Wall clock time and date at job start Wed Apr 1 2020 04:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00037 * 2 1 4 4 H 1.48498 * 109.46970 * 269.99878 * 3 2 1 5 5 H 1.48497 * 109.47243 * 30.00104 * 3 2 1 6 6 H 1.48500 * 109.46962 * 150.00235 * 3 2 1 7 7 C 1.37871 * 119.99709 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00101 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00141 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47197 * 179.97438 * 9 7 2 11 11 C 1.46497 * 119.99963 * 95.65995 * 10 9 7 12 12 C 1.50696 * 109.47278 * 90.00176 * 11 10 9 13 13 C 1.38677 * 120.41701 * 270.25116 * 12 11 10 14 14 C 1.38631 * 118.41800 * 180.24057 * 13 12 11 15 15 C 1.38222 * 119.16067 * 359.75491 * 14 13 12 16 16 N 1.31857 * 120.76801 * 359.97438 * 15 14 13 17 17 C 1.31887 * 121.72397 * 0.02562 * 16 15 14 18 18 C 1.34782 * 120.00251 * 275.65964 * 10 9 7 19 19 O 1.21361 * 120.00413 * 185.45596 * 18 10 9 20 20 C 1.49317 * 119.99590 * 5.45194 * 18 10 9 21 21 O 1.21392 * 119.99944 * 5.59803 * 20 18 10 22 22 N 1.34776 * 119.99710 * 185.59594 * 20 18 10 23 23 C 1.39247 * 119.99823 * 180.02562 * 22 20 18 24 24 C 1.35976 * 127.79468 * 180.02562 * 23 22 20 25 25 N 1.31186 * 115.48468 * 179.97438 * 24 23 22 26 26 N 1.28153 * 118.80920 * 359.97438 * 25 24 23 27 27 S 1.69872 * 106.61600 * 359.73430 * 26 25 24 28 28 H 0.97007 * 119.99836 * 0.02562 * 1 2 3 29 29 H 1.09007 * 109.47083 * 60.00147 * 9 7 2 30 30 H 1.08995 * 109.47180 * 299.99731 * 9 7 2 31 31 H 1.09003 * 109.47173 * 329.99490 * 11 10 9 32 32 H 1.09005 * 109.47137 * 210.00278 * 11 10 9 33 33 H 1.07994 * 120.78900 * 359.96727 * 13 12 11 34 34 H 1.08003 * 120.41512 * 179.72805 * 14 13 12 35 35 H 1.08005 * 119.61621 * 180.02562 * 15 14 13 36 36 H 1.07992 * 119.61658 * 179.97438 * 17 16 15 37 37 H 0.96997 * 120.00208 * 359.97438 * 22 20 18 38 38 H 1.08007 * 122.25730 * 0.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0017 10 7 2.2029 -3.6127 0.0015 11 6 2.5847 -4.2502 1.2640 12 6 1.6409 -5.3876 1.5580 13 6 0.4812 -5.1674 2.2858 14 6 -0.3549 -6.2444 2.5366 15 6 -0.0098 -7.4920 2.0519 16 7 1.0986 -7.6634 1.3586 17 6 1.9173 -6.6621 1.1010 18 6 2.7274 -4.0507 -1.1603 19 8 3.4379 -5.0345 -1.1726 20 6 2.4342 -3.3255 -2.4321 21 8 1.8086 -2.2854 -2.4075 22 7 2.8642 -3.8256 -3.6075 23 6 2.5912 -3.1490 -4.7936 24 6 2.9449 -3.5062 -6.0570 25 7 2.5586 -2.6854 -7.0046 26 7 1.8952 -1.6376 -6.6816 27 16 1.7209 -1.6747 -4.9922 28 1 -0.4850 0.8401 -0.0004 29 1 0.6239 -2.5575 -0.8881 30 1 0.6246 -2.5563 0.8919 31 1 2.5343 -3.5185 2.0703 32 1 3.6020 -4.6335 1.1844 33 1 0.2374 -4.1812 2.6523 34 1 -1.2641 -6.1103 3.1039 35 1 -0.6561 -8.3361 2.2426 36 1 2.8163 -6.8411 0.5302 37 1 3.3644 -4.6564 -3.6272 38 1 3.5053 -4.4055 -6.2663 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321935899.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:55 Heat of formation + Delta-G solvation = 39.475375 kcal Electronic energy + Delta-G solvation = -27682.377640 eV Core-core repulsion = 23652.788980 eV Total energy + Delta-G solvation = -4029.588661 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.25578 -41.27917 -40.95462 -39.72292 -37.59966 -36.28234 -34.75566 -33.49651 -32.60485 -31.82941 -29.37481 -28.48560 -27.37811 -25.53772 -24.73165 -24.27889 -23.09949 -22.62405 -21.23495 -19.66410 -19.07124 -18.67300 -18.31372 -17.97222 -17.61122 -17.21012 -16.98695 -16.78557 -16.47517 -16.24265 -15.96643 -15.56931 -15.24357 -15.05025 -14.54080 -14.30747 -14.16166 -13.97619 -13.68218 -13.48440 -13.18654 -13.07559 -12.92795 -12.82037 -12.72150 -12.50734 -12.42257 -11.96417 -11.72831 -11.20081 -10.80132 -10.68644 -10.63736 -10.50000 -10.36473 -9.96763 -9.86089 -9.67150 -8.13005 -6.19583 -1.02498 -0.23205 0.08546 0.28046 0.34629 0.54737 1.17702 1.27702 1.40738 1.45170 1.50126 2.05137 2.31858 2.48473 2.93808 3.20669 3.23035 3.34375 3.54938 3.59914 3.87665 3.88742 4.10202 4.10780 4.39397 4.45193 4.65823 4.71722 4.77091 4.78378 4.89287 5.20957 5.27674 5.34237 5.42427 5.65699 5.77052 5.79259 6.09596 6.18769 6.42283 6.67780 6.77155 6.89676 7.02500 7.46653 8.94917 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.008610 B = 0.004519 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3251.319840 B = 6194.962645 C = 8615.969040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.031 3.969 3 Si 0.937 3.063 4 H -0.285 1.285 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.513 4.513 8 H 0.050 0.950 9 C 0.251 3.749 10 N -0.555 5.555 11 C 0.160 3.840 12 C -0.162 4.162 13 C -0.067 4.067 14 C -0.171 4.171 15 C 0.091 3.909 16 N -0.513 5.513 17 C 0.109 3.891 18 C 0.518 3.482 19 O -0.539 6.539 20 C 0.475 3.525 21 O -0.438 6.438 22 N -0.583 5.583 23 C 0.050 3.950 24 C -0.061 4.061 25 N -0.217 5.217 26 N -0.274 5.274 27 S 0.312 5.688 28 H 0.262 0.738 29 H 0.036 0.964 30 H 0.030 0.970 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.141 0.859 34 H 0.164 0.836 35 H 0.183 0.817 36 H 0.157 0.843 37 H 0.446 0.554 38 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.037 -11.998 0.735 12.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.169 4.169 3 Si 0.764 3.236 4 H -0.211 1.211 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.552 4.552 8 H 0.068 0.932 9 C 0.131 3.869 10 N -0.284 5.284 11 C 0.038 3.962 12 C -0.165 4.165 13 C -0.093 4.093 14 C -0.191 4.191 15 C -0.066 4.066 16 N -0.222 5.222 17 C -0.048 4.048 18 C 0.300 3.700 19 O -0.419 6.419 20 C 0.256 3.744 21 O -0.304 6.304 22 N -0.235 5.235 23 C -0.187 4.187 24 C -0.230 4.230 25 N -0.082 5.082 26 N -0.256 5.256 27 S 0.445 5.555 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.122 0.878 32 H 0.119 0.881 33 H 0.159 0.841 34 H 0.181 0.819 35 H 0.200 0.800 36 H 0.174 0.826 37 H 0.290 0.710 38 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 2.156 -10.929 -0.146 11.141 hybrid contribution 0.960 0.496 0.668 1.270 sum 3.116 -10.433 0.522 10.901 Atomic orbital electron populations 1.69982 1.06948 1.27474 1.51277 1.25353 0.95290 1.01368 0.94911 0.85876 0.79127 0.80709 0.77880 1.21116 1.20855 1.19182 1.21321 0.92639 0.91059 1.50138 0.93214 1.19436 0.87273 0.82200 0.97950 1.48185 1.42272 1.32931 1.05023 1.20469 0.97639 0.92818 0.85288 1.21208 0.98215 0.96358 1.00683 1.21849 0.92474 1.00408 0.94583 1.22464 1.01631 0.93234 1.01723 1.23324 0.93068 0.97856 0.92349 1.67745 1.05213 1.34951 1.14267 1.22829 0.98368 0.88056 0.95537 1.19269 0.81907 0.84306 0.84540 1.90685 1.39121 1.25638 1.86468 1.20969 0.81322 0.86450 0.85675 1.91082 1.33715 1.20938 1.84675 1.42366 1.53839 1.26543 1.00762 1.24101 1.02835 1.00264 0.91482 1.23716 1.09501 1.05817 0.83991 1.70894 1.07077 0.99270 1.30992 1.82298 1.21995 1.17030 1.04289 1.86323 1.44458 1.15437 1.09325 0.92854 0.94651 0.95226 0.87847 0.88103 0.84144 0.81880 0.79975 0.82610 0.71040 0.74710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.72 13.29 21.45 0.28 -49.43 16 2 C 0.03 1.59 5.46 84.65 0.46 2.05 16 3 Si 0.94 41.68 29.54 68.60 2.03 43.71 16 4 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.51 -25.05 7.66 25.60 0.20 -24.85 16 8 H 0.05 2.45 7.81 -2.91 -0.02 2.43 16 9 C 0.25 11.00 4.76 85.63 0.41 11.41 16 10 N -0.55 -19.75 2.45 -832.23 -2.04 -21.79 16 11 C 0.16 4.65 5.49 85.63 0.47 5.12 16 12 C -0.16 -4.45 5.48 -19.77 -0.11 -4.56 16 13 C -0.07 -1.68 9.86 22.47 0.22 -1.46 16 14 C -0.17 -3.57 10.11 22.36 0.23 -3.34 16 15 C 0.09 1.98 11.18 84.69 0.95 2.93 16 16 N -0.51 -14.06 10.36 -195.84 -2.03 -16.09 16 17 C 0.11 3.05 10.74 84.67 0.91 3.96 16 18 C 0.52 17.65 7.67 87.23 0.67 18.32 16 19 O -0.54 -17.23 15.34 -3.28 -0.05 -17.28 16 20 C 0.48 16.22 7.65 87.23 0.67 16.89 16 21 O -0.44 -18.26 9.93 -3.38 -0.03 -18.29 16 22 N -0.58 -15.06 5.41 -309.34 -1.67 -16.73 16 23 C 0.05 1.36 7.33 82.99 0.61 1.97 16 24 C -0.06 -1.40 11.38 84.26 0.96 -0.44 16 25 N -0.22 -6.26 11.65 -59.99 -0.70 -6.96 16 26 N -0.27 -8.99 13.33 37.02 0.49 -8.50 16 27 S 0.31 10.39 21.29 -56.49 -1.20 9.19 16 28 H 0.26 13.74 8.31 -92.70 -0.77 12.97 16 29 H 0.04 1.74 5.98 -2.38 -0.01 1.73 16 30 H 0.03 1.34 8.03 -2.39 -0.02 1.32 16 31 H 0.10 2.90 8.03 -2.39 -0.02 2.88 16 32 H 0.10 2.70 7.46 -2.38 -0.02 2.68 16 33 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 34 H 0.16 2.36 8.06 -2.91 -0.02 2.33 16 35 H 0.18 2.68 8.06 -2.91 -0.02 2.65 16 36 H 0.16 4.32 7.39 -2.91 -0.02 4.29 16 37 H 0.45 8.49 8.30 -92.71 -0.77 7.72 16 38 H 0.24 3.03 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -63.44 352.21 2.08 -61.36 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 0.37 Total: 12.81 kcal Atomic # 6 Polarization: 21.36 SS G_CDS: 6.64 Total: 27.99 kcal Atomic # 7 Polarization: -113.84 SS G_CDS: -5.66 Total: -119.50 kcal Atomic # 8 Polarization: -35.48 SS G_CDS: -0.08 Total: -35.57 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Atomic # 16 Polarization: 10.39 SS G_CDS: -1.20 Total: 9.19 kcal Total: -63.44 2.08 -61.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321935899.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.838 kcal (2) G-P(sol) polarization free energy of solvation -63.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds