Wall clock time and date at job start Wed Apr 1 2020 04:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00397 * 2 1 4 4 H 1.48500 * 109.47383 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47020 * 300.00283 * 3 2 1 6 6 H 1.48501 * 109.47011 * 59.99742 * 3 2 1 7 7 C 1.37879 * 119.99819 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99881 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00274 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47218 * 179.97438 * 9 7 2 11 11 C 1.46504 * 120.00091 * 95.66378 * 10 9 7 12 12 C 1.50706 * 109.46809 * 89.99813 * 11 10 9 13 13 C 1.38221 * 119.61505 * 95.02496 * 12 11 10 14 14 C 1.38639 * 119.15811 * 179.97438 * 13 12 11 15 15 C 1.38661 * 118.42267 * 0.02562 * 14 13 12 16 16 C 1.38184 * 119.16464 * 0.02562 * 15 14 13 17 17 N 1.31850 * 119.61844 * 275.00200 * 12 11 10 18 18 C 1.34778 * 120.00238 * 275.66304 * 10 9 7 19 19 O 1.21362 * 120.00098 * 185.46170 * 18 10 9 20 20 C 1.49314 * 119.99709 * 5.46386 * 18 10 9 21 21 O 1.21391 * 119.99839 * 5.59000 * 20 18 10 22 22 N 1.34775 * 119.99815 * 185.59288 * 20 18 10 23 23 C 1.39246 * 119.99907 * 179.97438 * 22 20 18 24 24 C 1.35978 * 127.79251 * 180.02562 * 23 22 20 25 25 N 1.31185 * 115.48143 * 179.97438 * 24 23 22 26 26 N 1.28159 * 118.81302 * 359.97438 * 25 24 23 27 27 S 1.69871 * 106.61147 * 359.77284 * 26 25 24 28 28 H 0.96997 * 120.00019 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47108 * 59.99943 * 9 7 2 30 30 H 1.09003 * 109.47010 * 300.00203 * 9 7 2 31 31 H 1.08998 * 109.46997 * 330.00113 * 11 10 9 32 32 H 1.08994 * 109.47557 * 209.99983 * 11 10 9 33 33 H 1.08000 * 120.42681 * 359.95488 * 13 12 11 34 34 H 1.08003 * 120.78200 * 180.02562 * 14 13 12 35 35 H 1.08003 * 120.42312 * 179.97438 * 15 14 13 36 36 H 1.07993 * 119.62326 * 180.27919 * 16 15 14 37 37 H 0.96995 * 120.00032 * 0.02562 * 22 20 18 38 38 H 1.07999 * 122.26012 * 359.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 2.5848 -4.2514 1.2602 12 6 1.6409 -5.3891 1.5531 13 6 1.9835 -6.6747 1.1782 14 6 1.1083 -7.7143 1.4528 15 6 -0.0842 -7.4205 2.0965 16 6 -0.3591 -6.1106 2.4400 17 7 0.4980 -5.1468 2.1643 18 6 2.7276 -4.0496 -1.1639 19 8 3.4380 -5.0334 -1.1771 20 6 2.4346 -3.3231 -2.4350 21 8 1.8091 -2.2831 -2.4094 22 7 2.8647 -3.8220 -3.6108 23 6 2.5911 -3.1448 -4.7963 24 6 2.9448 -3.5008 -6.0601 25 7 2.5578 -2.6796 -7.0070 26 7 1.8937 -1.6324 -6.6831 27 16 1.7207 -1.6704 -4.9937 28 1 -0.4850 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6246 -2.5571 0.8897 31 1 2.5343 -3.5205 2.0672 32 1 3.6020 -4.6347 1.1803 33 1 2.9209 -6.8669 0.6775 34 1 1.3497 -8.7288 1.1720 35 1 -0.7898 -8.2054 2.3257 36 1 -1.2836 -5.8740 2.9455 37 1 3.3642 -4.6532 -3.6313 38 1 3.5064 -4.3991 -6.2701 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321125872.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:10 Heat of formation + Delta-G solvation = 41.072365 kcal Electronic energy + Delta-G solvation = -27680.168254 eV Core-core repulsion = 23650.648844 eV Total energy + Delta-G solvation = -4029.519410 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.25969 -41.27525 -40.94986 -39.71037 -37.55574 -36.22642 -34.66387 -33.36140 -32.78753 -31.82778 -29.43356 -28.58865 -27.45097 -25.54699 -24.66250 -24.28902 -23.09241 -22.62354 -21.26114 -19.66738 -19.06920 -18.69679 -18.32422 -17.79343 -17.58903 -17.16597 -16.91377 -16.77018 -16.47498 -16.24199 -16.09455 -15.57133 -15.31794 -15.14580 -14.42363 -14.29950 -14.15949 -13.92069 -13.69666 -13.47628 -13.09052 -12.94983 -12.92731 -12.80838 -12.73088 -12.61430 -12.40035 -11.95784 -11.71476 -11.18902 -10.78872 -10.68753 -10.66319 -10.48511 -10.32901 -9.95591 -9.85641 -9.66706 -8.12019 -6.19601 -1.02189 -0.22602 0.10181 0.27275 0.41536 0.54946 1.16569 1.28095 1.39713 1.43066 1.51079 2.03747 2.29443 2.47789 2.96986 3.19890 3.23352 3.34737 3.39290 3.60681 3.81410 4.05321 4.19730 4.28025 4.39122 4.43993 4.57646 4.76965 4.78607 4.79811 4.90046 5.23420 5.29172 5.29720 5.40799 5.65626 5.77613 5.83477 6.10031 6.19777 6.41685 6.68154 6.76394 6.89098 7.13314 7.46196 8.96694 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.008629 B = 0.004527 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3243.951084 B = 6184.105654 C = 8581.893365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.026 3.974 3 Si 0.943 3.057 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.278 1.278 7 C -0.513 4.513 8 H 0.051 0.949 9 C 0.257 3.743 10 N -0.552 5.552 11 C 0.165 3.835 12 C 0.088 3.912 13 C -0.153 4.153 14 C -0.079 4.079 15 C -0.163 4.163 16 C 0.078 3.922 17 N -0.506 5.506 18 C 0.519 3.481 19 O -0.537 6.537 20 C 0.476 3.524 21 O -0.438 6.438 22 N -0.582 5.582 23 C 0.050 3.950 24 C -0.060 4.060 25 N -0.216 5.216 26 N -0.273 5.273 27 S 0.309 5.691 28 H 0.262 0.738 29 H 0.033 0.967 30 H 0.023 0.977 31 H 0.091 0.909 32 H 0.113 0.887 33 H 0.147 0.853 34 H 0.168 0.832 35 H 0.169 0.831 36 H 0.170 0.830 37 H 0.447 0.553 38 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.538 -16.917 -1.175 17.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.173 4.173 3 Si 0.770 3.230 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.204 1.204 7 C -0.551 4.551 8 H 0.069 0.931 9 C 0.136 3.864 10 N -0.282 5.282 11 C 0.043 3.957 12 C -0.050 4.050 13 C -0.174 4.174 14 C -0.105 4.105 15 C -0.183 4.183 16 C -0.080 4.080 17 N -0.216 5.216 18 C 0.301 3.699 19 O -0.417 6.417 20 C 0.256 3.744 21 O -0.304 6.304 22 N -0.234 5.234 23 C -0.187 4.187 24 C -0.229 4.229 25 N -0.082 5.082 26 N -0.256 5.256 27 S 0.442 5.558 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.041 0.959 31 H 0.110 0.890 32 H 0.131 0.869 33 H 0.164 0.836 34 H 0.185 0.815 35 H 0.187 0.813 36 H 0.187 0.813 37 H 0.290 0.710 38 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 3.256 -14.148 -1.512 14.597 hybrid contribution 1.181 -1.061 0.326 1.621 sum 4.437 -15.209 -1.186 15.888 Atomic orbital electron populations 1.70021 1.07159 1.27400 1.51362 1.25443 0.95345 1.01684 0.94871 0.85732 0.79149 0.80587 0.77552 1.19300 1.21053 1.20418 1.21355 0.92614 0.91059 1.50099 0.93100 1.19360 0.87197 0.82254 0.97539 1.48095 1.42206 1.32907 1.04973 1.20447 0.96998 0.92904 0.85351 1.21536 0.93073 0.94583 0.95760 1.22226 1.02230 0.92818 1.00110 1.22016 0.92972 1.00582 0.94920 1.22533 0.98571 0.98185 0.98976 1.23221 0.98362 0.89433 0.96957 1.67473 1.03378 1.38394 1.12379 1.19265 0.81906 0.84373 0.84405 1.90666 1.39052 1.25503 1.86444 1.20919 0.81358 0.86463 0.85670 1.91089 1.33674 1.21012 1.84640 1.42324 1.53850 1.26529 1.00651 1.24099 1.02853 1.00227 0.91492 1.23722 1.09435 1.05818 0.83906 1.70893 1.07049 0.99274 1.31008 1.82306 1.21979 1.17059 1.04214 1.86380 1.44517 1.15555 1.09375 0.92888 0.94912 0.95928 0.89037 0.86907 0.83556 0.81457 0.81328 0.81284 0.70956 0.74568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.12 13.29 21.45 0.28 -52.83 16 2 C 0.03 1.43 5.46 84.66 0.46 1.90 16 3 Si 0.94 43.71 29.54 68.60 2.03 45.74 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.51 -26.89 7.66 25.60 0.20 -26.69 16 8 H 0.05 2.66 7.81 -2.91 -0.02 2.64 16 9 C 0.26 12.46 4.76 85.63 0.41 12.86 16 10 N -0.55 -21.57 2.45 -832.23 -2.04 -23.62 16 11 C 0.17 5.53 5.65 85.63 0.48 6.01 16 12 C 0.09 2.76 6.36 42.55 0.27 3.03 16 13 C -0.15 -3.78 9.71 22.36 0.22 -3.56 16 14 C -0.08 -1.49 10.18 22.47 0.23 -1.26 16 15 C -0.16 -3.03 10.11 22.36 0.23 -2.80 16 16 C 0.08 1.95 11.18 84.67 0.95 2.90 16 17 N -0.51 -16.88 10.27 -183.89 -1.89 -18.77 16 18 C 0.52 18.36 7.67 87.23 0.67 19.03 16 19 O -0.54 -17.11 15.86 -3.29 -0.05 -17.16 16 20 C 0.48 16.71 7.65 87.23 0.67 17.38 16 21 O -0.44 -18.98 9.92 -3.37 -0.03 -19.01 16 22 N -0.58 -15.06 5.41 -309.35 -1.67 -16.74 16 23 C 0.05 1.37 7.33 82.99 0.61 1.97 16 24 C -0.06 -1.35 11.38 84.26 0.96 -0.39 16 25 N -0.22 -6.23 11.65 -59.99 -0.70 -6.93 16 26 N -0.27 -9.02 13.33 37.02 0.49 -8.52 16 27 S 0.31 10.45 21.29 -56.49 -1.20 9.24 16 28 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 29 H 0.03 1.76 5.98 -2.39 -0.01 1.74 16 30 H 0.02 1.21 8.03 -2.39 -0.02 1.19 16 31 H 0.09 3.25 8.07 -2.39 -0.02 3.23 16 32 H 0.11 3.23 7.40 -2.39 -0.02 3.21 16 33 H 0.15 3.30 7.80 -2.91 -0.02 3.28 16 34 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 35 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 36 H 0.17 3.44 8.06 -2.91 -0.02 3.42 16 37 H 0.45 8.29 8.30 -92.71 -0.77 7.52 16 38 H 0.24 2.92 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -69.41 353.36 1.93 -67.48 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 0.37 Total: 10.75 kcal Atomic # 6 Polarization: 24.03 SS G_CDS: 6.34 Total: 30.37 kcal Atomic # 7 Polarization: -121.90 SS G_CDS: -5.52 Total: -127.42 kcal Atomic # 8 Polarization: -36.08 SS G_CDS: -0.09 Total: -36.17 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: 10.45 SS G_CDS: -1.20 Total: 9.24 kcal Total: -69.41 1.93 -67.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321125872.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.554 kcal (2) G-P(sol) polarization free energy of solvation -69.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds