Wall clock time and date at job start Wed Apr 1 2020 04:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45202 * 109.46874 * 2 1 4 4 C 1.34231 * 116.99376 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00841 * 359.97438 * 4 3 2 6 6 C 1.50706 * 119.99623 * 179.97438 * 4 3 2 7 7 N 1.46495 * 109.47117 * 179.97438 * 6 4 3 8 8 C 1.46495 * 120.00459 * 274.99631 * 7 6 4 9 9 C 1.50698 * 109.47349 * 275.00290 * 8 7 6 10 10 H 1.07995 * 120.00245 * 359.97438 * 9 8 7 11 11 C 1.37876 * 119.99755 * 179.97438 * 9 8 7 12 12 N 1.31520 * 119.99788 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 120.00376 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.47104 * 89.99524 * 13 11 9 15 15 H 1.48500 * 109.47123 * 209.99579 * 13 11 9 16 16 H 1.48500 * 109.47102 * 329.99502 * 13 11 9 17 17 S 1.65607 * 119.99596 * 95.00274 * 7 6 4 18 18 O 1.42094 * 106.40093 * 156.46151 * 17 7 6 19 19 O 1.42099 * 106.40312 * 23.53640 * 17 7 6 20 20 C 1.76201 * 107.21554 * 269.99782 * 17 7 6 21 21 C 1.33386 * 125.20371 * 89.99958 * 20 17 7 22 22 C 1.38432 * 114.92087 * 179.97438 * 21 20 17 23 23 C 1.33386 * 114.91918 * 0.02562 * 22 21 20 24 24 C 1.50703 * 125.20043 * 179.97438 * 23 22 21 25 25 S 1.75882 * 109.59433 * 0.24350 * 23 22 21 26 26 H 1.09001 * 109.47250 * 300.00040 * 1 2 3 27 27 H 1.08999 * 109.47438 * 60.00500 * 1 2 3 28 28 H 1.09005 * 109.46889 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47250 * 239.99960 * 2 1 3 30 30 H 1.08997 * 109.47168 * 119.99960 * 2 1 3 31 31 H 1.09003 * 109.46802 * 59.99372 * 6 4 3 32 32 H 1.09002 * 109.46920 * 299.99598 * 6 4 3 33 33 H 1.09006 * 109.46398 * 35.00350 * 8 7 6 34 34 H 1.09002 * 109.47296 * 154.99838 * 8 7 6 35 35 H 0.96996 * 120.00176 * 179.97438 * 12 11 9 36 36 H 1.08001 * 122.54102 * 359.97438 * 21 20 17 37 37 H 1.07997 * 122.53785 * 180.02562 * 22 21 20 38 38 H 1.09002 * 109.47152 * 90.00037 * 24 23 22 39 39 H 1.09001 * 109.46980 * 330.00137 * 24 23 22 40 40 H 1.09004 * 109.47113 * 210.00118 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9207 2.9374 -0.0012 7 7 5.3837 2.8607 -0.0010 8 6 6.1094 2.7127 1.2629 9 6 6.3246 4.0702 1.8806 10 1 5.9579 4.9549 1.3815 11 6 6.9897 4.1828 3.0831 12 7 7.1780 5.3676 3.6220 13 14 7.6247 2.6526 3.9462 14 1 9.0089 2.3661 3.4911 15 1 7.6225 2.8755 5.4143 16 1 6.7475 1.4999 3.6192 17 16 6.2171 2.9417 -1.4298 18 8 7.5253 3.3921 -1.1063 19 8 5.3694 3.6136 -2.3513 20 6 6.3918 1.2927 -2.0257 21 6 5.5280 0.6696 -2.8287 22 6 5.8765 -0.6268 -3.1667 23 6 7.0231 -1.0565 -2.6377 24 6 7.6196 -2.4239 -2.8512 25 16 7.7284 0.2140 -1.6469 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.5850 3.4698 0.8888 32 1 3.5845 3.4693 -0.8912 33 1 5.5286 2.0911 1.9445 34 1 7.0744 2.2419 1.0748 35 1 7.6456 5.4469 4.4681 36 1 4.6250 1.1408 -3.1879 37 1 5.2663 -1.2434 -3.8099 38 1 8.2734 -2.4030 -3.7232 39 1 6.8208 -3.1475 -3.0133 40 1 8.1962 -2.7102 -1.9716 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001260683894.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:04 Heat of formation + Delta-G solvation = -141.316094 kcal Electronic energy + Delta-G solvation = -27213.661131 eV Core-core repulsion = 23247.091213 eV Total energy + Delta-G solvation = -3966.569918 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.47244 -39.05934 -38.37315 -38.13468 -37.08322 -36.87841 -34.58983 -33.11767 -32.67149 -30.76970 -28.19246 -27.97109 -24.45043 -24.31032 -23.81076 -22.25516 -21.33379 -19.74263 -19.29987 -18.98695 -18.58863 -18.53155 -17.70388 -17.43383 -17.10973 -16.80976 -16.22078 -15.61774 -15.48909 -15.20374 -15.00532 -14.57129 -14.43097 -14.15651 -14.11721 -13.69062 -13.63396 -13.53911 -13.37373 -13.29251 -13.26546 -13.12149 -13.04797 -12.85740 -12.61242 -12.46302 -12.45229 -12.36765 -12.07413 -11.81701 -11.74806 -11.60299 -11.46498 -10.80104 -10.17072 -9.95004 -9.61177 -8.30776 -6.36034 -0.82539 -0.44738 0.38219 0.79750 1.16357 1.33050 1.36592 1.40921 1.45057 1.56069 2.07222 2.32156 2.64993 3.02239 3.31513 3.69622 3.73257 3.77632 4.05761 4.13754 4.18307 4.28258 4.33816 4.39345 4.51687 4.54839 4.67722 4.78729 4.82770 4.86283 4.97147 4.99728 5.05164 5.08550 5.17181 5.35958 5.39755 5.43997 5.48060 6.25249 6.67366 6.75071 7.26716 8.85657 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.008116 B = 0.005821 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3449.156957 B = 4808.703979 C = 6416.493071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.053 3.947 3 O -0.358 6.358 4 C 0.444 3.556 5 O -0.512 6.512 6 C 0.120 3.880 7 N -0.964 5.964 8 C 0.240 3.760 9 C -0.540 4.540 10 H 0.047 0.953 11 C 0.021 3.979 12 N -0.938 5.938 13 Si 0.925 3.075 14 H -0.268 1.268 15 H -0.273 1.273 16 H -0.241 1.241 17 S 2.714 3.286 18 O -0.976 6.976 19 O -0.973 6.973 20 C -0.803 4.803 21 C 0.020 3.980 22 C -0.173 4.173 23 C -0.124 4.124 24 C -0.090 4.090 25 S 0.167 5.833 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.100 0.900 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.142 0.858 32 H 0.146 0.854 33 H 0.048 0.952 34 H 0.030 0.970 35 H 0.269 0.731 36 H 0.158 0.842 37 H 0.181 0.819 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.846 -19.207 -12.699 25.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.021 4.021 3 O -0.274 6.274 4 C 0.285 3.715 5 O -0.400 6.400 6 C -0.007 4.007 7 N -0.800 5.800 8 C 0.116 3.884 9 C -0.579 4.579 10 H 0.065 0.935 11 C -0.178 4.178 12 N -0.578 5.578 13 Si 0.747 3.253 14 H -0.193 1.193 15 H -0.198 1.198 16 H -0.165 1.165 17 S 2.805 3.195 18 O -0.966 6.966 19 O -0.963 6.963 20 C -1.007 5.007 21 C -0.015 4.015 22 C -0.203 4.203 23 C -0.244 4.244 24 C -0.148 4.148 25 S 0.432 5.568 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.118 0.882 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.160 0.840 32 H 0.164 0.836 33 H 0.066 0.934 34 H 0.047 0.953 35 H 0.078 0.922 36 H 0.176 0.824 37 H 0.198 0.802 38 H 0.118 0.882 39 H 0.123 0.877 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.944 -18.545 -12.024 23.486 hybrid contribution -0.703 -0.744 0.054 1.025 sum -8.647 -19.289 -11.970 24.292 Atomic orbital electron populations 1.21822 0.90354 1.04304 1.03755 1.23298 0.97063 0.79228 1.02503 1.86513 1.23294 1.33842 1.83748 1.24579 0.81212 0.93386 0.72364 1.90664 1.60800 1.43186 1.45310 1.21033 0.79130 0.91010 1.09569 1.56986 1.13517 1.87720 1.21821 1.19223 0.91696 0.96093 0.81358 1.21575 1.37219 0.93124 1.05985 0.93515 1.25674 0.95371 0.99019 0.97771 1.70020 1.43050 1.25001 1.19686 0.86055 0.80155 0.80679 0.78387 1.19317 1.19817 1.16464 1.01027 0.72905 0.73572 0.72007 1.93573 1.39320 1.79946 1.83784 1.93489 1.68160 1.72106 1.62574 1.35394 1.11719 1.29807 1.23758 1.20178 0.96883 0.94126 0.90336 1.20522 0.98343 0.95884 1.05536 1.25608 0.98705 1.01028 0.99031 1.20663 1.02268 0.88018 1.03893 1.84351 1.21259 1.03447 1.47722 0.91543 0.90989 0.88166 0.90908 0.91853 0.83997 0.83619 0.93413 0.95256 0.92175 0.82436 0.80169 0.88168 0.87704 0.90399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 10.29 71.98 0.74 -1.15 16 2 C 0.05 1.04 6.19 71.98 0.45 1.48 16 3 O -0.36 -9.16 10.22 -51.43 -0.53 -9.69 16 4 C 0.44 13.62 8.02 71.24 0.57 14.19 16 5 O -0.51 -17.59 15.62 21.97 0.34 -17.24 16 6 C 0.12 3.96 6.27 85.64 0.54 4.49 16 7 N -0.96 -39.94 2.26 -523.91 -1.18 -41.13 16 8 C 0.24 11.51 4.15 85.63 0.36 11.87 16 9 C -0.54 -30.89 9.94 25.60 0.25 -30.64 16 10 H 0.05 2.93 8.06 -2.91 -0.02 2.90 16 11 C 0.02 1.21 5.47 84.65 0.46 1.67 16 12 N -0.94 -58.31 13.96 21.45 0.30 -58.01 16 13 Si 0.92 43.54 27.47 68.60 1.88 45.43 16 14 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 15 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 16 H -0.24 -10.42 6.54 99.48 0.65 -9.77 16 17 S 2.71 112.95 5.79 -56.49 -0.33 112.63 16 18 O -0.98 -48.58 16.88 -128.00 -2.16 -50.74 16 19 O -0.97 -39.72 16.35 -128.00 -2.09 -41.81 16 20 C -0.80 -27.60 6.23 66.72 0.42 -27.18 16 21 C 0.02 0.56 9.63 21.22 0.20 0.77 16 22 C -0.17 -3.76 10.05 21.22 0.21 -3.55 16 23 C -0.12 -2.75 6.51 24.59 0.16 -2.59 16 24 C -0.09 -1.18 10.38 71.24 0.74 -0.44 16 25 S 0.17 5.22 23.21 -56.49 -1.31 3.91 16 26 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.07 1.35 8.13 -2.39 -0.02 1.33 16 30 H 0.06 1.31 8.13 -2.39 -0.02 1.29 16 31 H 0.14 4.48 8.11 -2.39 -0.02 4.46 16 32 H 0.15 4.16 6.92 -2.39 -0.02 4.14 16 33 H 0.05 2.18 7.17 -2.38 -0.02 2.16 16 34 H 0.03 1.44 7.04 -2.39 -0.02 1.42 16 35 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 36 H 0.16 3.81 8.05 -2.91 -0.02 3.79 16 37 H 0.18 2.50 8.06 -2.91 -0.02 2.47 16 38 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 Total: -1.00 -77.73 372.47 1.02 -76.71 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 1.00 Total: 11.02 kcal Atomic # 6 Polarization: -36.18 SS G_CDS: 5.10 Total: -31.08 kcal Atomic # 7 Polarization: -98.25 SS G_CDS: -0.88 Total: -99.13 kcal Atomic # 8 Polarization: -115.04 SS G_CDS: -4.44 Total: -119.48 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.88 Total: 45.43 kcal Atomic # 16 Polarization: 118.18 SS G_CDS: -1.64 Total: 116.54 kcal Total: -77.73 1.02 -76.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260683894.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.610 kcal (2) G-P(sol) polarization free energy of solvation -77.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds