Wall clock time and date at job start Wed Apr 1 2020 04:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00397 * 2 1 4 4 H 1.48500 * 109.47383 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47020 * 300.00283 * 3 2 1 6 6 H 1.48501 * 109.47011 * 59.99742 * 3 2 1 7 7 C 1.37879 * 119.99819 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99881 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00274 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47218 * 179.97438 * 9 7 2 11 11 C 1.46504 * 120.00091 * 95.66378 * 10 9 7 12 12 C 1.50706 * 109.46809 * 89.99813 * 11 10 9 13 13 C 1.38221 * 119.61505 * 95.02496 * 12 11 10 14 14 C 1.38639 * 119.15811 * 179.97438 * 13 12 11 15 15 C 1.38661 * 118.42267 * 0.02562 * 14 13 12 16 16 C 1.38184 * 119.16464 * 0.02562 * 15 14 13 17 17 N 1.31850 * 119.61844 * 275.00200 * 12 11 10 18 18 C 1.34778 * 120.00238 * 275.66304 * 10 9 7 19 19 O 1.21362 * 120.00098 * 185.46170 * 18 10 9 20 20 C 1.49314 * 119.99709 * 5.46386 * 18 10 9 21 21 O 1.21391 * 119.99839 * 5.59000 * 20 18 10 22 22 N 1.34775 * 119.99815 * 185.59288 * 20 18 10 23 23 C 1.39246 * 119.99907 * 179.97438 * 22 20 18 24 24 C 1.35978 * 127.79251 * 180.02562 * 23 22 20 25 25 N 1.31185 * 115.48143 * 179.97438 * 24 23 22 26 26 N 1.28159 * 118.81302 * 359.97438 * 25 24 23 27 27 S 1.69871 * 106.61147 * 359.77284 * 26 25 24 28 28 H 0.96997 * 120.00019 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47108 * 59.99943 * 9 7 2 30 30 H 1.09003 * 109.47010 * 300.00203 * 9 7 2 31 31 H 1.08998 * 109.46997 * 330.00113 * 11 10 9 32 32 H 1.08994 * 109.47557 * 209.99983 * 11 10 9 33 33 H 1.08000 * 120.42681 * 359.95488 * 13 12 11 34 34 H 1.08003 * 120.78200 * 180.02562 * 14 13 12 35 35 H 1.08003 * 120.42312 * 179.97438 * 15 14 13 36 36 H 1.07993 * 119.62326 * 180.27919 * 16 15 14 37 37 H 0.96995 * 120.00032 * 0.02562 * 22 20 18 38 38 H 1.07999 * 122.26012 * 359.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 2.5848 -4.2514 1.2602 12 6 1.6409 -5.3891 1.5531 13 6 1.9835 -6.6747 1.1782 14 6 1.1083 -7.7143 1.4528 15 6 -0.0842 -7.4205 2.0965 16 6 -0.3591 -6.1106 2.4400 17 7 0.4980 -5.1468 2.1643 18 6 2.7276 -4.0496 -1.1639 19 8 3.4380 -5.0334 -1.1771 20 6 2.4346 -3.3231 -2.4350 21 8 1.8091 -2.2831 -2.4094 22 7 2.8647 -3.8220 -3.6108 23 6 2.5911 -3.1448 -4.7963 24 6 2.9448 -3.5008 -6.0601 25 7 2.5578 -2.6796 -7.0070 26 7 1.8937 -1.6324 -6.6831 27 16 1.7207 -1.6704 -4.9937 28 1 -0.4850 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6246 -2.5571 0.8897 31 1 2.5343 -3.5205 2.0672 32 1 3.6020 -4.6347 1.1803 33 1 2.9209 -6.8669 0.6775 34 1 1.3497 -8.7288 1.1720 35 1 -0.7898 -8.2054 2.3257 36 1 -1.2836 -5.8740 2.9455 37 1 3.3642 -4.6532 -3.6313 38 1 3.5064 -4.3991 -6.2701 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321125872.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:11 Heat of formation + Delta-G solvation = 62.649377 kcal Electronic energy + Delta-G solvation = -27679.232604 eV Core-core repulsion = 23650.648844 eV Total energy + Delta-G solvation = -4028.583761 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.88064 -40.14791 -39.79108 -38.32608 -36.10588 -34.84740 -32.83810 -32.33307 -31.55591 -30.60535 -27.81777 -27.15488 -26.15958 -24.07106 -23.45436 -22.82927 -21.95731 -21.43342 -19.94783 -18.36258 -17.70478 -17.08156 -16.90308 -16.54146 -16.40628 -15.80839 -15.63987 -15.42516 -15.30444 -14.84061 -14.56784 -14.28138 -13.99614 -13.80148 -13.19830 -13.16471 -12.84491 -12.40580 -12.29041 -11.92869 -11.74204 -11.69417 -11.60367 -11.53462 -11.15121 -10.91191 -10.66577 -10.13483 -9.93608 -9.82943 -9.78749 -9.41246 -9.34463 -9.17612 -8.88629 -8.64800 -8.40852 -8.12786 -6.09309 -4.11966 0.24199 0.98419 1.10939 1.35831 1.66377 1.80090 2.43283 2.45950 3.27507 3.35843 3.37323 3.45244 3.62409 4.05299 4.36099 4.42957 4.47279 4.67747 4.69789 4.80858 4.88708 5.10822 5.20906 5.28129 5.47731 5.56396 5.59376 5.83702 5.92178 5.96092 6.17998 6.21576 6.39089 6.74999 6.76079 7.11407 7.31667 7.72112 7.76781 7.88435 7.88987 8.08571 8.14041 8.26621 8.85977 9.50726 10.99540 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.008629 B = 0.004527 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3243.951084 B = 6184.105654 C = 8581.893365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.073 3.927 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.230 3.770 10 N -0.544 5.544 11 C 0.166 3.834 12 C 0.114 3.886 13 C -0.150 4.150 14 C -0.083 4.083 15 C -0.177 4.177 16 C 0.096 3.904 17 N -0.462 5.462 18 C 0.517 3.483 19 O -0.552 6.552 20 C 0.473 3.527 21 O -0.398 6.398 22 N -0.604 5.604 23 C 0.046 3.954 24 C -0.087 4.087 25 N -0.207 5.207 26 N -0.262 5.262 27 S 0.363 5.637 28 H 0.263 0.737 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.140 0.860 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.154 0.846 37 H 0.430 0.570 38 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.178 -13.991 -0.583 14.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.130 4.130 3 Si 0.719 3.281 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.074 0.926 9 C 0.112 3.888 10 N -0.274 5.274 11 C 0.042 3.958 12 C -0.025 4.025 13 C -0.171 4.171 14 C -0.109 4.109 15 C -0.197 4.197 16 C -0.061 4.061 17 N -0.171 5.171 18 C 0.299 3.701 19 O -0.433 6.433 20 C 0.254 3.746 21 O -0.261 6.261 22 N -0.254 5.254 23 C -0.191 4.191 24 C -0.256 4.256 25 N -0.074 5.074 26 N -0.245 5.245 27 S 0.496 5.504 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.125 0.875 32 H 0.113 0.887 33 H 0.158 0.842 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.172 0.828 37 H 0.269 0.731 38 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 1.846 -11.175 -0.894 11.362 hybrid contribution 1.573 -1.768 0.190 2.373 sum 3.418 -12.943 -0.705 13.405 Atomic orbital electron populations 1.69917 1.05896 1.26901 1.49644 1.24771 0.94720 0.98792 0.94752 0.86564 0.80013 0.83846 0.77725 1.19918 1.20754 1.20972 1.21171 0.92873 0.90034 1.51511 0.92615 1.20012 0.87186 0.81565 1.00033 1.48250 1.42362 1.33318 1.03437 1.20362 0.95629 0.92743 0.87024 1.21694 0.92913 0.94030 0.93855 1.22126 1.01464 0.93261 1.00202 1.21564 0.93683 0.99519 0.96170 1.22134 0.98194 0.98423 1.00991 1.22790 0.98169 0.88620 0.96533 1.67578 1.02302 1.36283 1.10918 1.19255 0.82015 0.84268 0.84596 1.90671 1.39812 1.26255 1.86584 1.20888 0.81927 0.86974 0.84838 1.91081 1.31733 1.19312 1.84005 1.42619 1.54615 1.26337 1.01807 1.24139 1.02854 1.01223 0.90914 1.23136 1.11356 1.05651 0.85435 1.70900 1.07061 0.99193 1.30217 1.82227 1.21129 1.16215 1.04957 1.86129 1.42906 1.13000 1.08395 0.92738 0.92686 0.93306 0.87483 0.88695 0.84248 0.85127 0.85128 0.82846 0.73069 0.79322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.65 13.29 55.43 0.74 -23.92 16 2 C 0.07 1.94 5.46 -17.82 -0.10 1.84 16 3 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -13.16 7.66 -34.44 -0.26 -13.43 16 8 H 0.06 1.43 7.81 -52.48 -0.41 1.02 16 9 C 0.23 5.35 4.76 -5.20 -0.02 5.33 16 10 N -0.54 -10.44 2.45 -176.99 -0.43 -10.88 16 11 C 0.17 2.72 5.65 -5.19 -0.03 2.69 16 12 C 0.11 1.78 6.36 -82.59 -0.53 1.25 16 13 C -0.15 -1.99 9.71 -39.44 -0.38 -2.37 16 14 C -0.08 -0.92 10.18 -39.28 -0.40 -1.32 16 15 C -0.18 -1.92 10.11 -39.45 -0.40 -2.32 16 16 C 0.10 1.26 11.18 -17.55 -0.20 1.06 16 17 N -0.46 -7.56 10.27 -9.47 -0.10 -7.66 16 18 C 0.52 9.30 7.67 -11.65 -0.09 9.21 16 19 O -0.55 -9.36 15.86 5.49 0.09 -9.27 16 20 C 0.47 8.41 7.65 -11.65 -0.09 8.32 16 21 O -0.40 -8.41 9.92 5.46 0.05 -8.36 16 22 N -0.60 -8.40 5.41 -11.72 -0.06 -8.47 16 23 C 0.05 0.66 7.33 -14.99 -0.11 0.55 16 24 C -0.09 -1.11 11.38 -18.64 -0.21 -1.32 16 25 N -0.21 -3.19 11.65 29.69 0.35 -2.84 16 26 N -0.26 -4.39 13.33 60.35 0.80 -3.58 16 27 S 0.36 6.07 21.29 -107.50 -2.29 3.79 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.06 1.40 5.98 -51.93 -0.31 1.09 16 30 H 0.05 1.23 8.03 -51.93 -0.42 0.81 16 31 H 0.11 1.79 8.07 -51.93 -0.42 1.37 16 32 H 0.09 1.38 7.40 -51.93 -0.38 0.99 16 33 H 0.14 1.74 7.80 -52.49 -0.41 1.33 16 34 H 0.13 1.07 8.06 -52.48 -0.42 0.64 16 35 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 36 H 0.15 1.61 8.06 -52.49 -0.42 1.19 16 37 H 0.43 4.68 8.30 -40.82 -0.34 4.34 16 38 H 0.19 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 353.36 15.07 5.33 5.33 Total: -1.00 -30.75 353.36 -6.89 -37.63 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -3.52 Total: 2.88 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: -2.82 Total: 9.48 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: 1.29 Total: -57.35 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: 0.14 Total: -17.63 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 6.07 SS G_CDS: -2.29 Total: 3.79 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.75 -6.89 -37.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321125872.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.280 kcal (2) G-P(sol) polarization free energy of solvation -30.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds