Wall clock time and date at job start Wed Apr 1 2020 04:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31286 * 1 3 3 Si 1.86794 * 119.99698 * 2 1 4 4 H 1.48505 * 109.47305 * 269.99223 * 3 2 1 5 5 H 1.48498 * 109.47752 * 29.99554 * 3 2 1 6 6 H 1.48508 * 109.47148 * 149.99866 * 3 2 1 7 7 C 1.39011 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99527 * 180.02562 * 7 2 1 9 9 N 1.37288 * 119.99916 * 0.02562 * 7 2 1 10 10 C 1.36445 * 126.05741 * 179.97438 * 9 7 2 11 11 C 1.35780 * 107.50127 * 180.02562 * 10 9 7 12 12 N 1.40304 * 126.09673 * 179.97438 * 11 10 9 13 13 C 1.34781 * 120.00140 * 180.02562 * 12 11 10 14 14 O 1.21433 * 119.99315 * 359.97438 * 13 12 11 15 15 C 1.49124 * 120.00306 * 180.02562 * 13 12 11 16 16 O 1.21433 * 119.99905 * 359.97438 * 15 13 12 17 17 N 1.34777 * 119.99729 * 179.97438 * 15 13 12 18 18 C 1.39436 * 119.99466 * 179.71893 * 17 15 13 19 19 S 1.76196 * 126.08123 * 0.30854 * 18 17 15 20 20 C 1.70951 * 90.33191 * 179.97438 * 19 18 17 21 21 N 1.28971 * 110.32966 * 0.02562 * 20 19 18 22 22 C 1.31786 * 117.20502 * 359.70935 * 21 20 19 23 23 C 1.50700 * 122.85702 * 180.31160 * 22 21 20 24 24 C 1.52997 * 117.49950 * 8.85209 * 23 22 21 25 25 C 1.53002 * 117.49908 * 300.22798 * 23 22 21 26 26 C 1.40713 * 107.80352 * 0.23132 * 11 10 9 27 27 N 1.30887 * 108.37356 * 359.60989 * 26 11 10 28 28 H 0.96993 * 120.00063 * 0.02562 * 1 2 3 29 29 H 1.08005 * 126.24688 * 0.02704 * 10 9 7 30 30 H 0.97000 * 120.00546 * 359.97438 * 12 11 10 31 31 H 0.97001 * 120.00485 * 0.02562 * 17 15 13 32 32 H 1.07995 * 124.83290 * 180.02562 * 20 19 18 33 33 H 1.09000 * 115.55274 * 154.55980 * 23 22 21 34 34 H 1.09006 * 117.49728 * 359.97438 * 24 23 22 35 35 H 1.09004 * 117.50169 * 145.02187 * 24 23 22 36 36 H 1.09000 * 117.50316 * 214.97474 * 25 23 22 37 37 H 1.09002 * 117.49743 * 359.97438 * 25 23 22 38 38 H 1.08003 * 125.81461 * 179.73516 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2467 1.6177 0.0000 4 1 2.4944 2.0464 -1.4001 5 1 1.4442 2.6528 0.6999 6 1 3.5444 1.4402 0.7001 7 6 2.0079 -1.2039 0.0005 8 1 3.0880 -1.2038 0.0010 9 7 1.3215 -2.3928 0.0005 10 6 1.8752 -3.6399 0.0005 11 6 0.8574 -4.5386 0.0000 12 7 0.9881 -5.9355 -0.0007 13 6 -0.1112 -6.7153 -0.0018 14 8 -1.2148 -6.2086 -0.0017 15 6 0.0277 -8.2000 -0.0020 16 8 1.1313 -8.7066 -0.0016 17 7 -1.0717 -8.9796 -0.0025 18 6 -0.9418 -10.3679 -0.0086 19 16 0.5727 -11.2684 -0.0084 20 6 -0.2924 -12.7428 -0.0170 21 7 -1.5622 -12.5172 -0.0200 22 6 -1.9505 -11.2579 -0.0101 23 6 -3.4011 -10.8495 -0.0052 24 6 -4.4442 -11.9504 0.1967 25 6 -4.2677 -11.3070 -1.1802 26 6 -0.3519 -3.8190 -0.0058 27 7 -0.0713 -2.5406 -0.0001 28 1 -0.4850 0.8400 -0.0004 29 1 2.9304 -3.8700 0.0009 30 1 1.8696 -6.3402 -0.0012 31 1 -1.9533 -8.5750 -0.0031 32 1 0.1600 -13.7234 -0.0196 33 1 -3.6125 -9.8705 0.4247 34 1 -4.0813 -12.9701 0.3257 35 1 -5.3421 -11.6958 0.7598 36 1 -5.0496 -10.6292 -1.5229 37 1 -3.7886 -11.9030 -1.9569 38 1 -1.3428 -4.2485 -0.0117 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325146568.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:33 Heat of formation + Delta-G solvation = 77.597947 kcal Electronic energy + Delta-G solvation = -26212.160236 eV Core-core repulsion = 22184.224694 eV Total energy + Delta-G solvation = -4027.935542 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.32474 -41.54683 -40.92432 -39.63181 -37.39667 -36.82019 -35.85466 -34.99351 -32.32036 -30.75637 -29.88395 -27.49524 -26.57750 -25.22027 -24.06947 -23.20341 -23.00147 -22.21743 -21.35117 -20.84962 -19.75640 -19.35731 -18.81274 -17.78871 -17.58757 -17.41743 -17.34372 -16.78848 -16.24952 -15.96887 -15.78861 -15.43984 -15.37172 -15.19955 -14.90396 -14.88487 -14.78019 -13.53111 -13.43034 -13.35810 -13.03229 -12.92692 -12.74392 -12.59228 -12.39242 -12.34576 -12.09722 -12.02506 -11.71835 -11.30975 -11.09329 -10.94769 -10.85115 -10.49997 -10.16032 -10.02292 -9.18067 -8.66230 -8.49973 -6.27923 -0.56792 0.05338 0.24250 0.67011 1.12274 1.26826 1.41544 1.57434 1.58959 1.73948 1.95002 2.09520 2.40911 2.45895 2.81095 2.99695 3.06952 3.28851 3.34200 3.67326 3.92020 4.12408 4.25354 4.37735 4.40840 4.49744 4.59432 4.80176 4.90195 4.91783 4.96919 5.10551 5.14344 5.20053 5.27047 5.31733 5.56192 5.90233 6.12450 6.28086 6.45579 6.66465 6.71192 6.93794 7.39455 7.61025 8.49033 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.025964 B = 0.002035 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.164067 B =13753.945705 C =14753.621139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C -0.005 4.005 3 Si 1.019 2.981 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.245 1.245 7 C -0.352 4.352 8 H 0.143 0.857 9 N -0.162 5.162 10 C -0.071 4.071 11 C -0.058 4.058 12 N -0.573 5.573 13 C 0.497 3.503 14 O -0.536 6.536 15 C 0.517 3.483 16 O -0.500 6.500 17 N -0.588 5.588 18 C -0.031 4.031 19 S 0.237 5.763 20 C -0.020 4.020 21 N -0.469 5.469 22 C 0.054 3.946 23 C -0.113 4.113 24 C -0.149 4.149 25 C -0.158 4.158 26 C -0.046 4.046 27 N -0.308 5.308 28 H 0.278 0.722 29 H 0.190 0.810 30 H 0.426 0.574 31 H 0.436 0.564 32 H 0.234 0.766 33 H 0.125 0.875 34 H 0.097 0.903 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.087 0.913 38 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.092 -22.062 -0.264 22.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.217 4.217 3 Si 0.837 3.163 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.168 1.168 7 C -0.483 4.483 8 H 0.160 0.840 9 N 0.070 4.930 10 C -0.222 4.222 11 C -0.165 4.165 12 N -0.217 5.217 13 C 0.278 3.722 14 O -0.414 6.414 15 C 0.299 3.701 16 O -0.375 6.375 17 N -0.235 5.235 18 C -0.248 4.248 19 S 0.489 5.511 20 C -0.317 4.317 21 N -0.182 5.182 22 C -0.082 4.082 23 C -0.134 4.134 24 C -0.186 4.186 25 C -0.195 4.195 26 C -0.221 4.221 27 N -0.140 5.140 28 H 0.088 0.912 29 H 0.207 0.793 30 H 0.264 0.736 31 H 0.278 0.722 32 H 0.250 0.750 33 H 0.142 0.858 34 H 0.115 0.885 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.106 0.894 38 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.180 -20.916 -0.251 20.918 hybrid contribution -0.492 0.140 0.000 0.511 sum -0.311 -20.775 -0.251 20.779 Atomic orbital electron populations 1.70367 1.08363 1.29302 1.36725 1.26874 0.96490 1.04307 0.94044 0.84595 0.78334 0.74084 0.79252 1.18907 1.20205 1.16756 1.20660 0.93068 0.80753 1.53805 0.83995 1.44853 1.03748 1.04791 1.39609 1.22020 0.98910 0.84089 1.17219 1.17216 0.93481 0.82163 1.23600 1.41962 1.09585 1.03038 1.67158 1.19477 0.84994 0.86824 0.80911 1.90697 1.26166 1.74563 1.49980 1.20010 0.84538 0.87878 0.77712 1.90717 1.25130 1.74256 1.47404 1.42222 1.11078 1.01864 1.68345 1.23525 0.99672 0.87597 1.14016 1.84877 1.03633 0.95634 1.66954 1.29093 0.92204 1.06070 1.04338 1.66118 1.16709 1.19504 1.15863 1.19441 0.95451 0.86392 1.06965 1.20560 0.85391 1.00508 1.06898 1.22960 0.99023 0.97434 0.99232 1.23027 1.01444 1.03521 0.91541 1.24285 0.98982 0.90788 1.08091 1.78186 0.91857 1.16490 1.27445 0.91221 0.79308 0.73556 0.72231 0.74971 0.85761 0.88474 0.86891 0.86733 0.89438 0.80607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.77 11.81 21.67 0.26 -45.51 16 2 C 0.00 -0.24 5.50 84.96 0.47 0.22 16 3 Si 1.02 37.26 29.55 68.60 2.03 39.29 16 4 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 5 H -0.28 -10.08 7.11 99.48 0.71 -9.37 16 6 H -0.24 -8.11 7.11 99.48 0.71 -7.41 16 7 C -0.35 -17.93 10.25 84.02 0.86 -17.07 16 8 H 0.14 6.24 7.83 -2.91 -0.02 6.22 16 9 N -0.16 -8.66 3.73 -189.98 -0.71 -9.37 16 10 C -0.07 -3.15 11.50 83.41 0.96 -2.20 16 11 C -0.06 -2.54 6.90 37.82 0.26 -2.28 16 12 N -0.57 -19.40 5.45 -305.48 -1.66 -21.07 16 13 C 0.50 16.29 7.85 87.17 0.68 16.97 16 14 O -0.54 -20.24 13.62 -3.51 -0.05 -20.29 16 15 C 0.52 13.99 7.84 87.17 0.68 14.67 16 16 O -0.50 -13.73 14.09 -3.51 -0.05 -13.78 16 17 N -0.59 -13.79 5.39 -307.46 -1.66 -15.45 16 18 C -0.03 -0.70 7.18 82.63 0.59 -0.10 16 19 S 0.24 4.54 20.45 -56.49 -1.16 3.39 16 20 C -0.02 -0.32 12.21 130.66 1.60 1.28 16 21 N -0.47 -9.72 9.83 -190.99 -1.88 -11.59 16 22 C 0.05 1.15 6.40 41.71 0.27 1.42 16 23 C -0.11 -2.05 5.82 -11.54 -0.07 -2.12 16 24 C -0.15 -2.33 10.09 30.59 0.31 -2.02 16 25 C -0.16 -2.49 10.23 30.60 0.31 -2.18 16 26 C -0.05 -2.35 10.85 85.44 0.93 -1.42 16 27 N -0.31 -17.77 10.39 -56.43 -0.59 -18.35 16 28 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 29 H 0.19 6.57 8.06 -2.91 -0.02 6.55 16 30 H 0.43 11.72 8.29 -92.71 -0.77 10.95 16 31 H 0.44 9.27 7.17 -92.71 -0.67 8.60 16 32 H 0.23 1.80 8.06 -2.91 -0.02 1.78 16 33 H 0.12 2.01 7.40 -2.39 -0.02 1.99 16 34 H 0.10 1.70 7.74 -2.38 -0.02 1.68 16 35 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 36 H 0.11 1.45 8.14 -2.39 -0.02 1.44 16 37 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.18 8.78 5.92 -2.91 -0.02 8.76 16 Total: -1.00 -70.79 351.43 2.12 -68.67 By element: Atomic # 1 Polarization: 39.16 SS G_CDS: -0.26 Total: 38.89 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: 7.85 Total: 5.18 kcal Atomic # 7 Polarization: -115.10 SS G_CDS: -6.24 Total: -121.34 kcal Atomic # 8 Polarization: -33.98 SS G_CDS: -0.10 Total: -34.07 kcal Atomic # 14 Polarization: 37.26 SS G_CDS: 2.03 Total: 39.29 kcal Atomic # 16 Polarization: 4.54 SS G_CDS: -1.16 Total: 3.39 kcal Total: -70.79 2.12 -68.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325146568.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.265 kcal (2) G-P(sol) polarization free energy of solvation -70.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds