Wall clock time and date at job start Wed Apr 1 2020 04:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99836 * 0.28505 * 7 2 1 10 10 O 1.42103 * 106.40082 * 293.25616 * 9 7 2 11 11 O 1.42095 * 106.40428 * 66.17927 * 9 7 2 12 12 C 1.76196 * 107.21610 * 179.72181 * 9 7 2 13 13 C 1.38466 * 119.88864 * 269.72154 * 12 9 7 14 14 C 1.38206 * 120.33825 * 179.76605 * 13 12 9 15 15 C 1.38326 * 120.11617 * 0.51074 * 14 13 12 16 16 F 1.35100 * 120.10815 * 179.72774 * 15 14 13 17 17 C 1.39826 * 119.77994 * 359.74623 * 15 14 13 18 18 C 1.47684 * 120.16662 * 180.02562 * 17 15 14 19 19 O 1.21578 * 120.00337 * 359.97438 * 18 17 15 20 20 N 1.34775 * 120.00351 * 179.97438 * 18 17 15 21 21 C 1.46500 * 120.00602 * 179.97438 * 20 18 17 22 22 C 1.53004 * 109.47263 * 180.02562 * 21 20 18 23 23 C 1.52999 * 109.46727 * 179.97438 * 22 21 20 24 24 C 1.53004 * 109.46727 * 180.02562 * 23 22 21 25 25 F 1.39900 * 109.46792 * 180.02562 * 24 23 22 26 26 C 1.37853 * 119.89327 * 89.99910 * 12 9 7 27 27 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 28 28 H 1.07998 * 119.82911 * 359.97438 * 13 12 9 29 29 H 1.08003 * 119.94364 * 180.25973 * 14 13 12 30 30 H 0.97005 * 119.99483 * 359.97438 * 20 18 17 31 31 H 1.09004 * 109.46884 * 300.00092 * 21 20 18 32 32 H 1.09005 * 109.46640 * 59.99926 * 21 20 18 33 33 H 1.08994 * 109.47144 * 299.99785 * 22 21 20 34 34 H 1.08996 * 109.46877 * 60.00089 * 22 21 20 35 35 H 1.08994 * 109.47215 * 299.99841 * 23 22 21 36 36 H 1.09006 * 109.47300 * 60.00357 * 23 22 21 37 37 H 1.08994 * 109.47144 * 299.99885 * 24 23 22 38 38 H 1.08996 * 109.46877 * 60.00190 * 24 23 22 39 39 H 1.07998 * 120.06256 * 359.95159 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 16 1.1234 -2.7200 -0.0064 10 8 0.4512 -2.8009 1.2430 11 8 0.4514 -2.7897 -1.2564 12 6 2.3201 -4.0132 -0.0120 13 6 2.7846 -4.5182 -1.2147 14 6 3.7267 -5.5293 -1.2300 15 6 4.2044 -6.0509 -0.0413 16 9 5.1213 -7.0429 -0.0564 17 6 3.7348 -5.5482 1.1761 18 6 4.2394 -6.0984 2.4503 19 8 5.0648 -6.9910 2.4427 20 7 3.7849 -5.6111 3.6218 21 6 4.2850 -6.1572 4.8859 22 6 3.6125 -5.4350 6.0551 23 6 4.1344 -6.0059 7.3752 24 6 3.4614 -5.2840 8.5444 25 9 3.9390 -5.8056 9.7515 26 6 2.7866 -4.5228 1.1809 27 1 -0.4850 0.8401 -0.0004 28 1 2.4112 -4.1177 -2.1456 29 1 4.0877 -5.9156 -2.1718 30 1 3.1266 -4.8987 3.6280 31 1 4.0567 -7.2219 4.9373 32 1 5.3641 -6.0138 4.9420 33 1 3.8403 -4.3703 6.0040 34 1 2.5335 -5.5788 5.9988 35 1 3.9061 -7.0704 7.4261 36 1 5.2135 -5.8624 7.4318 37 1 3.6892 -4.2194 8.4937 38 1 2.3825 -5.4279 8.4876 39 1 2.4199 -4.1296 2.1175 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352218965.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:46 Heat of formation + Delta-G solvation = -210.317866 kcal Electronic energy + Delta-G solvation = -27463.549120 eV Core-core repulsion = 22940.146674 eV Total energy + Delta-G solvation = -4523.402446 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.92915 -47.89479 -40.09659 -38.30079 -36.30870 -35.47617 -34.18565 -33.77957 -33.26002 -31.53489 -30.64629 -28.56226 -26.31213 -24.62261 -23.41190 -22.72891 -21.85586 -20.76148 -19.04074 -18.36297 -17.39513 -16.87385 -16.85482 -16.64278 -16.15850 -15.90737 -15.88931 -15.79370 -15.44708 -15.07671 -14.93561 -14.53381 -14.36278 -14.11086 -13.95282 -13.46863 -13.11943 -12.93719 -12.90978 -12.54746 -12.39341 -12.09567 -12.08046 -11.57502 -11.50425 -11.36026 -11.34427 -11.23142 -10.97566 -10.68983 -10.49933 -10.40630 -10.20569 -9.81690 -9.40841 -9.35741 -9.15632 -9.07875 -8.84480 -6.87787 -5.52071 0.60302 0.95210 1.87569 2.68723 2.92133 2.96205 3.05659 3.12340 3.54587 3.94374 4.06860 4.12590 4.36219 4.40176 4.47958 4.55929 4.62186 4.75222 4.78634 4.92712 5.01383 5.14324 5.22956 5.25914 5.31313 5.33649 5.45649 5.59358 5.63207 5.68413 5.75112 5.82662 5.86993 6.02845 6.07672 6.23183 6.67982 6.69774 7.14724 7.30212 7.77589 8.06229 8.70651 10.06953 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.008345 B = 0.003317 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3354.364722 B = 8440.454708 C =10850.926596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.133 3.867 3 Si 0.924 3.076 4 H -0.261 1.261 5 H -0.269 1.269 6 H -0.270 1.270 7 C -1.001 5.001 8 H 0.107 0.893 9 S 2.604 3.396 10 O -0.980 6.980 11 O -0.978 6.978 12 C -0.663 4.663 13 C 0.030 3.970 14 C -0.188 4.188 15 C 0.192 3.808 16 F -0.114 7.114 17 C -0.205 4.205 18 C 0.566 3.434 19 O -0.530 6.530 20 N -0.729 5.729 21 C 0.122 3.878 22 C -0.135 4.135 23 C -0.149 4.149 24 C 0.060 3.940 25 F -0.221 7.221 26 C 0.035 3.965 27 H 0.293 0.707 28 H 0.158 0.842 29 H 0.148 0.852 30 H 0.406 0.594 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.671 -7.417 7.987 12.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.086 4.086 3 Si 0.747 3.253 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.194 1.194 7 C -1.135 5.135 8 H 0.125 0.875 9 S 2.783 3.217 10 O -0.977 6.977 11 O -0.975 6.975 12 C -0.743 4.743 13 C 0.011 3.989 14 C -0.207 4.207 15 C 0.171 3.829 16 F -0.092 7.092 17 C -0.210 4.210 18 C 0.353 3.647 19 O -0.408 6.408 20 N -0.382 5.382 21 C -0.001 4.001 22 C -0.173 4.173 23 C -0.187 4.187 24 C 0.005 3.995 25 F -0.202 7.202 26 C 0.016 3.984 27 H 0.104 0.896 28 H 0.175 0.825 29 H 0.166 0.834 30 H 0.242 0.758 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 6.296 -8.268 8.041 13.140 hybrid contribution 1.135 0.963 -0.015 1.488 sum 7.431 -7.306 8.026 13.153 Atomic orbital electron populations 1.69895 1.06740 1.30980 1.39254 1.24767 0.94562 1.00812 0.88425 0.86071 0.80463 0.79987 0.78787 1.18450 1.19416 1.19448 1.30101 1.06001 1.09704 1.67676 0.87505 1.01252 0.72969 0.73863 0.73598 1.93345 1.71951 1.87605 1.44817 1.93356 1.71916 1.87539 1.44701 1.31819 1.22519 1.22307 0.97669 1.21130 0.89407 0.90238 0.98128 1.21275 1.01549 1.00786 0.97106 1.17836 0.86519 0.85168 0.93336 1.91586 1.62746 1.57638 1.97255 1.20020 1.04827 1.03446 0.92658 1.17929 0.81260 0.82107 0.83360 1.90817 1.32635 1.29814 1.87528 1.45898 1.46012 1.40882 1.05419 1.21324 0.98977 0.98263 0.81560 1.21735 1.01467 1.01064 0.93021 1.22055 1.01823 1.01391 0.93448 1.22018 0.99302 0.98478 0.79683 1.92767 1.90462 1.88977 1.48004 1.20998 0.89222 0.89839 0.98366 0.89646 0.82487 0.83399 0.75782 0.91146 0.91121 0.90316 0.90337 0.90361 0.90345 0.90519 0.90515 0.83193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.56 13.19 55.43 0.73 -21.83 16 2 C 0.13 3.37 5.46 -17.82 -0.10 3.28 16 3 Si 0.92 18.84 29.54 -169.99 -5.02 13.81 16 4 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 5 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 6 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 7 C -1.00 -24.70 9.58 30.60 0.29 -24.41 16 8 H 0.11 2.40 7.81 -52.49 -0.41 1.99 16 9 S 2.60 61.35 4.65 -107.50 -0.50 60.85 16 10 O -0.98 -24.90 17.15 -57.17 -0.98 -25.88 16 11 O -0.98 -25.43 17.14 -57.17 -0.98 -26.41 16 12 C -0.66 -12.25 5.81 -39.64 -0.23 -12.48 16 13 C 0.03 0.48 9.51 -39.51 -0.38 0.10 16 14 C -0.19 -2.67 10.01 -39.56 -0.40 -3.06 16 15 C 0.19 3.04 7.29 -38.96 -0.28 2.76 16 16 F -0.11 -1.88 15.55 2.25 0.04 -1.85 16 17 C -0.20 -3.27 5.88 -104.91 -0.62 -3.89 16 18 C 0.57 8.77 7.77 -12.40 -0.10 8.67 16 19 O -0.53 -9.65 15.34 5.30 0.08 -9.57 16 20 N -0.73 -8.68 5.51 -61.30 -0.34 -9.02 16 21 C 0.12 1.17 5.67 -4.04 -0.02 1.15 16 22 C -0.13 -0.92 5.33 -26.73 -0.14 -1.06 16 23 C -0.15 -0.95 5.67 -26.73 -0.15 -1.10 16 24 C 0.06 0.39 7.55 37.16 0.28 0.68 16 25 F -0.22 -2.14 17.36 2.25 0.04 -2.10 16 26 C 0.03 0.58 9.01 -39.19 -0.35 0.22 16 27 H 0.29 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.16 2.32 7.60 -52.49 -0.40 1.92 16 29 H 0.15 1.60 8.06 -52.48 -0.42 1.18 16 30 H 0.41 4.19 6.51 -40.82 -0.27 3.93 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.15 2.18 5.95 -52.49 -0.31 1.86 16 LS Contribution 360.66 15.07 5.44 5.44 Total: -1.00 -33.81 360.66 -8.02 -41.82 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -4.33 Total: 3.88 kcal Atomic # 6 Polarization: -26.96 SS G_CDS: -2.19 Total: -29.16 kcal Atomic # 7 Polarization: -31.24 SS G_CDS: 0.39 Total: -30.85 kcal Atomic # 8 Polarization: -59.98 SS G_CDS: -1.88 Total: -61.86 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.07 Total: -3.94 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.02 Total: 13.81 kcal Atomic # 16 Polarization: 61.35 SS G_CDS: -0.50 Total: 60.85 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.81 -8.02 -41.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352218965.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.497 kcal (2) G-P(sol) polarization free energy of solvation -33.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds