14 -2.39 -0.02 3.26 16 33 H 0.15 3.48 8.14 -2.39 -0.02 3.46 16 34 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 37 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 38 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 39 H 0.41 1.09 8.01 -92.71 -0.74 0.35 16 40 H 0.42 1.70 8.93 -92.71 -0.83 0.87 16 Total: -1.00 -80.20 371.68 -5.26 -85.46 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -1.28 Total: 9.43 kcal Atomic # 6 Polarization: -40.80 SS G_CDS: 4.44 Total: -36.36 kcal Atomic # 7 Polarization: -89.16 SS G_CDS: -4.27 Total: -93.43 kcal Atomic # 8 Polarization: -71.57 SS G_CDS: -4.60 Total: -76.17 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: 67.02 SS G_CDS: -1.57 Total: 65.45 kcal Total: -80.20 -5.26 -85.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213630617.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.850 kcal (2) G-P(sol) polarization free energy of solvation -80.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds