Wall clock time and date at job start Wed Apr 1 2020 04:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99957 * 2 1 4 4 H 1.48490 * 109.47473 * 269.99996 * 3 2 1 5 5 H 1.48496 * 109.47152 * 30.00634 * 3 2 1 6 6 H 1.48503 * 109.46697 * 150.00349 * 3 2 1 7 7 C 1.37875 * 119.99570 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99795 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00524 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47213 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47092 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47398 * 54.99747 * 11 10 9 13 13 N 1.46901 * 109.46949 * 295.00125 * 11 10 9 14 14 C 1.50700 * 109.47196 * 175.00154 * 11 10 9 15 15 O 1.21282 * 119.99797 * 100.00243 * 14 11 10 16 16 N 1.34770 * 119.99998 * 279.99916 * 14 11 10 17 17 C 1.46504 * 120.00277 * 180.02562 * 16 14 11 18 18 C 1.50699 * 109.47421 * 179.97438 * 17 16 14 19 19 C 1.33388 * 125.20336 * 89.99701 * 18 17 16 20 20 C 1.38416 * 114.91944 * 179.79354 * 19 18 17 21 21 C 1.33384 * 114.92458 * 0.43062 * 20 19 18 22 22 S 1.76204 * 125.20844 * 179.86115 * 21 20 19 23 23 N 1.65595 * 107.21987 * 89.71629 * 22 21 20 24 24 O 1.42105 * 106.39972 * 336.17745 * 22 21 20 25 25 O 1.42098 * 106.40426 * 203.25917 * 22 21 20 26 26 S 1.75884 * 125.20239 * 270.02319 * 18 17 16 27 27 H 0.96998 * 119.99472 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.46483 * 60.00385 * 9 7 2 29 29 H 1.08998 * 109.47363 * 300.00695 * 9 7 2 30 30 H 1.08999 * 109.47071 * 60.00155 * 10 9 7 31 31 H 1.08998 * 109.47090 * 300.00128 * 10 9 7 32 32 H 1.00895 * 111.00125 * 299.99870 * 13 11 10 33 33 H 1.00898 * 111.00203 * 63.95709 * 13 11 10 34 34 H 0.96999 * 120.00013 * 359.97438 * 16 14 11 35 35 H 1.09000 * 109.46878 * 59.99332 * 17 16 14 36 36 H 1.08996 * 109.46814 * 299.99934 * 17 16 14 37 37 H 1.07997 * 122.53896 * 0.02562 * 19 18 17 38 38 H 1.07999 * 122.54090 * 180.27434 * 20 19 18 39 39 H 0.96995 * 120.00626 * 239.99979 * 23 22 21 40 40 H 0.97002 * 119.99639 * 60.00285 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.3999 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 1 0.7883 -5.0068 -0.8432 13 7 0.7280 -5.1188 1.2538 14 6 2.4548 -6.1298 -0.1250 15 8 2.7862 -6.7536 0.8609 16 7 2.9581 -6.4585 -1.3312 17 6 3.9052 -7.5698 -1.4517 18 6 4.3118 -7.7292 -2.8940 19 6 5.3485 -7.1209 -3.4724 20 6 5.5306 -7.4248 -4.8105 21 6 4.6367 -8.2728 -5.3210 22 16 4.6111 -8.8392 -6.9894 23 7 5.5375 -10.2102 -7.0559 24 8 5.2927 -7.8567 -7.7571 25 8 3.2753 -9.2443 -7.2552 26 16 3.4917 -8.7453 -4.0723 27 1 -0.4849 0.8401 0.0004 28 1 0.6241 -2.5567 -0.8904 29 1 0.6246 -2.5571 0.8896 30 1 2.8718 -3.6043 0.8895 31 1 2.8719 -3.6043 -0.8905 32 1 1.3475 -5.1033 2.0500 33 1 0.0232 -4.4008 1.3300 34 1 2.6927 -5.9599 -2.1197 35 1 3.4332 -8.4887 -1.1039 36 1 4.7873 -7.3626 -0.8459 37 1 5.9987 -6.4455 -2.9363 38 1 6.3342 -7.0050 -5.3973 39 1 6.3168 -10.2415 -7.6326 40 1 5.3008 -10.9820 -6.5182 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327857165.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:46 Heat of formation + Delta-G solvation = -124.710749 kcal Electronic energy + Delta-G solvation = -24778.834099 eV Core-core repulsion = 20845.276994 eV Total energy + Delta-G solvation = -3933.557105 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.081 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.02996 -39.21969 -38.31176 -37.15806 -37.04818 -35.99315 -34.84306 -34.13223 -31.92528 -31.68793 -28.68328 -27.36579 -25.54459 -24.13255 -22.41434 -21.60021 -21.26602 -20.28096 -19.40698 -18.72059 -18.37533 -18.14362 -18.07593 -17.25299 -17.16783 -16.55601 -16.16690 -16.13130 -15.86904 -15.57079 -15.29386 -14.88887 -14.68022 -14.29436 -14.21080 -13.91240 -13.62781 -13.48719 -13.35952 -13.30771 -13.24372 -13.21359 -12.93969 -12.70129 -12.56633 -12.52365 -11.95624 -11.81061 -11.75007 -11.43335 -11.30933 -10.93083 -10.56649 -10.33111 -10.26076 -9.66303 -9.65132 -8.22045 -6.32294 -0.82386 -0.60794 0.26995 0.63487 1.28630 1.39356 1.39911 1.50188 1.54741 2.17966 2.21984 2.39524 2.66175 3.11868 3.32268 3.49419 3.73914 3.75834 4.01758 4.12310 4.23488 4.26752 4.40862 4.51317 4.65768 4.71198 4.83181 4.92627 5.08377 5.19620 5.21053 5.24690 5.46341 5.65168 5.80335 6.04866 6.20481 6.32753 6.40227 6.47074 6.83544 7.12179 7.36937 8.88723 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.012806 B = 0.002216 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.875857 B =12634.449833 C =13989.560674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.004 3.996 3 Si 0.959 3.041 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.543 4.543 8 H 0.056 0.944 9 C 0.029 3.971 10 C -0.120 4.120 11 C 0.080 3.920 12 H 0.108 0.892 13 N -0.830 5.830 14 C 0.533 3.467 15 O -0.565 6.565 16 N -0.720 5.720 17 C 0.188 3.812 18 C -0.164 4.164 19 C -0.140 4.140 20 C 0.013 3.987 21 C -0.803 4.803 22 S 2.751 3.249 23 N -1.223 6.223 24 O -0.981 6.981 25 O -0.987 6.987 26 S 0.223 5.777 27 H 0.264 0.736 28 H 0.000 1.000 29 H 0.003 0.997 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.345 0.655 33 H 0.353 0.647 34 H 0.413 0.587 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.170 0.830 38 H 0.177 0.823 39 H 0.434 0.566 40 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.154 -23.045 -12.915 29.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.194 4.194 3 Si 0.784 3.216 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.581 4.581 8 H 0.074 0.926 9 C -0.008 4.008 10 C -0.160 4.160 11 C -0.035 4.035 12 H 0.126 0.874 13 N -0.362 5.362 14 C 0.320 3.680 15 O -0.443 6.443 16 N -0.374 5.374 17 C 0.063 3.937 18 C -0.284 4.284 19 C -0.172 4.172 20 C -0.023 4.023 21 C -1.005 5.005 22 S 2.833 3.167 23 N -0.902 5.902 24 O -0.971 6.971 25 O -0.976 6.976 26 S 0.491 5.509 27 H 0.072 0.928 28 H 0.019 0.981 29 H 0.021 0.979 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.158 0.842 33 H 0.168 0.832 34 H 0.249 0.751 35 H 0.101 0.899 36 H 0.115 0.885 37 H 0.187 0.813 38 H 0.194 0.806 39 H 0.267 0.733 40 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 12.161 -24.557 -13.115 30.380 hybrid contribution 1.939 2.883 0.671 3.538 sum 14.099 -21.674 -12.445 28.696 Atomic orbital electron populations 1.70064 1.07508 1.27745 1.51392 1.25876 0.95732 1.03021 0.94815 0.85540 0.78660 0.78968 0.78449 1.19801 1.20893 1.19110 1.21618 0.93371 0.92408 1.50745 0.92606 1.18976 0.94084 0.92086 0.95697 1.22128 0.98763 0.93553 1.01568 1.21417 0.94782 0.91315 0.96025 0.87411 1.58757 1.18391 1.55701 1.03328 1.20653 0.80706 0.84031 0.82654 1.90639 1.61127 1.54337 1.38154 1.45965 1.46482 1.35066 1.09870 1.19768 0.94054 0.90689 0.89214 1.25061 1.00434 1.03339 0.99530 1.20705 0.99138 1.02368 0.94956 1.20275 0.96401 0.90982 0.94610 1.35943 1.12707 1.22430 1.29377 1.00008 0.72652 0.72591 0.71419 1.52844 1.46578 1.30856 1.59882 1.93579 1.75211 1.60315 1.67970 1.93609 1.37871 1.82789 1.83373 1.84432 1.27138 1.42845 0.96493 0.92763 0.98117 0.97898 0.93427 0.91467 0.84211 0.83202 0.75082 0.89877 0.88539 0.81252 0.80579 0.73313 0.73851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.19 13.29 21.45 0.28 -53.91 16 2 C 0.00 0.22 5.46 84.65 0.46 0.68 16 3 Si 0.96 43.09 29.54 68.60 2.03 45.12 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.54 -29.43 9.11 25.60 0.23 -29.19 16 8 H 0.06 2.94 7.74 -2.91 -0.02 2.91 16 9 C 0.03 1.38 4.74 29.85 0.14 1.53 16 10 C -0.12 -4.49 4.78 30.59 0.15 -4.35 16 11 C 0.08 2.56 3.21 44.17 0.14 2.70 16 12 H 0.11 3.23 8.14 -2.39 -0.02 3.22 16 13 N -0.83 -27.64 8.94 -171.80 -1.54 -29.17 16 14 C 0.53 15.90 7.08 87.66 0.62 16.53 16 15 O -0.56 -20.17 16.25 -3.04 -0.05 -20.22 16 16 N -0.72 -15.97 5.55 -466.79 -2.59 -18.56 16 17 C 0.19 3.38 6.16 85.63 0.53 3.91 16 18 C -0.16 -2.48 5.88 24.59 0.14 -2.33 16 19 C -0.14 -1.83 10.05 21.21 0.21 -1.61 16 20 C 0.01 0.16 9.84 21.21 0.21 0.37 16 21 C -0.80 -11.37 6.57 66.72 0.44 -10.93 16 22 S 2.75 38.54 6.43 -56.49 -0.36 38.18 16 23 N -1.22 -5.59 9.52 37.02 0.35 -5.24 16 24 O -0.98 -19.38 17.80 -128.00 -2.28 -21.66 16 25 O -0.99 -21.11 17.91 -128.00 -2.29 -23.41 16 26 S 0.22 3.42 23.20 -56.49 -1.31 2.11 16 27 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 28 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 29 H 0.00 0.14 6.87 -2.39 -0.02 0.12 16 30 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.34 11.62 8.58 -89.70 -0.77 10.85 16 33 H 0.35 12.02 7.55 -89.70 -0.68 11.34 16 34 H 0.41 7.99 8.46 -92.71 -0.78 7.21 16 35 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 38 H 0.18 1.50 8.06 -2.91 -0.02 1.48 16 39 H 0.43 0.34 8.96 -96.75 -0.87 -0.52 16 40 H 0.43 0.23 8.96 -96.75 -0.87 -0.63 16 Total: -1.00 -77.21 373.03 -7.30 -84.51 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: -2.82 Total: 24.97 kcal Atomic # 6 Polarization: -25.99 SS G_CDS: 3.28 Total: -22.71 kcal Atomic # 7 Polarization: -103.40 SS G_CDS: -3.49 Total: -106.89 kcal Atomic # 8 Polarization: -60.66 SS G_CDS: -4.62 Total: -65.28 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 41.96 SS G_CDS: -1.67 Total: 40.29 kcal Total: -77.21 -7.30 -84.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327857165.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.205 kcal (2) G-P(sol) polarization free energy of solvation -77.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds