Wall clock time and date at job start Wed Apr 1 2020 04:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86803 * 119.99857 * 2 1 4 4 H 1.48499 * 109.46995 * 239.72758 * 3 2 1 5 5 H 1.48508 * 109.46870 * 359.72506 * 3 2 1 6 6 H 1.48491 * 109.47153 * 119.72726 * 3 2 1 7 7 C 1.39952 * 120.00349 * 179.72877 * 2 1 3 8 8 H 1.08000 * 119.99914 * 207.11140 * 7 2 1 9 9 C 1.41388 * 119.99848 * 27.10862 * 7 2 1 10 10 C 1.40720 * 120.24471 * 204.85386 * 9 7 2 11 11 C 1.37614 * 119.74342 * 179.67460 * 10 9 7 12 12 C 1.38632 * 120.25054 * 0.62763 * 11 10 9 13 13 S 1.76199 * 119.74951 * 179.69379 * 12 11 10 14 14 O 1.42092 * 106.40572 * 23.51581 * 13 12 11 15 15 O 1.42097 * 106.40255 * 156.44145 * 13 12 11 16 16 N 1.65605 * 107.21541 * 269.97741 * 13 12 11 17 17 C 1.46500 * 120.00184 * 65.00392 * 16 13 12 18 18 C 1.52992 * 109.47236 * 164.99907 * 17 16 13 19 19 O 1.42901 * 109.47384 * 64.99477 * 18 17 16 20 20 C 1.42902 * 114.00026 * 179.97438 * 19 18 17 21 21 H 1.09003 * 115.54983 * 4.34156 * 20 19 18 22 22 C 1.53001 * 117.49313 * 150.00109 * 20 19 18 23 23 C 1.52995 * 117.50283 * 218.62454 * 20 19 18 24 24 F 1.39905 * 117.49679 * 0.02562 * 23 20 19 25 25 F 1.39895 * 117.50281 * 145.02421 * 23 20 19 26 26 C 1.38632 * 120.50180 * 359.67281 * 12 11 10 27 27 C 1.37623 * 120.24951 * 359.97438 * 26 12 11 28 28 H 0.96999 * 119.99562 * 184.18844 * 1 2 3 29 29 H 1.07996 * 120.12252 * 0.02562 * 10 9 7 30 30 H 1.08004 * 119.87699 * 180.31979 * 11 10 9 31 31 H 0.97004 * 119.99650 * 244.99986 * 16 13 12 32 32 H 1.08998 * 109.46596 * 285.00111 * 17 16 13 33 33 H 1.09004 * 109.46971 * 44.99590 * 17 16 13 34 34 H 1.08998 * 109.47249 * 185.00132 * 18 17 16 35 35 H 1.09006 * 109.47093 * 304.99824 * 18 17 16 36 36 H 1.08999 * 117.49919 * 214.98075 * 22 20 19 37 37 H 1.08994 * 117.50323 * 0.02562 * 22 20 19 38 38 H 1.08005 * 119.87815 * 180.02562 * 26 12 11 39 39 H 1.07997 * 120.12749 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.1009 1.6936 -1.2092 5 1 1.2771 2.7465 -0.0067 6 1 3.0909 1.6994 1.2157 7 6 2.0081 -1.2120 0.0057 8 1 2.9991 -1.2613 0.4322 9 6 1.4176 -2.3718 -0.5467 10 6 1.8229 -3.6481 -0.1143 11 6 1.2366 -4.7700 -0.6542 12 6 0.2595 -4.6465 -1.6299 13 16 -0.4767 -6.0919 -2.3179 14 8 -0.3117 -7.1236 -1.3548 15 8 -1.7445 -5.6952 -2.8224 16 7 0.4334 -6.5279 -3.6309 17 6 1.8210 -6.9613 -3.4491 18 6 2.3111 -7.6509 -4.7237 19 8 2.3477 -6.7043 -5.7936 20 6 2.7950 -7.2492 -7.0367 21 1 2.9810 -8.3232 -7.0395 22 6 2.2451 -6.6241 -8.3204 23 6 3.6971 -6.3732 -7.9083 24 9 4.0215 -5.1002 -7.4270 25 9 4.6982 -7.0118 -8.6480 26 6 -0.1431 -3.3943 -2.0680 27 6 0.4243 -2.2585 -1.5370 28 1 -0.4849 -0.8378 0.0614 29 1 2.5870 -3.7467 0.6425 30 1 1.5423 -5.7505 -0.3201 31 1 0.0477 -6.4965 -4.5204 32 1 2.4480 -6.0943 -3.2409 33 1 1.8772 -7.6592 -2.6137 34 1 3.3113 -8.0515 -4.5586 35 1 1.6321 -8.4639 -4.9811 36 1 2.0699 -7.2868 -9.1679 37 1 1.5427 -5.7971 -8.2168 38 1 -0.9055 -3.3098 -2.8284 39 1 0.1089 -1.2840 -1.8795 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327402256.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:59 Heat of formation + Delta-G solvation = -177.591060 kcal Electronic energy + Delta-G solvation = -27661.288986 eV Core-core repulsion = 23139.305681 eV Total energy + Delta-G solvation = -4521.983305 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.87355 -47.54971 -38.91063 -37.81183 -36.60177 -35.82666 -35.20640 -34.25598 -34.01247 -30.12922 -29.51092 -28.71706 -25.64805 -23.12735 -22.84131 -22.55768 -21.56084 -21.33882 -19.05538 -18.46763 -18.22729 -17.58880 -17.18709 -16.78482 -16.41169 -16.31967 -15.95080 -15.27361 -14.85424 -14.64788 -14.25890 -14.21325 -13.98169 -13.93850 -13.73580 -13.66010 -13.25444 -13.00926 -12.84495 -12.51201 -12.35529 -12.26049 -11.85566 -11.74456 -11.51872 -11.45121 -11.36085 -11.24684 -11.18646 -10.72896 -10.58295 -10.32518 -9.93029 -9.72696 -9.68021 -9.33254 -9.13823 -8.13633 -7.95659 -7.56552 -4.90384 1.18090 2.19727 2.50973 2.74459 2.76965 2.95854 2.98144 3.04137 3.20272 3.64289 3.76981 3.90288 4.18259 4.20666 4.32541 4.44804 4.68663 4.76717 4.84805 5.00910 5.10232 5.16726 5.19829 5.40751 5.46217 5.70459 5.93284 5.95445 6.03764 6.52065 6.61980 6.65932 6.86338 7.08360 7.20859 7.28685 7.42511 7.45401 7.49588 7.84004 8.02554 8.40624 8.52160 9.64859 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.009698 B = 0.003087 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2886.444849 B = 9067.190291 C =11093.004085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.034 3.966 3 Si 1.069 2.931 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.484 4.484 8 H 0.086 0.914 9 C 0.118 3.882 10 C -0.238 4.238 11 C 0.006 3.994 12 C -0.800 4.800 13 S 2.697 3.303 14 O -0.986 6.986 15 O -0.983 6.983 16 N -1.124 6.124 17 C 0.124 3.876 18 C 0.053 3.947 19 O -0.333 6.333 20 C 0.027 3.973 21 H 0.136 0.864 22 C -0.177 4.177 23 C 0.184 3.816 24 F -0.151 7.151 25 F -0.163 7.163 26 C 0.009 3.991 27 C -0.236 4.236 28 H 0.306 0.694 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.413 0.587 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.105 0.895 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.749 -11.833 -12.755 18.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.192 4.192 3 Si 0.891 3.109 4 H -0.195 1.195 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.510 4.510 8 H 0.104 0.896 9 C 0.114 3.886 10 C -0.259 4.259 11 C -0.014 4.014 12 C -0.896 4.896 13 S 2.795 3.205 14 O -0.976 6.976 15 O -0.974 6.974 16 N -0.881 5.881 17 C -0.003 4.003 18 C -0.025 4.025 19 O -0.251 6.251 20 C -0.033 4.033 21 H 0.153 0.847 22 C -0.215 4.215 23 C 0.147 3.853 24 F -0.131 7.131 25 F -0.144 7.144 26 C -0.011 4.011 27 C -0.257 4.257 28 H 0.120 0.880 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.246 0.754 32 H 0.097 0.903 33 H 0.114 0.886 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.123 0.877 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.785 -10.490 -12.286 16.849 hybrid contribution 0.873 -1.176 -0.411 1.521 sum 5.658 -11.665 -12.697 18.147 Atomic orbital electron populations 1.70472 1.08343 1.35035 1.24557 1.27347 0.95622 1.04990 0.91274 0.83570 0.75749 0.73180 0.78432 1.19518 1.19405 1.19693 1.20986 1.03916 0.94136 1.31937 0.89557 1.17868 0.89462 0.92681 0.88624 1.20956 1.06726 0.92502 1.05670 1.20169 0.91840 0.97474 0.91961 1.29094 1.24046 1.14514 1.21940 1.01107 0.72820 0.74256 0.72297 1.93476 1.86740 1.57171 1.60251 1.93499 1.39364 1.84235 1.80314 1.55677 1.23318 1.84415 1.24678 1.21240 0.82749 1.00325 0.95990 1.22993 1.01143 0.91682 0.86649 1.88021 1.85083 1.35716 1.16276 1.24050 0.97515 0.96924 0.84848 0.84704 1.24861 0.93364 1.04902 0.98374 1.20841 0.84472 0.81025 0.99006 1.93074 1.93694 1.38476 1.87867 1.93027 1.63472 1.80713 1.77176 1.20185 0.94347 0.91499 0.95114 1.21166 1.04820 0.97159 1.02533 0.88009 0.88156 0.87719 0.75357 0.90301 0.88633 0.91117 0.91537 0.85208 0.85053 0.87676 0.87296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.04 12.38 55.55 0.69 -18.35 16 2 C 0.03 0.79 4.90 -17.34 -0.08 0.71 16 3 Si 1.07 19.77 30.01 -169.99 -5.10 14.67 16 4 H -0.27 -4.85 7.11 56.52 0.40 -4.44 16 5 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 6 H -0.27 -4.74 7.11 56.52 0.40 -4.33 16 7 C -0.48 -11.91 8.98 -37.74 -0.34 -12.25 16 8 H 0.09 2.02 7.97 -52.49 -0.42 1.61 16 9 C 0.12 2.96 5.30 -106.82 -0.57 2.39 16 10 C -0.24 -5.56 9.80 -38.87 -0.38 -5.94 16 11 C 0.01 0.12 9.49 -39.66 -0.38 -0.25 16 12 C -0.80 -17.19 5.97 -39.29 -0.23 -17.42 16 13 S 2.70 49.80 5.73 -107.50 -0.62 49.19 16 14 O -0.99 -19.83 16.73 -57.17 -0.96 -20.79 16 15 O -0.98 -20.59 17.26 -57.17 -0.99 -21.57 16 16 N -1.12 -15.68 5.96 -10.62 -0.06 -15.74 16 17 C 0.12 1.47 6.61 -4.05 -0.03 1.44 16 18 C 0.05 0.46 6.00 37.15 0.22 0.69 16 19 O -0.33 -3.57 10.28 -35.23 -0.36 -3.93 16 20 C 0.03 0.22 6.43 -26.73 -0.17 0.05 16 21 H 0.14 0.66 7.93 -51.93 -0.41 0.25 16 22 C -0.18 -1.22 10.45 -26.73 -0.28 -1.50 16 23 C 0.18 1.82 5.26 -26.73 -0.14 1.68 16 24 F -0.15 -2.00 17.47 2.25 0.04 -1.96 16 25 F -0.16 -1.66 17.60 2.25 0.04 -1.62 16 26 C 0.01 0.20 9.49 -39.66 -0.38 -0.17 16 27 C -0.24 -5.85 7.97 -38.87 -0.31 -6.16 16 28 H 0.31 7.89 6.72 -40.82 -0.27 7.61 16 29 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 30 H 0.10 2.00 7.60 -52.48 -0.40 1.60 16 31 H 0.41 5.04 8.51 -34.47 -0.29 4.75 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.10 1.04 7.75 -51.93 -0.40 0.64 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.13 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.11 2.24 7.60 -52.48 -0.40 1.84 16 39 H 0.11 2.73 6.53 -52.49 -0.34 2.39 16 LS Contribution 360.75 15.07 5.44 5.44 Total: -1.00 -31.81 360.75 -9.22 -41.02 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -4.27 Total: 10.40 kcal Atomic # 6 Polarization: -33.70 SS G_CDS: -3.06 Total: -36.76 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 0.62 Total: -34.09 kcal Atomic # 8 Polarization: -43.99 SS G_CDS: -2.31 Total: -46.29 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.08 Total: -3.57 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.10 Total: 14.67 kcal Atomic # 16 Polarization: 49.80 SS G_CDS: -0.62 Total: 49.19 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.81 -9.22 -41.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327402256.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.568 kcal (2) G-P(sol) polarization free energy of solvation -31.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds