Wall clock time and date at job start Wed Apr 1 2020 04:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45202 * 109.46874 * 2 1 4 4 C 1.34231 * 116.99376 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00841 * 359.97438 * 4 3 2 6 6 C 1.50706 * 119.99623 * 179.97438 * 4 3 2 7 7 N 1.46495 * 109.47117 * 179.97438 * 6 4 3 8 8 C 1.46495 * 120.00459 * 274.99631 * 7 6 4 9 9 C 1.50698 * 109.47349 * 275.00290 * 8 7 6 10 10 H 1.07995 * 120.00245 * 359.97438 * 9 8 7 11 11 C 1.37876 * 119.99755 * 179.97438 * 9 8 7 12 12 N 1.31520 * 119.99788 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 120.00376 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.47104 * 89.99524 * 13 11 9 15 15 H 1.48500 * 109.47123 * 209.99579 * 13 11 9 16 16 H 1.48500 * 109.47102 * 329.99502 * 13 11 9 17 17 S 1.65607 * 119.99596 * 95.00274 * 7 6 4 18 18 O 1.42094 * 106.40093 * 156.46151 * 17 7 6 19 19 O 1.42099 * 106.40312 * 23.53640 * 17 7 6 20 20 C 1.76201 * 107.21554 * 269.99782 * 17 7 6 21 21 C 1.33386 * 125.20371 * 89.99958 * 20 17 7 22 22 C 1.38432 * 114.92087 * 179.97438 * 21 20 17 23 23 C 1.33386 * 114.91918 * 0.02562 * 22 21 20 24 24 C 1.50703 * 125.20043 * 179.97438 * 23 22 21 25 25 S 1.75882 * 109.59433 * 0.24350 * 23 22 21 26 26 H 1.09001 * 109.47250 * 300.00040 * 1 2 3 27 27 H 1.08999 * 109.47438 * 60.00500 * 1 2 3 28 28 H 1.09005 * 109.46889 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47250 * 239.99960 * 2 1 3 30 30 H 1.08997 * 109.47168 * 119.99960 * 2 1 3 31 31 H 1.09003 * 109.46802 * 59.99372 * 6 4 3 32 32 H 1.09002 * 109.46920 * 299.99598 * 6 4 3 33 33 H 1.09006 * 109.46398 * 35.00350 * 8 7 6 34 34 H 1.09002 * 109.47296 * 154.99838 * 8 7 6 35 35 H 0.96996 * 120.00176 * 179.97438 * 12 11 9 36 36 H 1.08001 * 122.54102 * 359.97438 * 21 20 17 37 37 H 1.07997 * 122.53785 * 180.02562 * 22 21 20 38 38 H 1.09002 * 109.47152 * 90.00037 * 24 23 22 39 39 H 1.09001 * 109.46980 * 330.00137 * 24 23 22 40 40 H 1.09004 * 109.47113 * 210.00118 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9207 2.9374 -0.0012 7 7 5.3837 2.8607 -0.0010 8 6 6.1094 2.7127 1.2629 9 6 6.3246 4.0702 1.8806 10 1 5.9579 4.9549 1.3815 11 6 6.9897 4.1828 3.0831 12 7 7.1780 5.3676 3.6220 13 14 7.6247 2.6526 3.9462 14 1 9.0089 2.3661 3.4911 15 1 7.6225 2.8755 5.4143 16 1 6.7475 1.4999 3.6192 17 16 6.2171 2.9417 -1.4298 18 8 7.5253 3.3921 -1.1063 19 8 5.3694 3.6136 -2.3513 20 6 6.3918 1.2927 -2.0257 21 6 5.5280 0.6696 -2.8287 22 6 5.8765 -0.6268 -3.1667 23 6 7.0231 -1.0565 -2.6377 24 6 7.6196 -2.4239 -2.8512 25 16 7.7284 0.2140 -1.6469 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.5850 3.4698 0.8888 32 1 3.5845 3.4693 -0.8912 33 1 5.5286 2.0911 1.9445 34 1 7.0744 2.2419 1.0748 35 1 7.6456 5.4469 4.4681 36 1 4.6250 1.1408 -3.1879 37 1 5.2663 -1.2434 -3.8099 38 1 8.2734 -2.4030 -3.7232 39 1 6.8208 -3.1475 -3.0133 40 1 8.1962 -2.7102 -1.9716 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001260683894.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:05 Heat of formation + Delta-G solvation = -117.941297 kcal Electronic energy + Delta-G solvation = -27212.647523 eV Core-core repulsion = 23247.091213 eV Total energy + Delta-G solvation = -3965.556311 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.26790 -37.95065 -36.88353 -36.72689 -35.49185 -35.30817 -32.51585 -32.16988 -31.81328 -29.06384 -27.07846 -26.44785 -23.34756 -23.21695 -22.13311 -21.04047 -20.12359 -18.29257 -17.84595 -17.49282 -17.19957 -16.81071 -16.42194 -16.13272 -15.86900 -15.38110 -14.43473 -14.31117 -14.21772 -14.14132 -13.80666 -13.30968 -13.27199 -12.92008 -12.69465 -12.60995 -12.48559 -12.32227 -12.10063 -12.03273 -11.78534 -11.70861 -11.60909 -11.47648 -11.34155 -11.03069 -10.98493 -10.70414 -10.62582 -10.50778 -10.38592 -10.17655 -9.61512 -8.96802 -8.62451 -8.42785 -8.38367 -6.12042 -4.12503 0.52637 0.86920 1.56913 1.90039 2.40626 2.53705 2.68336 3.27009 3.33099 3.35571 3.51710 4.16065 4.36627 4.61482 4.80253 4.82564 4.85179 4.94212 5.03330 5.12950 5.16823 5.23587 5.25490 5.29188 5.42413 5.54054 5.63477 5.65001 5.67612 5.82959 5.91589 6.01052 6.02627 6.37310 6.53198 6.68625 6.89469 7.08242 7.50635 7.94933 8.42365 8.91371 9.46623 11.00826 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.008116 B = 0.005821 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3449.156957 B = 4808.703979 C = 6416.493071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.359 6.359 4 C 0.435 3.565 5 O -0.492 6.492 6 C 0.130 3.870 7 N -0.955 5.955 8 C 0.227 3.773 9 C -0.536 4.536 10 H 0.083 0.917 11 C 0.079 3.921 12 N -0.891 5.891 13 Si 0.864 3.136 14 H -0.270 1.270 15 H -0.283 1.283 16 H -0.263 1.263 17 S 2.708 3.292 18 O -0.928 6.928 19 O -0.964 6.964 20 C -0.776 4.776 21 C 0.006 3.994 22 C -0.166 4.166 23 C -0.154 4.154 24 C -0.087 4.087 25 S 0.221 5.779 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.138 0.862 32 H 0.127 0.873 33 H 0.038 0.962 34 H 0.034 0.966 35 H 0.266 0.734 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.368 -15.302 -11.470 20.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.276 6.276 4 C 0.275 3.725 5 O -0.378 6.378 6 C 0.002 3.998 7 N -0.792 5.792 8 C 0.105 3.895 9 C -0.575 4.575 10 H 0.101 0.899 11 C -0.125 4.125 12 N -0.528 5.528 13 Si 0.690 3.310 14 H -0.195 1.195 15 H -0.208 1.208 16 H -0.188 1.188 17 S 2.794 3.206 18 O -0.918 6.918 19 O -0.955 6.955 20 C -0.976 4.976 21 C -0.028 4.028 22 C -0.197 4.197 23 C -0.274 4.274 24 C -0.146 4.146 25 S 0.488 5.512 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.156 0.844 32 H 0.145 0.855 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.076 0.924 36 H 0.162 0.838 37 H 0.159 0.841 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.410 -14.685 -10.795 19.320 hybrid contribution -1.052 -1.887 -0.167 2.167 sum -7.462 -16.572 -10.962 21.224 Atomic orbital electron populations 1.21796 0.92857 1.02652 1.03568 1.22951 0.95141 0.80820 1.02373 1.86523 1.24884 1.31881 1.84344 1.24990 0.80530 0.94258 0.72749 1.90677 1.60153 1.42805 1.44202 1.20817 0.80999 0.89683 1.08346 1.57161 1.11981 1.87029 1.23013 1.19582 0.91279 0.98635 0.80032 1.21317 1.37907 0.92237 1.06023 0.89920 1.24792 0.95057 0.95790 0.96829 1.69879 1.41570 1.22525 1.18875 0.87030 0.80529 0.84078 0.79325 1.19535 1.20818 1.18779 1.01737 0.73993 0.72639 0.72235 1.93638 1.37115 1.77980 1.83070 1.93518 1.68344 1.70861 1.62735 1.36092 1.09586 1.31059 1.20839 1.19752 0.97404 0.93309 0.92374 1.20154 0.97891 0.96576 1.05030 1.25082 0.99620 1.00810 1.01854 1.20426 1.01105 0.90259 1.02772 1.84190 1.20293 1.01406 1.45327 0.91404 0.91498 0.90588 0.91546 0.91407 0.84435 0.85490 0.94439 0.94778 0.92400 0.83828 0.84133 0.90244 0.90303 0.90906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.29 37.16 0.38 -0.82 16 2 C 0.06 0.68 6.19 37.16 0.23 0.91 16 3 O -0.36 -4.91 10.22 -39.26 -0.40 -5.31 16 4 C 0.43 6.91 8.02 36.01 0.29 7.20 16 5 O -0.49 -8.79 15.62 -18.75 -0.29 -9.09 16 6 C 0.13 2.15 6.27 -5.19 -0.03 2.11 16 7 N -0.96 -19.41 2.26 -116.95 -0.26 -19.67 16 8 C 0.23 5.35 4.15 -5.20 -0.02 5.33 16 9 C -0.54 -14.77 9.94 -34.44 -0.34 -15.11 16 10 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 11 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 12 N -0.89 -26.76 13.96 55.43 0.77 -25.99 16 13 Si 0.86 21.00 27.47 -169.99 -4.67 16.33 16 14 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.26 -6.08 6.54 56.52 0.37 -5.71 16 17 S 2.71 54.90 5.79 -107.50 -0.62 54.28 16 18 O -0.93 -21.96 16.88 -57.17 -0.97 -22.93 16 19 O -0.96 -19.36 16.35 -57.17 -0.93 -20.30 16 20 C -0.78 -13.52 6.23 29.04 0.18 -13.34 16 21 C 0.01 0.09 9.63 -41.21 -0.40 -0.30 16 22 C -0.17 -2.11 10.05 -41.21 -0.41 -2.53 16 23 C -0.15 -1.96 6.51 -36.00 -0.23 -2.19 16 24 C -0.09 -0.76 10.38 36.01 0.37 -0.39 16 25 S 0.22 3.53 23.21 -107.50 -2.49 1.04 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.71 8.13 -51.93 -0.42 0.28 16 30 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 31 H 0.14 2.13 8.11 -51.93 -0.42 1.71 16 32 H 0.13 1.81 6.92 -51.93 -0.36 1.46 16 33 H 0.04 0.86 7.17 -51.93 -0.37 0.49 16 34 H 0.03 0.82 7.04 -51.93 -0.37 0.46 16 35 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.14 1.91 8.05 -52.49 -0.42 1.49 16 37 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 372.47 15.07 5.61 5.61 Total: -1.00 -34.46 372.47 -9.68 -44.14 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -5.33 Total: -1.13 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: -0.08 Total: -16.99 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 0.51 Total: -45.66 kcal Atomic # 8 Polarization: -55.03 SS G_CDS: -2.59 Total: -57.62 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal Atomic # 16 Polarization: 58.44 SS G_CDS: -3.12 Total: 55.32 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.46 -9.68 -44.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260683894.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.805 kcal (2) G-P(sol) polarization free energy of solvation -34.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds