Wall clock time and date at job start Wed Apr 1 2020 05:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47106 * 2 1 4 4 N 1.46496 * 109.47124 * 179.97438 * 3 2 1 5 5 C 1.46498 * 120.00050 * 274.99771 * 4 3 2 6 6 C 1.50702 * 109.47400 * 275.00175 * 5 4 3 7 7 H 1.08003 * 119.99598 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00258 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00042 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00048 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46743 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47353 * 120.00056 * 10 8 6 13 13 H 1.48497 * 109.46695 * 240.00135 * 10 8 6 14 14 S 1.65599 * 119.99942 * 95.00167 * 4 3 2 15 15 O 1.42105 * 106.40031 * 156.45942 * 14 4 3 16 16 O 1.42095 * 106.40550 * 23.53728 * 14 4 3 17 17 C 1.76198 * 107.21691 * 269.99739 * 14 4 3 18 18 C 1.33444 * 125.97104 * 89.98197 * 17 14 4 19 19 N 1.31991 * 114.57218 * 179.76550 * 18 17 14 20 20 C 1.29626 * 116.91149 * 0.52021 * 19 18 17 21 21 N 1.39004 * 124.93803 * 179.76952 * 20 19 18 22 22 C 1.34777 * 120.00271 * 359.69858 * 21 20 19 23 23 C 1.50702 * 119.99928 * 180.27567 * 22 21 20 24 24 O 1.21283 * 119.99750 * 359.97438 * 22 21 20 25 25 S 1.70960 * 110.11365 * 359.50480 * 20 19 18 26 26 H 1.08993 * 109.46987 * 60.00184 * 1 2 3 27 27 H 1.09002 * 109.46965 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46951 * 299.99774 * 1 2 3 29 29 H 1.09000 * 109.47434 * 240.00006 * 2 1 3 30 30 H 1.09000 * 109.47336 * 119.99792 * 2 1 3 31 31 H 1.09000 * 109.46969 * 59.99722 * 3 2 1 32 32 H 1.09000 * 109.46853 * 300.00088 * 3 2 1 33 33 H 1.08998 * 109.47107 * 35.00132 * 5 4 3 34 34 H 1.08999 * 109.47307 * 154.99901 * 5 4 3 35 35 H 0.97002 * 120.00191 * 180.02562 * 9 8 6 36 36 H 1.07999 * 122.71087 * 0.02562 * 18 17 14 37 37 H 0.97000 * 119.99412 * 179.69044 * 21 20 19 38 38 H 1.09001 * 109.47107 * 179.72352 * 23 22 21 39 39 H 1.09004 * 109.46965 * 299.72211 * 23 22 21 40 40 H 1.09000 * 109.47154 * 59.71645 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2370 1.3322 1.2648 6 6 4.3806 2.6990 1.8831 7 1 3.9676 3.5633 1.3844 8 6 5.0384 2.8459 3.0859 9 7 5.5401 1.7932 3.6939 10 14 5.2158 4.5401 3.8526 11 1 4.5688 5.5499 2.9769 12 1 4.5637 4.5505 5.1867 13 1 6.6566 4.8666 4.0034 14 16 4.3336 1.5673 -1.4277 15 8 5.6164 2.0856 -1.1035 16 8 3.4524 2.1942 -2.3494 17 6 4.5947 -0.0700 -2.0240 18 6 3.7756 -0.7515 -2.8273 19 7 4.1955 -1.9634 -3.1392 20 6 5.3255 -2.3421 -2.6292 21 7 5.9196 -3.5806 -2.8418 22 6 5.3121 -4.4940 -3.6249 23 6 5.9533 -5.8390 -3.8503 24 8 4.2468 -4.2353 -4.1437 25 16 5.9821 -1.0938 -1.6630 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.6893 0.6810 1.9461 34 1 5.2253 0.9126 1.0770 35 1 6.0025 1.8965 4.5403 36 1 2.8463 -0.3429 -3.1960 37 1 6.7715 -3.7875 -2.4266 38 1 5.3182 -6.4397 -4.5014 39 1 6.9282 -5.7029 -4.3186 40 1 6.0774 -6.3472 -2.8941 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001260704752.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:55 Heat of formation + Delta-G solvation = -58.317400 kcal Electronic energy + Delta-G solvation = -26519.952113 eV Core-core repulsion = 22589.274039 eV Total energy + Delta-G solvation = -3930.678073 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.081 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.74184 -39.02047 -36.73814 -36.38367 -35.31657 -35.24659 -33.17517 -31.81714 -31.02569 -29.30790 -27.42482 -25.35227 -25.04063 -22.62851 -22.56104 -21.10505 -20.00224 -19.75981 -18.12158 -17.33306 -16.89325 -16.79497 -16.37396 -16.10415 -15.91906 -15.41750 -14.55130 -14.47339 -14.45106 -14.28612 -14.08933 -13.68332 -13.32462 -13.11335 -12.76445 -12.49679 -12.20737 -11.87516 -11.75508 -11.64035 -11.52258 -11.37629 -11.33815 -11.27329 -11.16234 -10.99518 -10.78407 -10.58751 -10.49881 -10.30132 -9.98886 -9.76487 -9.51292 -9.49136 -8.65769 -8.46482 -8.11494 -6.08799 -4.12504 0.22983 0.71847 1.03936 1.43935 2.11005 2.51140 2.77196 3.30269 3.38083 3.43323 3.62954 4.00152 4.26457 4.43575 4.51997 4.79143 4.86476 4.90133 5.22720 5.27833 5.31996 5.33398 5.42965 5.51105 5.54128 5.71984 5.95050 6.04081 6.12275 6.19314 6.30222 6.56012 6.61309 6.64538 7.18322 7.34148 7.43695 7.55028 7.73867 7.88847 8.16721 8.90174 9.52804 10.99861 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.013986 B = 0.003581 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.512113 B = 7816.174552 C = 8462.149802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.147 4.147 3 C 0.120 3.880 4 N -0.976 5.976 5 C 0.255 3.745 6 C -0.527 4.527 7 H 0.063 0.937 8 C 0.063 3.937 9 N -0.895 5.895 10 Si 0.896 3.104 11 H -0.271 1.271 12 H -0.284 1.284 13 H -0.282 1.282 14 S 2.711 3.289 15 O -0.936 6.936 16 O -0.966 6.966 17 C -0.840 4.840 18 C 0.198 3.802 19 N -0.493 5.493 20 C 0.276 3.724 21 N -0.637 5.637 22 C 0.503 3.497 23 C -0.169 4.169 24 O -0.471 6.471 25 S 0.256 5.744 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.039 0.961 34 H 0.038 0.962 35 H 0.263 0.737 36 H 0.190 0.810 37 H 0.425 0.575 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.445 -14.212 -10.739 17.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.187 4.187 3 C -0.006 4.006 4 N -0.815 5.815 5 C 0.134 3.866 6 C -0.566 4.566 7 H 0.081 0.919 8 C -0.139 4.139 9 N -0.534 5.534 10 Si 0.724 3.276 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.208 1.208 14 S 2.793 3.207 15 O -0.926 6.926 16 O -0.956 6.956 17 C -1.042 5.042 18 C 0.039 3.961 19 N -0.215 5.215 20 C -0.091 4.091 21 N -0.289 5.289 22 C 0.287 3.713 23 C -0.229 4.229 24 O -0.339 6.339 25 S 0.509 5.491 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.207 0.793 37 H 0.263 0.737 38 H 0.119 0.881 39 H 0.112 0.888 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.755 -13.794 -11.162 17.761 hybrid contribution -0.173 0.209 0.507 0.575 sum 0.582 -13.585 -10.656 17.276 Atomic orbital electron populations 1.21685 0.95529 1.01382 1.01971 1.22036 0.95945 0.98379 1.02330 1.21338 0.79348 0.95897 1.04063 1.57446 1.14102 1.87883 1.22097 1.19130 0.90996 0.97923 0.78587 1.21511 1.36079 0.93567 1.05488 0.91906 1.24916 0.95082 0.97090 0.96841 1.69925 1.37426 1.28963 1.17135 0.86463 0.78006 0.84212 0.78919 1.19556 1.20994 1.20810 1.01714 0.73925 0.72315 0.72697 1.93615 1.40132 1.75461 1.83385 1.93510 1.66431 1.72106 1.63537 1.37674 1.08701 1.33496 1.24377 1.21373 0.98410 0.86426 0.89859 1.66691 1.12121 1.16191 1.26451 1.24437 0.94334 0.92532 0.97811 1.43365 1.24814 1.10767 1.49928 1.21317 0.85784 0.86218 0.77958 1.21940 1.03127 0.92737 1.05048 1.90874 1.20201 1.78191 1.44635 1.84048 1.19210 1.01834 1.43987 0.92657 0.93009 0.92385 0.92772 0.91150 0.89137 0.90149 0.94332 0.94423 0.92741 0.79290 0.73677 0.88147 0.88775 0.88707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 37.16 0.37 -1.42 16 2 C -0.15 -2.17 6.26 -26.73 -0.17 -2.34 16 3 C 0.12 2.05 5.68 -4.04 -0.02 2.02 16 4 N -0.98 -19.81 2.77 -115.67 -0.32 -20.13 16 5 C 0.26 6.16 5.10 -5.19 -0.03 6.13 16 6 C -0.53 -14.33 9.38 -34.44 -0.32 -14.65 16 7 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.90 -25.36 13.29 55.43 0.74 -24.62 16 10 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 S 2.71 54.14 5.80 -107.50 -0.62 53.52 16 15 O -0.94 -21.79 16.92 -57.17 -0.97 -22.76 16 16 O -0.97 -19.65 16.39 -57.17 -0.94 -20.59 16 17 C -0.84 -14.17 6.64 29.06 0.19 -13.98 16 18 C 0.20 3.14 10.24 -19.16 -0.20 2.95 16 19 N -0.49 -8.03 8.65 -15.12 -0.13 -8.16 16 20 C 0.28 3.78 8.02 -87.34 -0.70 3.08 16 21 N -0.64 -6.02 5.40 -13.07 -0.07 -6.09 16 22 C 0.50 5.08 7.90 -10.98 -0.09 4.99 16 23 C -0.17 -0.74 10.32 36.01 0.37 -0.37 16 24 O -0.47 -7.27 15.72 5.55 0.09 -7.18 16 25 S 0.26 3.68 23.14 -107.50 -2.49 1.20 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.77 7.30 -51.93 -0.38 0.39 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.09 1.57 8.11 -51.93 -0.42 1.15 16 32 H 0.08 1.29 6.92 -51.93 -0.36 0.93 16 33 H 0.04 0.94 8.11 -51.93 -0.42 0.52 16 34 H 0.04 0.96 7.61 -51.93 -0.40 0.56 16 35 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.19 2.63 8.06 -52.49 -0.42 2.21 16 37 H 0.43 2.09 8.82 -40.82 -0.36 1.73 16 38 H 0.10 0.47 8.12 -51.93 -0.42 0.05 16 39 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 40 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 LS Contribution 371.86 15.07 5.60 5.60 Total: -1.00 -36.86 371.86 -10.08 -46.94 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -5.26 Total: -2.14 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -0.69 Total: -11.94 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: 0.21 Total: -59.01 kcal Atomic # 8 Polarization: -48.71 SS G_CDS: -1.82 Total: -50.53 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 57.83 SS G_CDS: -3.11 Total: 54.72 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.86 -10.08 -46.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260704752.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.379 kcal (2) G-P(sol) polarization free energy of solvation -36.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds