Wall clock time and date at job start Wed Apr 1 2020 04:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34729 * 116.99950 * 2 1 4 4 O 1.21477 * 119.99868 * 0.02562 * 3 2 1 5 5 C 1.47734 * 120.00391 * 179.97438 * 3 2 1 6 6 N 1.30535 * 121.48400 * 0.02578 * 5 3 2 7 7 S 1.56541 * 108.34717 * 179.97438 * 6 5 3 8 8 C 1.71984 * 96.04946 * 359.97438 * 7 6 5 9 9 N 1.38779 * 127.48033 * 179.97438 * 8 7 6 10 10 C 1.34779 * 119.99885 * 0.30951 * 9 8 7 11 11 O 1.21275 * 119.99962 * 359.72050 * 10 9 8 12 12 C 1.50696 * 119.99817 * 179.72308 * 10 9 8 13 13 C 1.50700 * 109.47366 * 179.97438 * 12 10 9 14 14 C 1.37633 * 120.13107 * 265.00288 * 13 12 10 15 15 C 1.38603 * 120.25300 * 179.97438 * 14 13 12 16 16 C 1.38657 * 120.49982 * 0.02562 * 15 14 13 17 17 C 1.37596 * 120.25161 * 0.02562 * 16 15 14 18 18 C 1.40705 * 120.12417 * 84.72222 * 13 12 10 19 19 C 1.41391 * 120.24619 * 359.97438 * 18 13 12 20 20 H 1.07998 * 120.00322 * 329.70431 * 19 18 13 21 21 C 1.39942 * 120.00050 * 149.69864 * 19 18 13 22 22 N 1.30822 * 120.00150 * 162.01214 * 21 19 18 23 23 Si 1.86800 * 120.00175 * 342.02091 * 21 19 18 24 24 H 1.48501 * 109.47504 * 95.39491 * 23 21 19 25 25 H 1.48498 * 109.47257 * 215.39958 * 23 21 19 26 26 H 1.48505 * 109.46748 * 335.39817 * 23 21 19 27 27 N 1.31369 * 105.03659 * 0.26531 * 8 7 6 28 28 H 1.08993 * 109.46693 * 60.00194 * 1 2 3 29 29 H 1.09001 * 109.46508 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47155 * 300.00114 * 1 2 3 31 31 H 0.97001 * 119.99763 * 180.02562 * 9 8 7 32 32 H 1.09008 * 109.47269 * 299.99452 * 12 10 9 33 33 H 1.09002 * 109.47525 * 59.99434 * 12 10 9 34 34 H 1.08003 * 119.87322 * 359.97438 * 14 13 12 35 35 H 1.07997 * 119.75511 * 179.97438 * 15 14 13 36 36 H 1.08010 * 119.87785 * 179.97438 * 16 15 14 37 37 H 1.08001 * 120.13486 * 179.97438 * 17 16 15 38 38 H 0.97000 * 120.00287 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4020 2.2192 0.0005 5 6 3.5390 1.2779 0.0006 6 7 4.2781 0.2020 0.0006 7 16 5.7818 0.6371 0.0006 8 6 5.4805 2.3304 -0.0002 9 7 6.4167 3.3547 0.0000 10 6 7.7329 3.0647 -0.0055 11 8 8.0991 1.9085 -0.0054 12 6 8.7496 4.1770 -0.0116 13 6 10.1373 3.5893 -0.0163 14 6 10.8188 3.4174 1.1670 15 6 12.0950 2.8767 1.1657 16 6 12.6999 2.5034 -0.0248 17 6 12.0378 2.6671 -1.2199 18 6 10.7389 3.2087 -1.2300 19 6 10.0458 3.3746 -2.4512 20 1 8.9678 3.3135 -2.4730 21 6 10.7568 3.6182 -3.6317 22 7 10.1839 3.4254 -4.7919 23 14 12.5239 4.2183 -3.5509 24 1 13.4459 3.0596 -3.6633 25 1 12.7775 5.1629 -4.6683 26 1 12.7532 4.9095 -2.2567 27 7 4.1717 2.4436 0.0055 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 6.1239 4.2795 -0.0001 32 1 8.6115 4.7906 -0.9020 33 1 8.6194 4.7932 0.8780 34 1 10.3574 3.7050 2.1002 35 1 12.6226 2.7457 2.0989 36 1 13.6949 2.0834 -0.0143 37 1 12.5109 2.3762 -2.1461 38 1 10.6768 3.5939 -5.6102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361442388.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:11 Heat of formation + Delta-G solvation = -31.264113 kcal Electronic energy + Delta-G solvation = -26644.808821 eV Core-core repulsion = 22579.859915 eV Total energy + Delta-G solvation = -4064.948906 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.32152 -40.29803 -39.69729 -37.87552 -36.63197 -35.24661 -33.71264 -32.58162 -31.80069 -30.45462 -28.71872 -27.66625 -26.36113 -25.04817 -23.23738 -21.75530 -21.45377 -20.82283 -19.81358 -19.03608 -18.20111 -17.49426 -17.22914 -16.97356 -16.91900 -16.56675 -16.00400 -15.75881 -15.04858 -14.53210 -14.16123 -14.00281 -13.97352 -13.76026 -13.35913 -12.82333 -12.57694 -12.32653 -12.17618 -12.02895 -11.97746 -11.76215 -11.58332 -11.39000 -11.05310 -10.97235 -10.91631 -10.85488 -10.37095 -10.24281 -10.06173 -9.91865 -9.83405 -9.69945 -9.23205 -8.70932 -7.74501 -7.65701 -7.04839 -4.61804 0.26163 0.81700 1.31832 1.57351 1.95860 2.41259 2.58299 2.60400 2.86563 2.93430 3.05278 3.15297 3.24399 3.89304 4.30433 4.39983 4.81944 4.85563 4.91550 4.92626 5.09242 5.25654 5.34092 5.58420 5.66310 5.89256 5.94290 5.95663 6.06394 6.08531 6.41864 6.59459 6.70840 6.82798 7.07659 7.21745 7.32157 7.52418 7.53742 7.62582 7.76494 7.92956 8.00214 8.22279 8.53169 8.69435 9.96756 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.018242 B = 0.002675 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.563823 B =10462.827270 C =11194.377243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.336 6.336 3 C 0.562 3.438 4 O -0.474 6.474 5 C 0.230 3.770 6 N -0.541 5.541 7 S 0.547 5.453 8 C 0.211 3.789 9 N -0.614 5.614 10 C 0.515 3.485 11 O -0.478 6.478 12 C -0.062 4.062 13 C -0.183 4.183 14 C -0.062 4.062 15 C -0.243 4.243 16 C -0.075 4.075 17 C -0.231 4.231 18 C 0.111 3.889 19 C -0.446 4.446 20 H 0.088 0.912 21 C 0.085 3.915 22 N -0.804 5.804 23 Si 0.910 3.090 24 H -0.270 1.270 25 H -0.291 1.291 26 H -0.243 1.243 27 N -0.479 5.479 28 H 0.066 0.934 29 H 0.107 0.893 30 H 0.066 0.934 31 H 0.426 0.574 32 H 0.113 0.887 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.901 -1.503 8.077 12.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.250 6.250 3 C 0.398 3.602 4 O -0.358 6.358 5 C -0.059 4.059 6 N -0.390 5.390 7 S 0.688 5.312 8 C -0.164 4.164 9 N -0.266 5.266 10 C 0.303 3.697 11 O -0.347 6.347 12 C -0.101 4.101 13 C -0.185 4.185 14 C -0.080 4.080 15 C -0.262 4.262 16 C -0.093 4.093 17 C -0.250 4.250 18 C 0.108 3.892 19 C -0.474 4.474 20 H 0.106 0.894 21 C -0.135 4.135 22 N -0.427 5.427 23 Si 0.737 3.263 24 H -0.197 1.197 25 H -0.219 1.219 26 H -0.166 1.166 27 N -0.211 5.211 28 H 0.085 0.915 29 H 0.125 0.875 30 H 0.085 0.915 31 H 0.265 0.735 32 H 0.131 0.869 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.554 -3.067 7.786 12.701 hybrid contribution -0.370 1.581 -0.304 1.652 sum -9.924 -1.486 7.481 12.517 Atomic orbital electron populations 1.23391 0.75282 1.04173 1.02874 1.86637 1.23634 1.30929 1.83828 1.19180 0.85301 0.82027 0.73664 1.90884 1.65068 1.35962 1.43853 1.21003 0.94584 0.82727 1.07558 1.73230 1.08740 1.31927 1.25073 1.82968 1.00701 0.93371 1.54166 1.26135 0.90022 1.00386 0.99898 1.43224 1.04144 1.08173 1.71093 1.22152 0.80437 0.93074 0.74051 1.90675 1.77831 1.21392 1.44780 1.20278 0.90771 0.94460 1.04599 1.18923 0.94633 1.11046 0.93852 1.20438 0.94568 0.97451 0.95576 1.20347 0.97253 1.12141 0.96453 1.20643 0.97685 0.97864 0.93147 1.21021 0.98003 1.09444 0.96534 1.17466 0.91022 0.88173 0.92519 1.19395 0.96146 1.42134 0.89729 0.89442 1.26170 1.00581 0.92106 0.94606 1.69694 1.39745 1.34211 0.99072 0.86328 0.81495 0.79325 0.79180 1.19651 1.21877 1.16594 1.68479 1.03729 1.25414 1.23458 0.91494 0.87511 0.91550 0.73484 0.86872 0.88880 0.88884 0.88841 0.88864 0.88194 0.90350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.57 101.05 1.07 1.36 16 2 O -0.34 -4.25 10.44 -40.57 -0.42 -4.68 16 3 C 0.56 8.44 7.97 34.61 0.28 8.72 16 4 O -0.47 -7.78 16.74 -19.25 -0.32 -8.10 16 5 C 0.23 3.68 7.46 -158.93 -1.19 2.50 16 6 N -0.54 -8.44 11.29 21.17 0.24 -8.20 16 7 S 0.55 8.25 20.66 -107.50 -2.22 6.03 16 8 C 0.21 3.21 8.47 -86.13 -0.73 2.48 16 9 N -0.61 -8.31 5.40 -12.53 -0.07 -8.38 16 10 C 0.51 8.25 7.38 -10.99 -0.08 8.17 16 11 O -0.48 -9.18 13.78 5.56 0.08 -9.10 16 12 C -0.06 -0.96 5.19 -29.04 -0.15 -1.11 16 13 C -0.18 -3.65 4.43 -103.91 -0.46 -4.11 16 14 C -0.06 -1.17 9.66 -39.67 -0.38 -1.55 16 15 C -0.24 -4.70 10.05 -39.29 -0.39 -5.10 16 16 C -0.08 -1.55 10.02 -39.66 -0.40 -1.94 16 17 C -0.23 -5.27 7.17 -38.87 -0.28 -5.55 16 18 C 0.11 2.57 5.10 -106.82 -0.54 2.02 16 19 C -0.45 -10.93 8.56 -37.75 -0.32 -11.25 16 20 H 0.09 2.22 6.99 -52.49 -0.37 1.86 16 21 C 0.09 2.08 5.41 -17.34 -0.09 1.99 16 22 N -0.80 -20.30 13.93 55.55 0.77 -19.53 16 23 Si 0.91 19.58 24.52 -169.99 -4.17 15.41 16 24 H -0.27 -5.75 6.71 56.52 0.38 -5.37 16 25 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.24 -5.28 6.85 56.52 0.39 -4.90 16 27 N -0.48 -7.74 10.71 -24.68 -0.26 -8.01 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.43 4.40 8.82 -40.82 -0.36 4.04 16 32 H 0.11 1.74 7.15 -51.92 -0.37 1.37 16 33 H 0.09 1.08 8.05 -51.93 -0.42 0.66 16 34 H 0.09 1.47 8.06 -52.48 -0.42 1.05 16 35 H 0.09 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 37 H 0.10 2.30 4.74 -52.49 -0.25 2.05 16 38 H 0.29 6.59 8.30 -40.82 -0.34 6.25 16 LS Contribution 348.22 15.07 5.25 5.25 Total: -1.00 -30.36 348.22 -8.28 -38.64 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -3.47 Total: 4.02 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -3.68 Total: -3.36 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: 0.68 Total: -44.11 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.67 Total: -21.88 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.17 Total: 15.41 kcal Atomic # 16 Polarization: 8.25 SS G_CDS: -2.22 Total: 6.03 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.36 -8.28 -38.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361442388.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.376 kcal (2) G-P(sol) polarization free energy of solvation -30.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds