Wall clock time and date at job start Wed Apr 1 2020 04:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34729 * 116.99950 * 2 1 4 4 O 1.21477 * 119.99868 * 0.02562 * 3 2 1 5 5 C 1.47734 * 120.00391 * 179.97438 * 3 2 1 6 6 N 1.30535 * 121.48400 * 0.02578 * 5 3 2 7 7 S 1.56541 * 108.34717 * 179.97438 * 6 5 3 8 8 C 1.71984 * 96.04946 * 359.97438 * 7 6 5 9 9 N 1.38779 * 127.48033 * 179.97438 * 8 7 6 10 10 C 1.34779 * 119.99885 * 0.30951 * 9 8 7 11 11 O 1.21275 * 119.99962 * 359.72050 * 10 9 8 12 12 C 1.50696 * 119.99817 * 179.72308 * 10 9 8 13 13 C 1.50700 * 109.47366 * 179.97438 * 12 10 9 14 14 C 1.37633 * 120.13107 * 265.00288 * 13 12 10 15 15 C 1.38603 * 120.25300 * 179.97438 * 14 13 12 16 16 C 1.38657 * 120.49982 * 0.02562 * 15 14 13 17 17 C 1.37596 * 120.25161 * 0.02562 * 16 15 14 18 18 C 1.40705 * 120.12417 * 84.72222 * 13 12 10 19 19 C 1.41391 * 120.24619 * 359.97438 * 18 13 12 20 20 H 1.07998 * 120.00322 * 329.70431 * 19 18 13 21 21 C 1.39942 * 120.00050 * 149.69864 * 19 18 13 22 22 N 1.30822 * 120.00150 * 162.01214 * 21 19 18 23 23 Si 1.86800 * 120.00175 * 342.02091 * 21 19 18 24 24 H 1.48501 * 109.47504 * 95.39491 * 23 21 19 25 25 H 1.48498 * 109.47257 * 215.39958 * 23 21 19 26 26 H 1.48505 * 109.46748 * 335.39817 * 23 21 19 27 27 N 1.31369 * 105.03659 * 0.26531 * 8 7 6 28 28 H 1.08993 * 109.46693 * 60.00194 * 1 2 3 29 29 H 1.09001 * 109.46508 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47155 * 300.00114 * 1 2 3 31 31 H 0.97001 * 119.99763 * 180.02562 * 9 8 7 32 32 H 1.09008 * 109.47269 * 299.99452 * 12 10 9 33 33 H 1.09002 * 109.47525 * 59.99434 * 12 10 9 34 34 H 1.08003 * 119.87322 * 359.97438 * 14 13 12 35 35 H 1.07997 * 119.75511 * 179.97438 * 15 14 13 36 36 H 1.08010 * 119.87785 * 179.97438 * 16 15 14 37 37 H 1.08001 * 120.13486 * 179.97438 * 17 16 15 38 38 H 0.97000 * 120.00287 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4020 2.2192 0.0005 5 6 3.5390 1.2779 0.0006 6 7 4.2781 0.2020 0.0006 7 16 5.7818 0.6371 0.0006 8 6 5.4805 2.3304 -0.0002 9 7 6.4167 3.3547 0.0000 10 6 7.7329 3.0647 -0.0055 11 8 8.0991 1.9085 -0.0054 12 6 8.7496 4.1770 -0.0116 13 6 10.1373 3.5893 -0.0163 14 6 10.8188 3.4174 1.1670 15 6 12.0950 2.8767 1.1657 16 6 12.6999 2.5034 -0.0248 17 6 12.0378 2.6671 -1.2199 18 6 10.7389 3.2087 -1.2300 19 6 10.0458 3.3746 -2.4512 20 1 8.9678 3.3135 -2.4730 21 6 10.7568 3.6182 -3.6317 22 7 10.1839 3.4254 -4.7919 23 14 12.5239 4.2183 -3.5509 24 1 13.4459 3.0596 -3.6633 25 1 12.7775 5.1629 -4.6683 26 1 12.7532 4.9095 -2.2567 27 7 4.1717 2.4436 0.0055 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 6.1239 4.2795 -0.0001 32 1 8.6115 4.7906 -0.9020 33 1 8.6194 4.7932 0.8780 34 1 10.3574 3.7050 2.1002 35 1 12.6226 2.7457 2.0989 36 1 13.6949 2.0834 -0.0143 37 1 12.5109 2.3762 -2.1461 38 1 10.6768 3.5939 -5.6102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361442388.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:11 Heat of formation + Delta-G solvation = -50.739430 kcal Electronic energy + Delta-G solvation = -26645.653334 eV Core-core repulsion = 22579.859915 eV Total energy + Delta-G solvation = -4065.793419 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.50426 -41.54031 -40.87558 -39.43949 -37.70261 -36.51145 -35.45505 -33.91887 -33.15322 -32.12271 -29.67561 -29.02624 -27.47202 -26.67451 -24.44745 -23.19965 -22.89576 -22.02941 -21.25889 -20.27365 -19.39648 -19.21600 -18.43682 -18.03273 -18.02286 -17.81289 -17.43484 -17.13034 -16.37173 -16.12125 -15.50609 -15.45278 -15.22845 -15.05768 -14.52663 -14.33716 -13.85719 -13.73595 -13.59017 -13.21963 -13.12364 -13.05770 -12.96978 -12.74164 -12.66303 -12.49130 -12.09633 -11.97663 -11.94099 -11.51798 -11.49895 -11.35128 -11.29808 -11.21305 -10.94110 -9.91742 -9.35708 -9.29044 -8.83846 -6.42333 -0.95480 -0.37693 0.11248 0.40154 0.68987 0.93084 1.01143 1.31574 1.35109 1.43553 1.52466 1.70167 1.74390 2.15486 2.68459 3.24457 3.49969 3.71376 3.81538 3.91508 4.22961 4.26938 4.30901 4.31515 4.50284 4.60689 4.66650 4.68702 4.78446 4.96480 4.97079 5.00585 5.20690 5.40614 5.54367 5.71480 5.90733 5.98896 6.09913 6.11999 6.31898 6.42307 6.49980 6.70784 6.81624 6.95390 8.23103 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.018242 B = 0.002675 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.563823 B =10462.827270 C =11194.377243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.340 6.340 3 C 0.564 3.436 4 O -0.494 6.494 5 C 0.219 3.781 6 N -0.544 5.544 7 S 0.552 5.448 8 C 0.206 3.794 9 N -0.598 5.598 10 C 0.520 3.480 11 O -0.514 6.514 12 C -0.062 4.062 13 C -0.179 4.179 14 C -0.069 4.069 15 C -0.231 4.231 16 C -0.088 4.088 17 C -0.256 4.256 18 C 0.087 3.913 19 C -0.467 4.467 20 H 0.065 0.935 21 C 0.050 3.950 22 N -0.851 5.851 23 Si 0.958 3.042 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.246 1.246 27 N -0.488 5.488 28 H 0.070 0.930 29 H 0.140 0.860 30 H 0.073 0.927 31 H 0.442 0.558 32 H 0.113 0.887 33 H 0.143 0.857 34 H 0.134 0.866 35 H 0.126 0.874 36 H 0.117 0.883 37 H 0.088 0.912 38 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.820 -1.045 10.703 14.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.255 6.255 3 C 0.402 3.598 4 O -0.379 6.379 5 C -0.070 4.070 6 N -0.393 5.393 7 S 0.693 5.307 8 C -0.169 4.169 9 N -0.251 5.251 10 C 0.309 3.691 11 O -0.385 6.385 12 C -0.101 4.101 13 C -0.180 4.180 14 C -0.087 4.087 15 C -0.250 4.250 16 C -0.106 4.106 17 C -0.275 4.275 18 C 0.084 3.916 19 C -0.497 4.497 20 H 0.083 0.917 21 C -0.165 4.165 22 N -0.477 5.477 23 Si 0.783 3.217 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.170 1.170 27 N -0.220 5.220 28 H 0.089 0.911 29 H 0.158 0.842 30 H 0.091 0.909 31 H 0.284 0.716 32 H 0.131 0.869 33 H 0.161 0.839 34 H 0.151 0.849 35 H 0.144 0.856 36 H 0.135 0.865 37 H 0.105 0.895 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.497 -2.595 10.422 14.337 hybrid contribution -0.435 1.354 -0.864 1.664 sum -9.932 -1.241 9.558 13.839 Atomic orbital electron populations 1.23810 0.72684 1.06604 1.03428 1.86630 1.26146 1.29584 1.83106 1.19126 0.84944 0.82475 0.73295 1.90865 1.65328 1.36691 1.45065 1.21292 0.95375 0.82735 1.07640 1.73210 1.08964 1.32024 1.25057 1.82976 1.00335 0.93438 1.53904 1.26212 0.90043 1.00745 0.99893 1.42983 1.03214 1.08752 1.70149 1.22128 0.81054 0.92558 0.73321 1.90669 1.78530 1.22697 1.46581 1.20370 0.88316 0.94385 1.07031 1.19386 0.96363 1.09120 0.93176 1.20928 0.94460 0.96582 0.96698 1.20880 0.97401 1.09509 0.97202 1.20983 0.98896 0.97927 0.92843 1.21145 0.98524 1.10646 0.97213 1.17709 0.91585 0.88981 0.93289 1.19345 0.95170 1.44324 0.90865 0.91727 1.26730 1.03185 0.92196 0.94358 1.69739 1.41157 1.37211 0.99640 0.85587 0.78387 0.78804 0.78888 1.19775 1.21145 1.16965 1.68494 1.04009 1.25743 1.23771 0.91129 0.84159 0.90864 0.71571 0.86870 0.83914 0.84867 0.85603 0.86548 0.89452 0.90000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.57 113.37 1.20 1.59 16 2 O -0.34 -8.27 10.44 -56.39 -0.59 -8.86 16 3 C 0.56 16.68 7.97 70.33 0.56 17.24 16 4 O -0.49 -15.99 16.74 19.91 0.33 -15.66 16 5 C 0.22 6.91 7.46 137.96 1.03 7.94 16 6 N -0.54 -16.78 11.29 -86.93 -0.98 -17.76 16 7 S 0.55 16.50 20.66 -56.49 -1.17 15.33 16 8 C 0.21 6.13 8.47 178.78 1.51 7.64 16 9 N -0.60 -15.30 5.40 -311.93 -1.68 -16.98 16 10 C 0.52 15.91 7.38 87.66 0.65 16.56 16 11 O -0.51 -19.32 13.78 -3.01 -0.04 -19.37 16 12 C -0.06 -1.77 5.19 29.10 0.15 -1.62 16 13 C -0.18 -6.74 4.43 -19.40 -0.09 -6.83 16 14 C -0.07 -2.31 9.66 22.21 0.21 -2.09 16 15 C -0.23 -8.00 10.05 22.46 0.23 -7.78 16 16 C -0.09 -3.43 10.02 22.22 0.22 -3.21 16 17 C -0.26 -11.57 7.17 22.73 0.16 -11.41 16 18 C 0.09 3.99 5.10 -21.29 -0.11 3.89 16 19 C -0.47 -23.60 8.56 23.46 0.20 -23.40 16 20 H 0.06 3.44 6.99 -2.91 -0.02 3.42 16 21 C 0.05 2.52 5.41 85.26 0.46 2.98 16 22 N -0.85 -44.94 13.93 21.83 0.30 -44.64 16 23 Si 0.96 41.21 24.52 68.60 1.68 42.90 16 24 H -0.27 -11.52 6.71 99.48 0.67 -10.86 16 25 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 26 H -0.25 -10.54 6.85 99.48 0.68 -9.85 16 27 N -0.49 -15.48 10.71 -232.00 -2.49 -17.97 16 28 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.44 8.25 8.82 -92.71 -0.82 7.43 16 32 H 0.11 3.33 7.15 -2.38 -0.02 3.31 16 33 H 0.14 2.63 8.05 -2.39 -0.02 2.61 16 34 H 0.13 3.42 8.06 -2.91 -0.02 3.39 16 35 H 0.13 3.56 8.06 -2.91 -0.02 3.53 16 36 H 0.12 3.87 8.06 -2.91 -0.02 3.85 16 37 H 0.09 4.08 4.74 -2.91 -0.01 4.06 16 38 H 0.29 13.98 8.30 -92.71 -0.77 13.21 16 Total: -1.00 -67.41 348.22 2.04 -65.38 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 0.27 Total: 16.11 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: 6.39 Total: 1.51 kcal Atomic # 7 Polarization: -92.50 SS G_CDS: -4.85 Total: -97.34 kcal Atomic # 8 Polarization: -43.59 SS G_CDS: -0.30 Total: -43.88 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 1.68 Total: 42.90 kcal Atomic # 16 Polarization: 16.50 SS G_CDS: -1.17 Total: 15.33 kcal Total: -67.41 2.04 -65.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361442388.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.640 kcal (2) G-P(sol) polarization free energy of solvation -67.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds