Wall clock time and date at job start Wed Apr 1 2020 04:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86794 * 119.99718 * 2 1 4 4 H 1.48502 * 109.46887 * 269.99790 * 3 2 1 5 5 H 1.48503 * 109.47571 * 29.99778 * 3 2 1 6 6 H 1.48503 * 109.47166 * 150.00384 * 3 2 1 7 7 C 1.39948 * 119.99864 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99508 * 197.84229 * 7 2 1 9 9 C 1.41395 * 120.00057 * 17.84702 * 7 2 1 10 10 C 1.40713 * 120.24051 * 204.37740 * 9 7 2 11 11 C 1.37622 * 119.74224 * 180.02562 * 10 9 7 12 12 C 1.38636 * 120.24803 * 0.02810 * 11 10 9 13 13 C 1.50702 * 119.74776 * 179.97438 * 12 11 10 14 14 N 1.46497 * 109.47050 * 90.00382 * 13 12 11 15 15 C 1.34774 * 120.00191 * 179.97438 * 14 13 12 16 16 O 1.21591 * 119.99910 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00163 * 179.97438 * 15 14 13 18 18 N 1.40098 * 120.00076 * 359.97438 * 17 15 14 19 19 C 1.34773 * 120.00076 * 179.97438 * 18 17 15 20 20 O 1.21565 * 120.00161 * 0.02562 * 19 18 17 21 21 C 1.47756 * 120.00159 * 180.02562 * 19 18 17 22 22 C 1.39349 * 124.11547 * 179.72699 * 21 19 18 23 23 N 1.30093 * 112.14169 * 179.81919 * 22 21 19 24 24 S 1.55926 * 108.75588 * 0.42831 * 23 22 21 25 25 N 1.31488 * 124.11458 * 0.02562 * 21 19 18 26 26 C 1.38638 * 120.50272 * 0.25283 * 12 11 10 27 27 C 1.37623 * 120.24488 * 359.44049 * 26 12 11 28 28 H 0.96994 * 120.00474 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.13146 * 0.02562 * 10 9 7 30 30 H 1.07997 * 119.87295 * 180.02562 * 11 10 9 31 31 H 1.08997 * 109.46932 * 330.00145 * 13 12 11 32 32 H 1.09005 * 109.46787 * 210.00075 * 13 12 11 33 33 H 0.96999 * 119.99638 * 0.27382 * 14 13 12 34 34 H 0.97003 * 119.99960 * 180.02562 * 17 15 14 35 35 H 0.97003 * 119.99964 * 0.02562 * 18 17 15 36 36 H 1.07997 * 123.93156 * 359.97438 * 22 21 19 37 37 H 1.07997 * 119.87825 * 179.70117 * 26 12 11 38 38 H 1.07993 * 120.12444 * 180.27537 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.4896 2.0464 -1.4001 5 1 1.4396 2.6527 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0080 -1.2120 0.0005 8 1 3.0490 -1.2343 0.2871 9 6 1.3520 -2.4072 -0.3742 10 6 1.8259 -3.6498 0.0855 11 6 1.1799 -4.8068 -0.2860 12 6 0.0667 -4.7512 -1.1104 13 6 -0.6318 -6.0252 -1.5107 14 7 -1.6748 -6.3388 -0.5310 15 6 -2.4349 -7.4410 -0.6854 16 8 -2.2546 -8.1753 -1.6376 17 7 -3.3941 -7.7299 0.2162 18 7 -3.6008 -6.8847 1.3142 19 6 -4.5604 -7.1732 2.2155 20 8 -5.2463 -8.1671 2.0760 21 6 -4.7787 -6.2815 3.3732 22 6 -5.7479 -6.4942 4.3517 23 7 -5.7338 -5.5681 5.2652 24 16 -4.6205 -4.5344 4.9141 25 7 -4.0859 -5.1878 3.6027 26 6 -0.4055 -3.5329 -1.5740 27 6 0.2210 -2.3628 -1.2102 28 1 -0.4850 0.8400 0.0004 29 1 2.6932 -3.6955 0.7275 30 1 1.5415 -5.7616 0.0660 31 1 0.0911 -6.8402 -1.5455 32 1 -1.0837 -5.8980 -2.4945 33 1 -1.8212 -5.7509 0.2264 34 1 -3.9409 -8.5234 0.1052 35 1 -3.0537 -6.0914 1.4253 36 1 -6.4297 -7.3317 4.3529 37 1 -1.2707 -3.5017 -2.2196 38 1 -0.1512 -1.4146 -1.5688 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001312921341.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:10 Heat of formation + Delta-G solvation = 33.448584 kcal Electronic energy + Delta-G solvation = -26270.785384 eV Core-core repulsion = 22240.935382 eV Total energy + Delta-G solvation = -4029.850002 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.36471 -41.42327 -40.10584 -39.42873 -37.00008 -36.37974 -35.06429 -34.82596 -32.39977 -31.74563 -31.14067 -28.68203 -28.35184 -25.50216 -24.58977 -22.89339 -22.52435 -22.04852 -21.70874 -20.62169 -20.29790 -19.22041 -19.02589 -17.93887 -17.38859 -17.17698 -16.78592 -16.66504 -16.34267 -16.07009 -15.81316 -15.63906 -15.57089 -15.36814 -14.94992 -14.19682 -13.81929 -13.73728 -13.44245 -13.31558 -12.85066 -12.72341 -12.66621 -12.61256 -12.47594 -12.32643 -12.13707 -12.08715 -11.91292 -11.51191 -11.43715 -11.26818 -11.02562 -10.35707 -10.25935 -9.51842 -9.38251 -9.27691 -8.65870 -6.35521 -0.72273 0.22822 0.35910 0.49616 0.68993 0.86340 1.16225 1.40395 1.48004 1.52331 1.67827 1.98503 2.03072 2.21074 2.74156 3.02201 3.45375 3.72565 3.84389 3.97351 4.14155 4.34358 4.48095 4.53543 4.68860 4.77062 5.05919 5.07154 5.15986 5.24730 5.32134 5.38213 5.45163 5.48422 5.70273 5.93915 6.04840 6.10566 6.21935 6.37676 6.39489 6.69763 6.93529 6.98290 7.02364 7.28298 8.30210 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.008765 B = 0.002971 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3193.928104 B = 9420.672509 C =12126.123150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.040 3.960 3 Si 0.978 3.022 4 H -0.265 1.265 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.496 4.496 8 H 0.075 0.925 9 C 0.089 3.911 10 C -0.243 4.243 11 C -0.065 4.065 12 C -0.230 4.230 13 C 0.208 3.792 14 N -0.725 5.725 15 C 0.714 3.286 16 O -0.607 6.607 17 N -0.524 5.524 18 N -0.502 5.502 19 C 0.615 3.385 20 O -0.538 6.538 21 C 0.000 4.000 22 C 0.100 3.900 23 N -0.596 5.596 24 S 0.806 5.194 25 N -0.571 5.571 26 C -0.080 4.080 27 C -0.191 4.191 28 H 0.289 0.711 29 H 0.097 0.903 30 H 0.116 0.884 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.399 0.601 34 H 0.445 0.555 35 H 0.436 0.564 36 H 0.234 0.766 37 H 0.105 0.895 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.964 -5.978 9.764 15.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.177 4.177 3 Si 0.799 3.201 4 H -0.190 1.190 5 H -0.192 1.192 6 H -0.183 1.183 7 C -0.525 4.525 8 H 0.093 0.907 9 C 0.086 3.914 10 C -0.263 4.263 11 C -0.084 4.084 12 C -0.231 4.231 13 C 0.086 3.914 14 N -0.381 5.381 15 C 0.413 3.587 16 O -0.484 6.484 17 N -0.281 5.281 18 N -0.253 5.253 19 C 0.396 3.604 20 O -0.413 6.413 21 C -0.174 4.174 22 C -0.092 4.092 23 N -0.438 5.438 24 S 0.847 5.153 25 N -0.423 5.423 26 C -0.099 4.099 27 C -0.211 4.211 28 H 0.100 0.900 29 H 0.115 0.885 30 H 0.134 0.866 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.235 0.765 34 H 0.291 0.709 35 H 0.280 0.720 36 H 0.250 0.750 37 H 0.123 0.877 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.805 -5.213 9.952 14.912 hybrid contribution -0.171 -0.279 -0.533 0.625 sum -9.976 -5.492 9.419 14.779 Atomic orbital electron populations 1.69847 1.08828 1.30656 1.34748 1.26683 0.95469 1.04281 0.91222 0.85263 0.79204 0.76238 0.79425 1.18971 1.19150 1.18315 1.19900 0.98410 0.92580 1.41586 0.90669 1.17985 0.91614 0.93027 0.88753 1.21152 1.04516 0.93014 1.07596 1.20687 0.94682 0.96948 0.96044 1.19157 1.01458 0.93070 1.09447 1.19758 0.87532 0.93956 0.90187 1.45570 1.37133 1.25034 1.30355 1.15784 0.79010 0.82339 0.81547 1.90993 1.72355 1.52840 1.32217 1.44433 1.39359 1.26336 1.17985 1.44626 1.37672 1.24930 1.18110 1.16742 0.79338 0.84141 0.80173 1.90857 1.47501 1.27343 1.75575 1.21847 0.99494 0.95270 1.00827 1.23898 0.98506 0.99405 0.87384 1.72264 1.27632 1.11829 1.32063 1.79129 1.09861 1.22650 1.03670 1.72289 1.31812 1.13466 1.24762 1.20764 0.98209 0.92323 0.98594 1.21252 1.00384 0.97051 1.02393 0.90012 0.88481 0.86584 0.91405 0.91932 0.76453 0.70867 0.72006 0.75016 0.87721 0.88170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.77 10.95 21.83 0.24 -39.53 16 2 C 0.04 1.88 5.14 85.26 0.44 2.31 16 3 Si 0.98 36.00 29.59 68.60 2.03 38.03 16 4 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 5 H -0.27 -9.30 7.11 99.48 0.71 -8.59 16 6 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 7 C -0.50 -25.21 9.05 23.46 0.21 -25.00 16 8 H 0.08 3.72 7.91 -2.91 -0.02 3.70 16 9 C 0.09 4.46 5.57 -21.29 -0.12 4.34 16 10 C -0.24 -10.95 9.80 22.73 0.22 -10.73 16 11 C -0.06 -2.53 9.67 22.22 0.21 -2.31 16 12 C -0.23 -8.58 5.27 -19.67 -0.10 -8.68 16 13 C 0.21 6.64 5.79 85.63 0.50 7.14 16 14 N -0.72 -20.65 5.51 -482.30 -2.66 -23.31 16 15 C 0.71 21.05 8.68 179.06 1.55 22.60 16 16 O -0.61 -21.98 17.18 -4.00 -0.07 -22.05 16 17 N -0.52 -12.72 6.26 -184.75 -1.16 -13.88 16 18 N -0.50 -10.79 6.25 -175.67 -1.10 -11.89 16 19 C 0.61 13.11 7.94 86.76 0.69 13.79 16 20 O -0.54 -13.24 16.64 -3.92 -0.07 -13.31 16 21 C 0.00 0.00 6.81 41.98 0.29 0.28 16 22 C 0.10 1.53 11.22 85.22 0.96 2.48 16 23 N -0.60 -9.37 11.41 -92.44 -1.05 -10.42 16 24 S 0.81 10.91 23.69 -56.49 -1.34 9.57 16 25 N -0.57 -10.53 11.00 -80.59 -0.89 -11.42 16 26 C -0.08 -3.33 9.67 22.22 0.21 -3.12 16 27 C -0.19 -9.30 8.70 22.73 0.20 -9.11 16 28 H 0.29 12.73 8.30 -92.71 -0.77 11.96 16 29 H 0.10 4.17 8.06 -2.91 -0.02 4.15 16 30 H 0.12 3.87 8.06 -2.91 -0.02 3.84 16 31 H 0.07 2.12 8.08 -2.39 -0.02 2.10 16 32 H 0.06 2.02 8.08 -2.38 -0.02 2.00 16 33 H 0.40 10.51 6.38 -92.71 -0.59 9.92 16 34 H 0.44 10.35 8.10 -213.32 -1.73 8.63 16 35 H 0.44 8.93 6.29 -213.32 -1.34 7.59 16 36 H 0.23 2.49 8.06 -2.91 -0.02 2.47 16 37 H 0.10 3.96 8.06 -2.91 -0.02 3.93 16 38 H 0.10 5.17 6.16 -2.91 -0.02 5.15 16 Total: -1.00 -61.61 354.65 -3.28 -64.89 By element: Atomic # 1 Polarization: 41.79 SS G_CDS: -2.48 Total: 39.31 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: 5.26 Total: -5.99 kcal Atomic # 7 Polarization: -103.83 SS G_CDS: -6.62 Total: -110.45 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -0.13 Total: -35.36 kcal Atomic # 14 Polarization: 36.00 SS G_CDS: 2.03 Total: 38.03 kcal Atomic # 16 Polarization: 10.91 SS G_CDS: -1.34 Total: 9.57 kcal Total: -61.61 -3.28 -64.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001312921341.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.336 kcal (2) G-P(sol) polarization free energy of solvation -61.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds