Wall clock time and date at job start Wed Apr 1 2020 04:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86797 * 120.00375 * 2 1 4 4 H 1.48506 * 109.46953 * 269.99701 * 3 2 1 5 5 H 1.48494 * 109.47187 * 29.99435 * 3 2 1 6 6 H 1.48495 * 109.47353 * 150.00076 * 3 2 1 7 7 C 1.38658 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00271 * 359.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 180.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38898 * 120.06778 * 354.17533 * 10 9 7 12 12 C 1.38080 * 119.93241 * 179.72269 * 11 10 9 13 13 C 1.38324 * 120.06728 * 0.56847 * 12 11 10 14 14 C 1.38274 * 120.13742 * 359.68073 * 13 12 11 15 15 C 1.50705 * 119.96893 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.47170 * 270.02604 * 15 14 13 17 17 C 1.34777 * 119.99835 * 179.97438 * 16 15 14 18 18 O 1.21513 * 120.00017 * 359.97438 * 17 16 15 19 19 C 1.48165 * 119.99763 * 179.97438 * 17 16 15 20 20 C 1.39571 * 120.87516 * 179.97438 * 19 17 16 21 21 C 1.39045 * 118.96765 * 180.02562 * 20 19 17 22 22 N 1.39027 * 119.63452 * 179.97438 * 21 20 19 23 23 N 1.32360 * 120.72866 * 359.97438 * 21 20 19 24 24 C 1.31979 * 121.93037 * 0.02562 * 23 21 20 25 25 Cl 1.73599 * 119.51718 * 180.02562 * 24 23 21 26 26 C 1.38177 * 120.96299 * 359.72059 * 24 23 21 27 27 C 1.38123 * 120.07195 * 0.04687 * 14 13 12 28 28 H 0.96999 * 119.99329 * 0.02562 * 1 2 3 29 29 H 1.08010 * 120.03286 * 359.97438 * 11 10 9 30 30 H 1.07998 * 119.96946 * 180.27290 * 12 11 10 31 31 H 1.08001 * 119.93050 * 179.70445 * 13 12 11 32 32 H 1.09006 * 109.46654 * 30.02469 * 15 14 13 33 33 H 1.08999 * 109.47320 * 150.02208 * 15 14 13 34 34 H 0.97004 * 120.00059 * 359.97438 * 16 15 14 35 35 H 1.07998 * 120.51639 * 0.02562 * 20 19 17 36 36 H 0.96998 * 119.99886 * 359.97438 * 22 21 20 37 37 H 0.96997 * 119.99434 * 179.97438 * 22 21 20 38 38 H 1.08001 * 120.41688 * 180.30479 * 26 24 23 39 39 H 1.07998 * 120.03894 * 180.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4471 2.6526 0.6999 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0014 9 8 3.3570 -1.2009 0.0011 10 6 3.9734 -2.4059 -0.1046 11 6 3.2238 -3.5750 -0.0851 12 6 3.8530 -4.7989 -0.1986 13 6 5.2295 -4.8618 -0.3196 14 6 5.9790 -3.6999 -0.3341 15 6 7.4784 -3.7729 -0.4667 16 7 8.0830 -3.8566 0.8651 17 6 9.4225 -3.9320 0.9936 18 8 10.1287 -3.9310 0.0047 19 6 10.0339 -4.0162 2.3405 20 6 11.4188 -4.0955 2.4948 21 6 11.9502 -4.1734 3.7773 22 7 13.3277 -4.2535 3.9470 23 7 11.1590 -4.1722 4.8384 24 6 9.8458 -4.0984 4.7298 25 17 8.8675 -4.1009 6.1639 26 6 9.2385 -4.0129 3.4916 27 6 5.3550 -2.4724 -0.2267 28 1 -0.4849 0.8401 -0.0004 29 1 2.1493 -3.5267 0.0145 30 1 3.2703 -5.7081 -0.1879 31 1 5.7198 -5.8205 -0.4034 32 1 7.7494 -4.6563 -1.0449 33 1 7.8421 -2.8801 -0.9753 34 1 7.5192 -3.8578 1.6545 35 1 12.0676 -4.0963 1.6314 36 1 13.9124 -4.2551 3.1731 37 1 13.7040 -4.3077 4.8394 38 1 8.1633 -3.9480 3.4132 39 1 5.9409 -1.5652 -0.2384 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318464279.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:32 Heat of formation + Delta-G solvation = -22.862851 kcal Electronic energy + Delta-G solvation = -25912.468507 eV Core-core repulsion = 21845.840201 eV Total energy + Delta-G solvation = -4066.628307 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.81413 -40.98701 -40.27659 -38.56640 -37.81182 -36.02746 -35.60862 -34.44639 -33.80141 -32.18835 -30.98323 -30.26894 -27.77884 -27.09757 -25.23367 -24.37311 -23.31715 -22.31504 -21.79155 -19.91859 -19.51873 -18.89451 -18.57390 -17.48040 -17.18274 -16.89063 -16.82455 -16.55989 -16.30280 -16.07637 -15.82796 -15.69856 -15.62903 -15.52213 -15.02330 -14.72610 -14.45829 -14.18923 -13.86968 -13.46436 -13.25833 -13.24886 -13.09806 -12.59781 -12.46082 -12.38842 -12.35964 -11.93838 -11.69635 -11.54680 -11.30617 -10.91421 -10.88958 -10.83800 -10.21241 -9.78964 -9.11278 -9.01402 -8.49436 -6.21969 -0.48393 -0.03302 0.34318 0.65554 0.66417 1.32601 1.35644 1.52090 1.71689 1.99753 2.27978 2.47762 2.64521 2.78410 2.99540 3.14569 3.39298 3.70196 3.74799 3.86542 3.99223 4.07575 4.14707 4.28433 4.41810 4.44640 4.50697 4.66886 4.73086 4.90969 4.93672 5.09365 5.20022 5.24130 5.38658 5.63631 5.70126 5.76089 5.90213 6.10773 6.20174 6.27804 6.35804 6.85264 6.97846 7.05250 7.59342 8.61958 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.011980 B = 0.002358 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.699665 B =11872.332943 C =12646.386292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.010 3.990 3 Si 0.968 3.032 4 H -0.267 1.267 5 H -0.270 1.270 6 H -0.262 1.262 7 C -0.397 4.397 8 H 0.084 0.916 9 O -0.245 6.245 10 C 0.118 3.882 11 C -0.227 4.227 12 C -0.075 4.075 13 C -0.157 4.157 14 C -0.063 4.063 15 C 0.173 3.827 16 N -0.703 5.703 17 C 0.564 3.436 18 O -0.558 6.558 19 C -0.038 4.038 20 C -0.175 4.175 21 C 0.420 3.580 22 N -0.827 5.827 23 N -0.547 5.547 24 C 0.214 3.786 25 Cl -0.023 7.023 26 C -0.186 4.186 27 C -0.168 4.168 28 H 0.284 0.716 29 H 0.109 0.891 30 H 0.143 0.857 31 H 0.151 0.849 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.413 0.587 35 H 0.162 0.838 36 H 0.426 0.574 37 H 0.414 0.586 38 H 0.161 0.839 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.285 -11.299 7.387 28.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.188 4.188 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.194 1.194 6 H -0.186 1.186 7 C -0.473 4.473 8 H 0.101 0.899 9 O -0.153 6.153 10 C 0.070 3.930 11 C -0.247 4.247 12 C -0.092 4.092 13 C -0.176 4.176 14 C -0.064 4.064 15 C 0.050 3.950 16 N -0.354 5.354 17 C 0.351 3.649 18 O -0.438 6.438 19 C -0.049 4.049 20 C -0.201 4.201 21 C 0.179 3.821 22 N -0.373 5.373 23 N -0.269 5.269 24 C 0.050 3.950 25 Cl 0.006 6.994 26 C -0.210 4.210 27 C -0.188 4.188 28 H 0.094 0.906 29 H 0.127 0.873 30 H 0.161 0.839 31 H 0.169 0.831 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.251 0.749 35 H 0.180 0.820 36 H 0.260 0.740 37 H 0.245 0.755 38 H 0.179 0.821 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 25.945 -11.005 7.609 29.191 hybrid contribution -1.072 0.801 -0.135 1.345 sum 24.872 -10.204 7.474 27.904 Atomic orbital electron populations 1.69726 1.06875 1.29536 1.50193 1.25247 0.95838 1.02074 0.95653 0.85253 0.78874 0.77644 0.79194 1.19244 1.19434 1.18602 1.20694 0.78061 0.96091 1.52455 0.89896 1.83520 1.21216 1.27428 1.83086 1.19586 0.93001 0.85184 0.95271 1.21411 1.00424 0.93340 1.09476 1.21143 0.95296 0.96362 0.96444 1.21057 0.93094 0.98304 1.05108 1.19443 0.94579 0.91976 1.00370 1.20176 0.87044 1.03798 0.83961 1.45947 1.06111 1.73023 1.10357 1.18146 0.82301 0.76413 0.88084 1.90775 1.62167 1.51171 1.39664 1.19906 0.94007 0.98604 0.92403 1.21666 0.94832 1.06014 0.97634 1.18048 0.87000 0.89798 0.87210 1.42224 1.00755 1.80829 1.13449 1.66212 1.04885 1.21681 1.34127 1.21147 0.88487 0.97294 0.88092 1.98433 1.66395 1.96288 1.38314 1.21762 1.02310 1.07166 0.89800 1.20299 0.90555 0.98948 1.09001 0.90630 0.87321 0.83913 0.83128 0.88726 0.90495 0.74947 0.82034 0.74050 0.75455 0.82135 0.85749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.25 13.96 21.61 0.30 -53.95 16 2 C 0.01 0.59 5.49 84.83 0.47 1.05 16 3 Si 0.97 44.68 28.62 68.60 1.96 46.65 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 5 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 6 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.40 -22.65 9.95 67.92 0.68 -21.98 16 8 H 0.08 4.94 5.44 -2.91 -0.02 4.93 16 9 O -0.24 -12.75 8.59 -22.74 -0.20 -12.94 16 10 C 0.12 5.15 6.65 22.58 0.15 5.30 16 11 C -0.23 -9.15 9.17 22.39 0.21 -8.94 16 12 C -0.07 -2.23 10.04 22.25 0.22 -2.01 16 13 C -0.16 -3.92 9.70 22.30 0.22 -3.70 16 14 C -0.06 -1.67 5.25 -19.88 -0.10 -1.77 16 15 C 0.17 3.73 5.80 85.64 0.50 4.22 16 16 N -0.70 -13.85 5.51 -469.39 -2.58 -16.43 16 17 C 0.56 12.30 7.80 86.88 0.68 12.97 16 18 O -0.56 -15.32 16.44 -3.76 -0.06 -15.38 16 19 C -0.04 -0.72 5.90 -19.91 -0.12 -0.84 16 20 C -0.18 -2.90 9.50 22.79 0.22 -2.68 16 21 C 0.42 6.57 7.74 133.05 1.03 7.60 16 22 N -0.83 -6.62 9.07 -55.50 -0.50 -7.13 16 23 N -0.55 -10.64 10.34 -184.27 -1.91 -12.54 16 24 C 0.21 4.16 7.27 84.66 0.62 4.77 16 25 Cl -0.02 -0.43 29.10 -2.72 -0.08 -0.51 16 26 C -0.19 -3.28 9.37 22.66 0.21 -3.07 16 27 C -0.17 -5.81 9.65 22.39 0.22 -5.60 16 28 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 29 H 0.11 4.91 5.64 -2.91 -0.02 4.89 16 30 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 31 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 32 H 0.09 1.83 8.09 -2.38 -0.02 1.81 16 33 H 0.08 1.75 8.08 -2.39 -0.02 1.73 16 34 H 0.41 7.04 6.60 -92.71 -0.61 6.43 16 35 H 0.16 2.30 7.74 -2.91 -0.02 2.27 16 36 H 0.43 1.21 8.82 -92.71 -0.82 0.39 16 37 H 0.41 2.52 8.95 -92.71 -0.83 1.69 16 38 H 0.16 2.29 6.53 -2.91 -0.02 2.27 16 39 H 0.12 4.11 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -70.25 360.58 1.02 -69.22 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -1.09 Total: 17.68 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: 5.18 Total: -14.67 kcal Atomic # 7 Polarization: -85.36 SS G_CDS: -4.69 Total: -90.05 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -0.26 Total: -28.33 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.96 Total: 46.65 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -0.08 Total: -0.51 kcal Total: -70.25 1.02 -69.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318464279.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.361 kcal (2) G-P(sol) polarization free energy of solvation -70.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds