Wall clock time and date at job start Wed Apr 1 2020 04:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86797 * 120.00375 * 2 1 4 4 H 1.48506 * 109.46953 * 269.99701 * 3 2 1 5 5 H 1.48494 * 109.47187 * 29.99435 * 3 2 1 6 6 H 1.48495 * 109.47353 * 150.00076 * 3 2 1 7 7 C 1.38658 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00271 * 359.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 180.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38898 * 120.06778 * 354.17533 * 10 9 7 12 12 C 1.38080 * 119.93241 * 179.72269 * 11 10 9 13 13 C 1.38324 * 120.06728 * 0.56847 * 12 11 10 14 14 C 1.38274 * 120.13742 * 359.68073 * 13 12 11 15 15 C 1.50705 * 119.96893 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.47170 * 270.02604 * 15 14 13 17 17 C 1.34777 * 119.99835 * 179.97438 * 16 15 14 18 18 O 1.21513 * 120.00017 * 359.97438 * 17 16 15 19 19 C 1.48165 * 119.99763 * 179.97438 * 17 16 15 20 20 C 1.39571 * 120.87516 * 179.97438 * 19 17 16 21 21 C 1.39045 * 118.96765 * 180.02562 * 20 19 17 22 22 N 1.39027 * 119.63452 * 179.97438 * 21 20 19 23 23 N 1.32360 * 120.72866 * 359.97438 * 21 20 19 24 24 C 1.31979 * 121.93037 * 0.02562 * 23 21 20 25 25 Cl 1.73599 * 119.51718 * 180.02562 * 24 23 21 26 26 C 1.38177 * 120.96299 * 359.72059 * 24 23 21 27 27 C 1.38123 * 120.07195 * 0.04687 * 14 13 12 28 28 H 0.96999 * 119.99329 * 0.02562 * 1 2 3 29 29 H 1.08010 * 120.03286 * 359.97438 * 11 10 9 30 30 H 1.07998 * 119.96946 * 180.27290 * 12 11 10 31 31 H 1.08001 * 119.93050 * 179.70445 * 13 12 11 32 32 H 1.09006 * 109.46654 * 30.02469 * 15 14 13 33 33 H 1.08999 * 109.47320 * 150.02208 * 15 14 13 34 34 H 0.97004 * 120.00059 * 359.97438 * 16 15 14 35 35 H 1.07998 * 120.51639 * 0.02562 * 20 19 17 36 36 H 0.96998 * 119.99886 * 359.97438 * 22 21 20 37 37 H 0.96997 * 119.99434 * 179.97438 * 22 21 20 38 38 H 1.08001 * 120.41688 * 180.30479 * 26 24 23 39 39 H 1.07998 * 120.03894 * 180.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4471 2.6526 0.6999 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0014 9 8 3.3570 -1.2009 0.0011 10 6 3.9734 -2.4059 -0.1046 11 6 3.2238 -3.5750 -0.0851 12 6 3.8530 -4.7989 -0.1986 13 6 5.2295 -4.8618 -0.3196 14 6 5.9790 -3.6999 -0.3341 15 6 7.4784 -3.7729 -0.4667 16 7 8.0830 -3.8566 0.8651 17 6 9.4225 -3.9320 0.9936 18 8 10.1287 -3.9310 0.0047 19 6 10.0339 -4.0162 2.3405 20 6 11.4188 -4.0955 2.4948 21 6 11.9502 -4.1734 3.7773 22 7 13.3277 -4.2535 3.9470 23 7 11.1590 -4.1722 4.8384 24 6 9.8458 -4.0984 4.7298 25 17 8.8675 -4.1009 6.1639 26 6 9.2385 -4.0129 3.4916 27 6 5.3550 -2.4724 -0.2267 28 1 -0.4849 0.8401 -0.0004 29 1 2.1493 -3.5267 0.0145 30 1 3.2703 -5.7081 -0.1879 31 1 5.7198 -5.8205 -0.4034 32 1 7.7494 -4.6563 -1.0449 33 1 7.8421 -2.8801 -0.9753 34 1 7.5192 -3.8578 1.6545 35 1 12.0676 -4.0963 1.6314 36 1 13.9124 -4.2551 3.1731 37 1 13.7040 -4.3077 4.8394 38 1 8.1633 -3.9480 3.4132 39 1 5.9409 -1.5652 -0.2384 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318464279.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:33 Heat of formation + Delta-G solvation = -1.841104 kcal Electronic energy + Delta-G solvation = -25911.556936 eV Core-core repulsion = 21845.840201 eV Total energy + Delta-G solvation = -4065.716735 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.01790 -39.66724 -39.11476 -37.10552 -37.02112 -35.18484 -34.70726 -33.01051 -32.47112 -30.93914 -29.64883 -29.42168 -26.59573 -25.30314 -24.26770 -23.66066 -21.90316 -20.92071 -20.81274 -18.85987 -18.09741 -17.79174 -17.23366 -16.73247 -16.34885 -15.73536 -15.69092 -15.38839 -15.30305 -15.07154 -14.94060 -14.65528 -14.12177 -13.97545 -13.82964 -13.49060 -12.84432 -12.69296 -12.56756 -12.50766 -12.23781 -12.12434 -11.62907 -11.52128 -11.01065 -10.98842 -10.93390 -10.80847 -10.57330 -10.23915 -10.13535 -10.03688 -9.50157 -9.23684 -8.95880 -8.40491 -8.39983 -7.53048 -6.49183 -4.16653 0.29953 0.68155 1.39038 1.72520 2.09999 2.59265 2.90910 3.09360 3.17864 3.21555 3.35200 3.41224 4.15761 4.17276 4.38317 4.42700 4.57948 4.58840 4.67074 4.81024 4.99295 5.04665 5.19290 5.34619 5.55930 5.61866 5.68851 5.73679 5.78387 5.96313 6.09831 6.20058 6.36255 6.62127 6.62644 6.82031 6.93851 7.05072 7.15814 7.26982 7.45582 7.56732 7.69440 7.90744 7.94155 8.85563 9.45938 10.58126 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.011980 B = 0.002358 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.699665 B =11872.332943 C =12646.386292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.392 4.392 8 H 0.107 0.893 9 O -0.215 6.215 10 C 0.156 3.844 11 C -0.210 4.210 12 C -0.077 4.077 13 C -0.186 4.186 14 C -0.078 4.078 15 C 0.167 3.833 16 N -0.709 5.709 17 C 0.558 3.442 18 O -0.530 6.530 19 C -0.029 4.029 20 C -0.177 4.177 21 C 0.421 3.579 22 N -0.845 5.845 23 N -0.530 5.530 24 C 0.225 3.775 25 Cl -0.022 7.022 26 C -0.185 4.185 27 C -0.171 4.171 28 H 0.280 0.720 29 H 0.134 0.866 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.406 0.594 35 H 0.152 0.848 36 H 0.413 0.587 37 H 0.408 0.592 38 H 0.149 0.851 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.086 -9.845 7.372 25.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.467 4.467 8 H 0.124 0.876 9 O -0.119 6.119 10 C 0.104 3.896 11 C -0.230 4.230 12 C -0.095 4.095 13 C -0.205 4.205 14 C -0.079 4.079 15 C 0.045 3.955 16 N -0.360 5.360 17 C 0.344 3.656 18 O -0.407 6.407 19 C -0.040 4.040 20 C -0.203 4.203 21 C 0.183 3.817 22 N -0.389 5.389 23 N -0.251 5.251 24 C 0.060 3.940 25 Cl 0.007 6.993 26 C -0.210 4.210 27 C -0.191 4.191 28 H 0.091 0.909 29 H 0.152 0.848 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.242 0.758 35 H 0.170 0.830 36 H 0.244 0.756 37 H 0.237 0.763 38 H 0.167 0.833 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 22.695 -9.509 7.583 25.748 hybrid contribution -0.366 0.686 -0.127 0.787 sum 22.329 -8.823 7.456 25.140 Atomic orbital electron populations 1.69642 1.05590 1.28627 1.47523 1.24473 0.95032 0.98890 0.95530 0.86183 0.80331 0.81380 0.79035 1.19824 1.20721 1.18329 1.20759 0.76754 0.96667 1.52514 0.87566 1.83575 1.22714 1.25550 1.80102 1.19054 0.91547 0.85651 0.93352 1.21384 1.01367 0.91920 1.08308 1.20811 0.94149 0.96874 0.97689 1.20554 0.93893 0.96713 1.09336 1.19220 0.93139 0.93089 1.02449 1.20240 0.89117 1.02926 0.83200 1.46070 1.06092 1.73327 1.10505 1.18016 0.82490 0.77271 0.87863 1.90786 1.61587 1.49699 1.38641 1.20025 0.93483 0.97361 0.93170 1.21515 0.94989 1.06715 0.97087 1.17879 0.85903 0.90280 0.87668 1.42209 1.01960 1.82404 1.12311 1.66184 1.04628 1.20896 1.33417 1.21038 0.88269 0.96788 0.87865 1.98437 1.66361 1.96253 1.38246 1.21709 1.01747 1.07272 0.90261 1.20082 0.92026 0.97214 1.09748 0.90939 0.84794 0.86915 0.87215 0.90377 0.90383 0.75827 0.83018 0.75583 0.76263 0.83320 0.86324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.66 13.96 55.48 0.77 -23.88 16 2 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 3 Si 0.91 21.09 28.62 -169.99 -4.86 16.23 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.39 -10.60 9.95 30.89 0.31 -10.29 16 8 H 0.11 2.93 5.44 -52.49 -0.29 2.64 16 9 O -0.21 -5.38 8.59 0.05 0.00 -5.38 16 10 C 0.16 3.35 6.65 -39.11 -0.26 3.09 16 11 C -0.21 -4.18 9.17 -39.40 -0.36 -4.54 16 12 C -0.08 -1.25 10.04 -39.61 -0.40 -1.65 16 13 C -0.19 -2.73 9.70 -39.54 -0.38 -3.11 16 14 C -0.08 -1.17 5.25 -104.65 -0.55 -1.72 16 15 C 0.17 2.11 5.80 -5.19 -0.03 2.08 16 16 N -0.71 -8.10 5.51 -62.32 -0.34 -8.45 16 17 C 0.56 6.81 7.80 -12.18 -0.09 6.72 16 18 O -0.53 -7.92 16.44 5.35 0.09 -7.83 16 19 C -0.03 -0.31 5.90 -104.69 -0.62 -0.93 16 20 C -0.18 -1.66 9.50 -38.79 -0.37 -2.03 16 21 C 0.42 3.75 7.74 -155.06 -1.20 2.55 16 22 N -0.84 -4.42 9.07 31.11 0.28 -4.14 16 23 N -0.53 -5.61 10.34 -9.59 -0.10 -5.71 16 24 C 0.22 2.36 7.27 -17.51 -0.13 2.23 16 25 Cl -0.02 -0.21 29.10 -51.86 -1.51 -1.72 16 26 C -0.19 -1.82 9.37 -38.98 -0.37 -2.18 16 27 C -0.17 -3.06 9.65 -39.39 -0.38 -3.44 16 28 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.13 2.83 5.64 -52.48 -0.30 2.54 16 30 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 32 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 33 H 0.08 1.01 8.08 -51.93 -0.42 0.59 16 34 H 0.41 4.10 6.60 -40.82 -0.27 3.83 16 35 H 0.15 1.26 7.74 -52.49 -0.41 0.86 16 36 H 0.41 1.15 8.82 -40.82 -0.36 0.79 16 37 H 0.41 1.73 8.95 -40.82 -0.37 1.36 16 38 H 0.15 1.22 6.53 -52.49 -0.34 0.88 16 39 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 360.58 15.07 5.43 5.43 Total: -1.00 -31.09 360.58 -8.73 -39.82 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -3.57 Total: 7.18 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: -4.92 Total: -11.56 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 0.61 Total: -42.18 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.09 Total: -13.21 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.86 Total: 16.23 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -1.51 Total: -1.72 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.09 -8.73 -39.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318464279.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.980 kcal (2) G-P(sol) polarization free energy of solvation -31.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds