Wall clock time and date at job start Wed Apr 1 2020 04:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00037 * 2 1 4 4 H 1.48498 * 109.46970 * 269.99878 * 3 2 1 5 5 H 1.48497 * 109.47243 * 30.00104 * 3 2 1 6 6 H 1.48500 * 109.46962 * 150.00235 * 3 2 1 7 7 C 1.37871 * 119.99709 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00101 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00141 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47197 * 179.97438 * 9 7 2 11 11 C 1.46497 * 119.99963 * 95.65995 * 10 9 7 12 12 C 1.50696 * 109.47278 * 90.00176 * 11 10 9 13 13 C 1.38677 * 120.41701 * 270.25116 * 12 11 10 14 14 C 1.38631 * 118.41800 * 180.24057 * 13 12 11 15 15 C 1.38222 * 119.16067 * 359.75491 * 14 13 12 16 16 N 1.31857 * 120.76801 * 359.97438 * 15 14 13 17 17 C 1.31887 * 121.72397 * 0.02562 * 16 15 14 18 18 C 1.34782 * 120.00251 * 275.65964 * 10 9 7 19 19 O 1.21361 * 120.00413 * 185.45596 * 18 10 9 20 20 C 1.49317 * 119.99590 * 5.45194 * 18 10 9 21 21 O 1.21392 * 119.99944 * 5.59803 * 20 18 10 22 22 N 1.34776 * 119.99710 * 185.59594 * 20 18 10 23 23 C 1.39247 * 119.99823 * 180.02562 * 22 20 18 24 24 C 1.35976 * 127.79468 * 180.02562 * 23 22 20 25 25 N 1.31186 * 115.48468 * 179.97438 * 24 23 22 26 26 N 1.28153 * 118.80920 * 359.97438 * 25 24 23 27 27 S 1.69872 * 106.61600 * 359.73430 * 26 25 24 28 28 H 0.97007 * 119.99836 * 0.02562 * 1 2 3 29 29 H 1.09007 * 109.47083 * 60.00147 * 9 7 2 30 30 H 1.08995 * 109.47180 * 299.99731 * 9 7 2 31 31 H 1.09003 * 109.47173 * 329.99490 * 11 10 9 32 32 H 1.09005 * 109.47137 * 210.00278 * 11 10 9 33 33 H 1.07994 * 120.78900 * 359.96727 * 13 12 11 34 34 H 1.08003 * 120.41512 * 179.72805 * 14 13 12 35 35 H 1.08005 * 119.61621 * 180.02562 * 15 14 13 36 36 H 1.07992 * 119.61658 * 179.97438 * 17 16 15 37 37 H 0.96997 * 120.00208 * 359.97438 * 22 20 18 38 38 H 1.08007 * 122.25730 * 0.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0017 10 7 2.2029 -3.6127 0.0015 11 6 2.5847 -4.2502 1.2640 12 6 1.6409 -5.3876 1.5580 13 6 0.4812 -5.1674 2.2858 14 6 -0.3549 -6.2444 2.5366 15 6 -0.0098 -7.4920 2.0519 16 7 1.0986 -7.6634 1.3586 17 6 1.9173 -6.6621 1.1010 18 6 2.7274 -4.0507 -1.1603 19 8 3.4379 -5.0345 -1.1726 20 6 2.4342 -3.3255 -2.4321 21 8 1.8086 -2.2854 -2.4075 22 7 2.8642 -3.8256 -3.6075 23 6 2.5912 -3.1490 -4.7936 24 6 2.9449 -3.5062 -6.0570 25 7 2.5586 -2.6854 -7.0046 26 7 1.8952 -1.6376 -6.6816 27 16 1.7209 -1.6747 -4.9922 28 1 -0.4850 0.8401 -0.0004 29 1 0.6239 -2.5575 -0.8881 30 1 0.6246 -2.5563 0.8919 31 1 2.5343 -3.5185 2.0703 32 1 3.6020 -4.6335 1.1844 33 1 0.2374 -4.1812 2.6523 34 1 -1.2641 -6.1103 3.1039 35 1 -0.6561 -8.3361 2.2426 36 1 2.8163 -6.8411 0.5302 37 1 3.3644 -4.6564 -3.6272 38 1 3.5053 -4.4055 -6.2663 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321935899.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:55 Heat of formation + Delta-G solvation = 59.071569 kcal Electronic energy + Delta-G solvation = -27681.527886 eV Core-core repulsion = 23652.788980 eV Total energy + Delta-G solvation = -4028.738906 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.91600 -40.15295 -39.80505 -38.38035 -36.20264 -34.96475 -33.07555 -32.24363 -31.49997 -30.62194 -27.76426 -27.16279 -26.12756 -24.09275 -23.53360 -22.86486 -21.97343 -21.44777 -19.95526 -18.38276 -17.73547 -17.14652 -16.95268 -16.76518 -16.40896 -15.90431 -15.71776 -15.38204 -15.25957 -14.78403 -14.61074 -14.32362 -13.96913 -13.78898 -13.35015 -13.02716 -12.95446 -12.50650 -12.31062 -12.07726 -11.95594 -11.63616 -11.58003 -11.54291 -11.21963 -10.96415 -10.75712 -10.22169 -10.01057 -9.87843 -9.72740 -9.42738 -9.41324 -9.21507 -8.89642 -8.67354 -8.50354 -8.20122 -6.20165 -4.23406 0.22440 0.96713 1.11293 1.36254 1.63420 1.78439 2.41881 2.44274 3.22128 3.29260 3.30156 3.42714 3.62634 4.00224 4.30407 4.45967 4.50665 4.62050 4.67132 4.89066 4.94999 5.07497 5.13017 5.17339 5.42027 5.46789 5.69380 5.83893 5.89839 5.90581 6.17987 6.28191 6.37884 6.72693 6.77698 7.03220 7.11180 7.62147 7.69693 7.80861 7.87157 7.96983 8.03258 8.21916 8.75010 9.40536 10.88457 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.008610 B = 0.004519 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3251.319840 B = 6194.962645 C = 8615.969040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.074 3.926 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.231 3.769 10 N -0.550 5.550 11 C 0.160 3.840 12 C -0.153 4.153 13 C -0.055 4.055 14 C -0.178 4.178 15 C 0.093 3.907 16 N -0.492 5.492 17 C 0.119 3.881 18 C 0.519 3.481 19 O -0.549 6.549 20 C 0.474 3.526 21 O -0.400 6.400 22 N -0.603 5.603 23 C 0.045 3.955 24 C -0.086 4.086 25 N -0.207 5.207 26 N -0.262 5.262 27 S 0.362 5.638 28 H 0.264 0.736 29 H 0.058 0.942 30 H 0.037 0.963 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.139 0.861 34 H 0.133 0.867 35 H 0.151 0.849 36 H 0.160 0.840 37 H 0.430 0.570 38 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.303 -10.253 0.567 10.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.130 4.130 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.558 4.558 8 H 0.074 0.926 9 C 0.113 3.887 10 N -0.280 5.280 11 C 0.037 3.963 12 C -0.156 4.156 13 C -0.082 4.082 14 C -0.198 4.198 15 C -0.064 4.064 16 N -0.200 5.200 17 C -0.039 4.039 18 C 0.300 3.700 19 O -0.429 6.429 20 C 0.254 3.746 21 O -0.264 6.264 22 N -0.253 5.253 23 C -0.191 4.191 24 C -0.255 4.255 25 N -0.073 5.073 26 N -0.245 5.245 27 S 0.495 5.505 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.118 0.882 32 H 0.109 0.891 33 H 0.157 0.843 34 H 0.151 0.849 35 H 0.169 0.831 36 H 0.177 0.823 37 H 0.270 0.730 38 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 1.376 -9.146 -0.295 9.254 hybrid contribution 1.155 0.119 0.763 1.389 sum 2.531 -9.027 0.468 9.387 Atomic orbital electron populations 1.69897 1.05921 1.27182 1.49482 1.24773 0.94741 0.98877 0.94589 0.86609 0.79758 0.83327 0.78448 1.20339 1.21090 1.19977 1.21131 0.92934 0.89948 1.51787 0.92557 1.19953 0.87273 0.81954 0.99530 1.48289 1.42545 1.33421 1.03696 1.20346 0.96898 0.92546 0.86553 1.21314 0.97763 0.96784 0.99739 1.21664 0.92378 0.99609 0.94506 1.22131 1.01148 0.94048 1.02452 1.22749 0.93581 0.96539 0.93539 1.67732 1.04243 1.34768 1.13297 1.22867 0.98094 0.87847 0.95048 1.19236 0.81947 0.84250 0.84560 1.90683 1.39578 1.26110 1.86538 1.20900 0.81868 0.86920 0.84879 1.91075 1.31887 1.19351 1.84070 1.42614 1.54559 1.26365 1.01800 1.24132 1.02878 1.01212 0.90912 1.23149 1.11293 1.05628 0.85422 1.70901 1.07066 0.99174 1.30191 1.82228 1.21119 1.16203 1.04920 1.86105 1.42945 1.13043 1.08455 0.92586 0.92392 0.94503 0.88168 0.89081 0.84324 0.84892 0.83138 0.82269 0.72996 0.79277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.59 13.29 55.43 0.74 -22.86 16 2 C 0.07 1.87 5.46 -17.82 -0.10 1.78 16 3 Si 0.89 20.18 29.54 -169.99 -5.02 15.16 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.52 -12.58 7.66 -34.44 -0.26 -12.84 16 8 H 0.06 1.39 7.81 -52.49 -0.41 0.98 16 9 C 0.23 4.99 4.76 -5.19 -0.02 4.97 16 10 N -0.55 -9.86 2.45 -176.99 -0.43 -10.30 16 11 C 0.16 2.37 5.49 -5.20 -0.03 2.34 16 12 C -0.15 -2.16 5.48 -104.48 -0.57 -2.74 16 13 C -0.06 -0.72 9.86 -39.27 -0.39 -1.11 16 14 C -0.18 -2.06 10.11 -39.44 -0.40 -2.46 16 15 C 0.09 1.13 11.18 -17.55 -0.20 0.93 16 16 N -0.49 -7.12 10.36 -13.25 -0.14 -7.26 16 17 C 0.12 1.72 10.74 -17.55 -0.19 1.53 16 18 C 0.52 9.03 7.67 -11.65 -0.09 8.94 16 19 O -0.55 -9.19 15.34 5.49 0.08 -9.11 16 20 C 0.47 8.21 7.65 -11.65 -0.09 8.12 16 21 O -0.40 -8.22 9.93 5.46 0.05 -8.17 16 22 N -0.60 -8.30 5.41 -11.72 -0.06 -8.36 16 23 C 0.05 0.65 7.33 -14.99 -0.11 0.54 16 24 C -0.09 -1.10 11.38 -18.64 -0.21 -1.31 16 25 N -0.21 -3.17 11.65 29.69 0.35 -2.82 16 26 N -0.26 -4.34 13.33 60.35 0.80 -3.54 16 27 S 0.36 5.98 21.29 -107.50 -2.29 3.69 16 28 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 29 H 0.06 1.39 5.98 -51.93 -0.31 1.08 16 30 H 0.04 0.82 8.03 -51.93 -0.42 0.40 16 31 H 0.10 1.42 8.03 -51.93 -0.42 1.00 16 32 H 0.09 1.26 7.46 -51.93 -0.39 0.87 16 33 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 34 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 35 H 0.15 1.36 8.06 -52.48 -0.42 0.94 16 36 H 0.16 2.26 7.39 -52.49 -0.39 1.87 16 37 H 0.43 4.68 8.30 -40.82 -0.34 4.34 16 38 H 0.19 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 352.21 15.07 5.31 5.31 Total: -1.00 -29.29 352.21 -6.76 -36.05 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -3.49 Total: 3.53 kcal Atomic # 6 Polarization: 11.33 SS G_CDS: -2.66 Total: 8.67 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: 1.25 Total: -55.14 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: 0.14 Total: -17.27 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 16 Polarization: 5.98 SS G_CDS: -2.29 Total: 3.69 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.29 -6.76 -36.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321935899.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.124 kcal (2) G-P(sol) polarization free energy of solvation -29.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds