Wall clock time and date at job start Wed Apr 1 2020 04:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99957 * 2 1 4 4 H 1.48490 * 109.47473 * 269.99996 * 3 2 1 5 5 H 1.48496 * 109.47152 * 30.00634 * 3 2 1 6 6 H 1.48503 * 109.46697 * 150.00349 * 3 2 1 7 7 C 1.37875 * 119.99570 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99795 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00524 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47213 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47092 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47398 * 54.99747 * 11 10 9 13 13 N 1.46901 * 109.46949 * 295.00125 * 11 10 9 14 14 C 1.50700 * 109.47196 * 175.00154 * 11 10 9 15 15 O 1.21282 * 119.99797 * 100.00243 * 14 11 10 16 16 N 1.34770 * 119.99998 * 279.99916 * 14 11 10 17 17 C 1.46504 * 120.00277 * 180.02562 * 16 14 11 18 18 C 1.50699 * 109.47421 * 179.97438 * 17 16 14 19 19 C 1.33388 * 125.20336 * 89.99701 * 18 17 16 20 20 C 1.38416 * 114.91944 * 179.79354 * 19 18 17 21 21 C 1.33384 * 114.92458 * 0.43062 * 20 19 18 22 22 S 1.76204 * 125.20844 * 179.86115 * 21 20 19 23 23 N 1.65595 * 107.21987 * 89.71629 * 22 21 20 24 24 O 1.42105 * 106.39972 * 336.17745 * 22 21 20 25 25 O 1.42098 * 106.40426 * 203.25917 * 22 21 20 26 26 S 1.75884 * 125.20239 * 270.02319 * 18 17 16 27 27 H 0.96998 * 119.99472 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.46483 * 60.00385 * 9 7 2 29 29 H 1.08998 * 109.47363 * 300.00695 * 9 7 2 30 30 H 1.08999 * 109.47071 * 60.00155 * 10 9 7 31 31 H 1.08998 * 109.47090 * 300.00128 * 10 9 7 32 32 H 1.00895 * 111.00125 * 299.99870 * 13 11 10 33 33 H 1.00898 * 111.00203 * 63.95709 * 13 11 10 34 34 H 0.96999 * 120.00013 * 359.97438 * 16 14 11 35 35 H 1.09000 * 109.46878 * 59.99332 * 17 16 14 36 36 H 1.08996 * 109.46814 * 299.99934 * 17 16 14 37 37 H 1.07997 * 122.53896 * 0.02562 * 19 18 17 38 38 H 1.07999 * 122.54090 * 180.27434 * 20 19 18 39 39 H 0.96995 * 120.00626 * 239.99979 * 23 22 21 40 40 H 0.97002 * 119.99639 * 60.00285 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.3999 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 1 0.7883 -5.0068 -0.8432 13 7 0.7280 -5.1188 1.2538 14 6 2.4548 -6.1298 -0.1250 15 8 2.7862 -6.7536 0.8609 16 7 2.9581 -6.4585 -1.3312 17 6 3.9052 -7.5698 -1.4517 18 6 4.3118 -7.7292 -2.8940 19 6 5.3485 -7.1209 -3.4724 20 6 5.5306 -7.4248 -4.8105 21 6 4.6367 -8.2728 -5.3210 22 16 4.6111 -8.8392 -6.9894 23 7 5.5375 -10.2102 -7.0559 24 8 5.2927 -7.8567 -7.7571 25 8 3.2753 -9.2443 -7.2552 26 16 3.4917 -8.7453 -4.0723 27 1 -0.4849 0.8401 0.0004 28 1 0.6241 -2.5567 -0.8904 29 1 0.6246 -2.5571 0.8896 30 1 2.8718 -3.6043 0.8895 31 1 2.8719 -3.6043 -0.8905 32 1 1.3475 -5.1033 2.0500 33 1 0.0232 -4.4008 1.3300 34 1 2.6927 -5.9599 -2.1197 35 1 3.4332 -8.4887 -1.1039 36 1 4.7873 -7.3626 -0.8459 37 1 5.9987 -6.4455 -2.9363 38 1 6.3342 -7.0050 -5.3973 39 1 6.3168 -10.2415 -7.6326 40 1 5.3008 -10.9820 -6.5182 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327857165.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:47 Heat of formation + Delta-G solvation = -92.661192 kcal Electronic energy + Delta-G solvation = -24777.444326 eV Core-core repulsion = 20845.276994 eV Total energy + Delta-G solvation = -3932.167332 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.081 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.84438 -38.52512 -37.58355 -36.31708 -35.69551 -34.92567 -33.75246 -32.88632 -31.11159 -29.93171 -27.57294 -26.03117 -24.15265 -23.16073 -20.98408 -20.83174 -20.02303 -19.67114 -18.57626 -17.91601 -17.57696 -17.31563 -16.54690 -16.32780 -16.17294 -15.34658 -15.12291 -14.95439 -14.49853 -14.46329 -14.14837 -13.68973 -13.56815 -13.12848 -13.00869 -12.87967 -12.71190 -12.58097 -12.50496 -12.47076 -12.19489 -11.88199 -11.71985 -11.33797 -11.12983 -11.05076 -10.96776 -10.72225 -10.11422 -10.03799 -9.75123 -9.33010 -9.25072 -9.22591 -9.02663 -8.46878 -8.25322 -6.11252 -4.14599 -0.22173 0.02635 0.90299 1.25928 1.90722 2.73749 2.78884 3.20810 3.24633 3.25306 3.32254 3.35090 4.03861 4.10836 4.37007 4.65052 4.85185 4.93627 5.02493 5.12451 5.24989 5.29144 5.35683 5.41719 5.51427 5.54149 5.69158 5.79491 6.21690 6.25098 6.45565 6.50722 6.82094 7.31481 7.47271 7.53630 7.60003 7.84428 7.85965 8.26808 8.30031 8.91212 9.50518 10.99647 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.012806 B = 0.002216 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.875857 B =12634.449833 C =13989.560674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.024 3.976 10 C -0.137 4.137 11 C 0.076 3.924 12 H 0.098 0.902 13 N -0.831 5.831 14 C 0.529 3.471 15 O -0.535 6.535 16 N -0.734 5.734 17 C 0.186 3.814 18 C -0.157 4.157 19 C -0.144 4.144 20 C 0.014 3.986 21 C -0.802 4.802 22 S 2.729 3.271 23 N -1.242 6.242 24 O -0.952 6.952 25 O -0.951 6.951 26 S 0.234 5.766 27 H 0.262 0.738 28 H 0.019 0.981 29 H 0.018 0.982 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.346 0.654 33 H 0.356 0.644 34 H 0.405 0.595 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.155 0.845 38 H 0.158 0.842 39 H 0.423 0.577 40 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.327 -22.672 -12.187 28.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.177 4.177 11 C -0.040 4.040 12 H 0.116 0.884 13 N -0.363 5.363 14 C 0.316 3.684 15 O -0.410 6.410 16 N -0.389 5.389 17 C 0.061 3.939 18 C -0.277 4.277 19 C -0.176 4.176 20 C -0.021 4.021 21 C -1.003 5.003 22 S 2.811 3.189 23 N -0.915 5.915 24 O -0.942 6.942 25 O -0.940 6.940 26 S 0.502 5.498 27 H 0.072 0.928 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.159 0.841 33 H 0.171 0.829 34 H 0.240 0.760 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.173 0.827 38 H 0.175 0.825 39 H 0.253 0.747 40 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 10.313 -24.155 -12.347 29.022 hybrid contribution 2.473 2.828 0.483 3.787 sum 12.786 -21.327 -11.863 27.551 Atomic orbital electron populations 1.69948 1.06023 1.26835 1.50322 1.25017 0.94882 0.99340 0.95095 0.86575 0.79827 0.83331 0.78169 1.20586 1.21127 1.19911 1.21160 0.92987 0.90870 1.51255 0.92744 1.19104 0.93706 0.91085 0.97407 1.22388 0.99911 0.93897 1.01508 1.21477 0.94619 0.92066 0.95797 0.88414 1.58739 1.18444 1.55988 1.03118 1.20975 0.80935 0.84444 0.82039 1.90647 1.60101 1.53311 1.36966 1.46075 1.47076 1.34945 1.10785 1.19713 0.94487 0.91594 0.88117 1.25227 0.99792 1.02459 1.00237 1.20477 0.99514 1.02833 0.94810 1.20004 0.96131 0.91465 0.94547 1.35922 1.12670 1.22093 1.29635 1.00933 0.73415 0.72556 0.71955 1.53278 1.46674 1.31935 1.59651 1.93621 1.74863 1.58733 1.66971 1.93648 1.35479 1.82187 1.82717 1.84361 1.26741 1.42520 0.96180 0.92840 0.96296 0.96361 0.92611 0.92532 0.84109 0.82883 0.75995 0.89973 0.89020 0.82744 0.82479 0.74731 0.75310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.87 13.29 55.43 0.74 -25.14 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.14 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.23 9.11 -34.44 -0.31 -14.54 16 8 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 9 C 0.02 0.57 4.74 -27.89 -0.13 0.44 16 10 C -0.14 -2.60 4.78 -26.73 -0.13 -2.73 16 11 C 0.08 1.24 3.21 -68.86 -0.22 1.01 16 12 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 13 N -0.83 -13.88 8.94 -5.65 -0.05 -13.93 16 14 C 0.53 8.19 7.08 -10.99 -0.08 8.11 16 15 O -0.54 -9.79 16.25 5.56 0.09 -9.70 16 16 N -0.73 -8.72 5.55 -61.47 -0.34 -9.06 16 17 C 0.19 1.83 6.16 -5.19 -0.03 1.80 16 18 C -0.16 -1.33 5.88 -36.00 -0.21 -1.54 16 19 C -0.14 -1.12 10.05 -41.21 -0.41 -1.53 16 20 C 0.01 0.11 9.84 -41.21 -0.41 -0.30 16 21 C -0.80 -6.30 6.57 29.04 0.19 -6.11 16 22 S 2.73 20.63 6.43 -107.50 -0.69 19.94 16 23 N -1.24 -3.96 9.52 60.35 0.57 -3.39 16 24 O -0.95 -9.92 17.80 -57.17 -1.02 -10.94 16 25 O -0.95 -10.41 17.91 -57.17 -1.02 -11.43 16 26 S 0.23 1.94 23.20 -107.50 -2.49 -0.56 16 27 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.35 5.83 8.58 -39.29 -0.34 5.49 16 33 H 0.36 5.99 7.55 -39.29 -0.30 5.69 16 34 H 0.41 4.29 8.46 -40.82 -0.35 3.94 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.16 0.88 8.06 -52.49 -0.42 0.45 16 39 H 0.42 0.60 8.96 -34.47 -0.31 0.30 16 40 H 0.42 0.53 8.96 -34.46 -0.31 0.22 16 LS Contribution 373.03 15.07 5.62 5.62 Total: -1.00 -36.46 373.03 -10.34 -46.80 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -4.88 Total: 9.49 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -1.84 Total: -13.86 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: 0.92 Total: -51.51 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -1.95 Total: -32.07 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 22.57 SS G_CDS: -3.19 Total: 19.38 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.46 -10.34 -46.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327857165.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.862 kcal (2) G-P(sol) polarization free energy of solvation -36.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds