Wall clock time and date at job start Wed Apr 1 2020 04:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00148 * 2 1 4 4 H 1.48500 * 109.47134 * 269.99876 * 3 2 1 5 5 H 1.48499 * 109.47048 * 29.99775 * 3 2 1 6 6 H 1.48504 * 109.47097 * 149.99898 * 3 2 1 7 7 C 1.37876 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00363 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00072 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47101 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47188 * 179.97438 * 10 9 7 12 12 S 1.81397 * 109.47042 * 180.02562 * 11 10 9 13 13 O 1.42099 * 110.54585 * 68.37477 * 12 11 10 14 14 O 1.42105 * 110.54280 * 291.62071 * 12 11 10 15 15 C 1.76204 * 104.44630 * 179.97438 * 12 11 10 16 16 N 1.29326 * 126.06501 * 90.02412 * 15 12 11 17 17 N 1.26094 * 117.96941 * 179.97438 * 16 15 12 18 18 C 1.30245 * 117.62096 * 359.97438 * 17 16 15 19 19 N 1.38704 * 126.16445 * 179.97438 * 18 17 16 20 20 C 1.47024 * 110.98999 * 236.34569 * 19 18 17 21 21 C 1.53103 * 109.24985 * 182.35198 * 20 19 18 22 22 O 1.43012 * 109.29295 * 303.21723 * 21 20 19 23 23 C 1.43011 * 113.74271 * 58.65008 * 22 21 20 24 24 C 1.47018 * 111.00060 * 0.02562 * 19 18 17 25 25 S 1.76477 * 126.06837 * 270.28311 * 15 12 11 26 26 H 0.96999 * 120.00053 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47213 * 59.99896 * 9 7 2 28 28 H 1.09005 * 109.46776 * 299.99565 * 9 7 2 29 29 H 1.09001 * 109.47163 * 59.99876 * 10 9 7 30 30 H 1.09000 * 109.47390 * 299.99651 * 10 9 7 31 31 H 1.09001 * 109.47036 * 59.99963 * 11 10 9 32 32 H 1.09000 * 109.46805 * 300.00174 * 11 10 9 33 33 H 1.08998 * 109.47369 * 62.43923 * 20 19 18 34 34 H 1.08998 * 109.54483 * 302.30131 * 20 19 18 35 35 H 1.09002 * 109.50635 * 183.25881 * 21 20 19 36 36 H 1.09003 * 109.50698 * 63.17493 * 21 20 19 37 37 H 1.08997 * 109.50806 * 61.26171 * 23 22 21 38 38 H 1.08997 * 109.50924 * 181.35636 * 23 22 21 39 39 H 1.08994 * 109.50209 * 57.67529 * 24 19 18 40 40 H 1.09003 * 109.54070 * 297.56494 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9872 0.0012 12 16 2.6590 -6.3659 0.0019 13 8 3.3558 -6.4256 1.2390 14 8 3.3558 -6.4269 -1.2351 15 6 1.6478 -7.8089 0.0034 16 7 1.2109 -8.4334 -1.0414 17 7 0.4948 -9.4558 -0.8628 18 6 0.2458 -9.8116 0.3651 19 7 -0.5168 -10.8996 0.7634 20 6 -1.6165 -10.4781 1.6435 21 6 -2.3950 -11.7128 2.1055 22 8 -2.8617 -12.4326 0.9611 23 6 -1.8163 -12.8589 0.0833 24 6 -1.0324 -11.6358 -0.4000 25 16 1.0461 -8.6545 1.4307 26 1 -0.4850 0.8400 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8904 29 1 2.8719 -3.6043 0.8905 30 1 2.8719 -3.6044 -0.8895 31 1 0.8533 -5.0452 -0.8886 32 1 0.8539 -5.0446 0.8914 33 1 -2.2832 -9.8105 1.0978 34 1 -1.2103 -9.9583 2.5113 35 1 -3.2458 -11.4011 2.7113 36 1 -1.7421 -12.3543 2.6976 37 1 -1.1460 -13.5333 0.6161 38 1 -2.2485 -13.3766 -0.7730 39 1 -0.1995 -11.9603 -1.0237 40 1 -1.6901 -10.9877 -0.9794 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318564427.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:49 Heat of formation + Delta-G solvation = -42.929103 kcal Electronic energy + Delta-G solvation = -25257.870811 eV Core-core repulsion = 21327.860024 eV Total energy + Delta-G solvation = -3930.010787 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.081 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.70017 -40.23508 -37.10994 -36.80244 -36.00322 -34.79493 -32.26630 -32.13969 -31.48796 -28.71269 -27.92538 -25.99209 -25.02642 -23.83920 -22.35938 -21.23170 -20.48177 -19.86402 -19.03871 -18.20552 -17.03213 -16.90445 -16.56990 -16.39152 -15.95765 -15.81655 -15.72719 -15.59057 -15.20900 -14.75600 -14.50997 -14.38926 -14.00759 -13.20540 -12.70978 -12.49384 -12.39094 -12.22241 -12.16437 -12.14879 -12.02401 -11.92761 -11.72225 -11.35857 -11.33395 -10.96083 -10.92749 -10.85719 -10.77570 -10.50057 -10.41393 -10.20698 -10.02547 -9.49892 -9.28301 -9.17177 -8.44148 -6.09150 -4.12493 -0.50032 -0.11875 0.19235 0.60643 1.88225 2.54578 2.69578 3.14334 3.29181 3.35518 3.39127 3.71443 3.77836 3.98134 4.05739 4.17046 4.34382 4.39667 4.41014 4.53656 4.57016 4.70831 4.94011 4.97246 5.00867 5.08579 5.16936 5.22077 5.27664 5.61091 5.71618 5.75885 6.16281 6.32078 6.39059 6.76659 7.51469 7.60163 7.88324 7.94354 8.27466 8.93523 9.52554 11.02025 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.019480 B = 0.002247 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.020387 B =12456.932961 C =13211.188794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.060 0.940 9 C 0.031 3.969 10 C -0.108 4.108 11 C -0.571 4.571 12 S 2.500 3.500 13 O -0.922 6.922 14 O -0.906 6.906 15 C -0.553 4.553 16 N -0.119 5.119 17 N -0.311 5.311 18 C 0.221 3.779 19 N -0.438 5.438 20 C 0.011 3.989 21 C 0.066 3.934 22 O -0.379 6.379 23 C 0.063 3.937 24 C 0.021 3.979 25 S 0.200 5.800 26 H 0.262 0.738 27 H 0.023 0.977 28 H 0.023 0.977 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.140 0.860 32 H 0.135 0.865 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.114 0.886 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.112 0.888 39 H 0.106 0.894 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.580 -26.395 5.132 27.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.078 0.922 9 C -0.008 4.008 10 C -0.148 4.148 11 C -0.706 4.706 12 S 2.672 3.328 13 O -0.918 6.918 14 O -0.903 6.903 15 C -0.909 4.909 16 N 0.040 4.960 17 N -0.159 5.159 18 C -0.146 4.146 19 N -0.159 5.159 20 C -0.116 4.116 21 C -0.011 4.011 22 O -0.297 6.297 23 C -0.015 4.015 24 C -0.107 4.107 25 S 0.440 5.560 26 H 0.072 0.928 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.158 0.842 32 H 0.153 0.847 33 H 0.091 0.909 34 H 0.119 0.881 35 H 0.132 0.868 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.130 0.870 39 H 0.124 0.876 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.820 -26.861 5.148 27.772 hybrid contribution -0.471 1.078 -0.336 1.223 sum -5.291 -25.784 4.812 26.757 Atomic orbital electron populations 1.69951 1.06106 1.26868 1.50448 1.25016 0.94895 0.99411 0.95035 0.86540 0.79858 0.83090 0.78237 1.20531 1.21190 1.19704 1.21225 0.93310 0.90706 1.51270 0.92214 1.19092 0.93488 0.90168 0.98022 1.21647 0.99655 0.90780 1.02671 1.30244 1.15129 1.12882 1.12329 1.06504 0.76233 0.74723 0.75334 1.93606 1.68254 1.85596 1.44350 1.93598 1.68143 1.84826 1.43689 1.42471 1.24976 1.27520 0.95964 1.70891 1.00878 0.98797 1.25385 1.71747 1.16505 1.11013 1.16647 1.28708 0.99111 0.94721 0.92110 1.59095 1.21869 1.15749 1.19183 1.23331 0.91206 0.99921 0.97145 1.22723 0.99081 0.90971 0.88353 1.88062 1.32492 1.73785 1.35345 1.22804 0.89705 0.94324 0.94628 1.23046 1.00909 0.96307 0.90447 1.85695 1.42392 1.20269 1.07653 0.92844 0.95837 0.95898 0.91005 0.90895 0.84195 0.84680 0.90917 0.88067 0.86837 0.91333 0.91593 0.86987 0.87596 0.90812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.02 13.29 55.43 0.74 -25.29 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.53 -14.36 9.11 -34.44 -0.31 -14.68 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.03 0.75 4.97 -27.88 -0.14 0.61 16 10 C -0.11 -2.05 5.16 -26.73 -0.14 -2.18 16 11 C -0.57 -8.34 5.98 37.16 0.22 -8.11 16 12 S 2.50 37.61 5.33 -107.50 -0.57 37.03 16 13 O -0.92 -15.07 17.83 -57.54 -1.03 -16.09 16 14 O -0.91 -16.29 17.93 -57.54 -1.03 -17.33 16 15 C -0.55 -7.75 7.42 51.71 0.38 -7.37 16 16 N -0.12 -1.81 11.53 31.16 0.36 -1.45 16 17 N -0.31 -4.26 10.66 31.00 0.33 -3.93 16 18 C 0.22 2.45 7.05 -87.13 -0.61 1.83 16 19 N -0.44 -3.61 4.80 -173.12 -0.83 -4.44 16 20 C 0.01 0.06 5.52 -3.70 -0.02 0.04 16 21 C 0.07 0.31 7.01 37.21 0.26 0.57 16 22 O -0.38 -2.57 10.83 -35.23 -0.38 -2.96 16 23 C 0.06 0.33 7.01 37.21 0.26 0.59 16 24 C 0.02 0.15 5.01 -3.71 -0.02 0.14 16 25 S 0.20 2.19 22.73 -107.50 -2.44 -0.26 16 26 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.14 1.85 8.14 -51.92 -0.42 1.42 16 32 H 0.13 1.63 8.14 -51.92 -0.42 1.21 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.10 0.47 7.60 -51.93 -0.39 0.08 16 35 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.11 0.78 8.04 -51.93 -0.42 0.36 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 364.88 15.07 5.50 5.50 Total: -1.00 -35.39 364.88 -10.02 -45.41 By element: Atomic # 1 Polarization: 0.11 SS G_CDS: -5.43 Total: -5.31 kcal Atomic # 6 Polarization: -26.82 SS G_CDS: -0.21 Total: -27.03 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: 0.60 Total: -35.11 kcal Atomic # 8 Polarization: -33.93 SS G_CDS: -2.44 Total: -36.37 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 39.80 SS G_CDS: -3.02 Total: 36.78 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.39 -10.02 -45.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318564427.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.479 kcal (2) G-P(sol) polarization free energy of solvation -35.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds