Wall clock time and date at job start Wed Apr 1 2020 04:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42097 * 110.54398 * 2 1 4 4 O 1.42107 * 110.54397 * 223.25211 * 2 1 3 5 5 C 1.76197 * 104.45324 * 111.62563 * 2 1 3 6 6 C 1.38627 * 120.47246 * 245.08486 * 5 2 1 7 7 C 1.38585 * 118.48804 * 179.72191 * 6 5 2 8 8 C 1.38604 * 119.35976 * 0.25732 * 7 6 5 9 9 N 1.31502 * 120.90098 * 0.02562 * 8 7 6 10 10 C 1.32764 * 121.63918 * 359.97438 * 9 8 7 11 11 C 1.48124 * 119.72206 * 179.97438 * 10 9 8 12 12 O 1.21518 * 119.99612 * 176.42996 * 11 10 9 13 13 N 1.34774 * 120.00118 * 356.43100 * 11 10 9 14 14 C 1.39372 * 120.00097 * 185.29336 * 13 11 10 15 15 C 1.38630 * 119.58360 * 185.61729 * 14 13 11 16 16 C 1.40800 * 118.79128 * 179.75810 * 15 14 13 17 17 C 1.41542 * 120.99281 * 180.26004 * 16 15 14 18 18 H 1.08006 * 119.99596 * 207.06105 * 17 16 15 19 19 C 1.40033 * 120.00272 * 27.05574 * 17 16 15 20 20 N 1.30741 * 119.99973 * 7.82113 * 19 17 16 21 21 Si 1.86799 * 119.99847 * 187.82084 * 19 17 16 22 22 H 1.48508 * 109.47073 * 94.99848 * 21 19 17 23 23 H 1.48497 * 109.47130 * 214.99738 * 21 19 17 24 24 H 1.48497 * 109.47708 * 335.00111 * 21 19 17 25 25 C 1.41177 * 118.01272 * 0.50106 * 16 15 14 26 26 C 1.37589 * 119.01504 * 359.75508 * 25 16 15 27 27 N 1.32078 * 121.11821 * 359.97438 * 26 25 16 28 28 H 1.09006 * 109.46567 * 315.29462 * 1 2 3 29 29 H 1.08995 * 109.47055 * 75.29078 * 1 2 3 30 30 H 1.08998 * 109.46938 * 195.29241 * 1 2 3 31 31 H 1.07998 * 120.75020 * 359.97438 * 6 5 2 32 32 H 1.08004 * 120.32267 * 180.27289 * 7 6 5 33 33 H 1.07993 * 119.55405 * 180.02562 * 8 7 6 34 34 H 0.97005 * 120.00261 * 5.28506 * 13 11 10 35 35 H 1.07998 * 120.59988 * 0.02562 * 15 14 13 36 36 H 0.96998 * 119.99986 * 179.97438 * 20 19 17 37 37 H 1.07995 * 120.49391 * 179.78283 * 25 16 15 38 38 H 1.08006 * 119.44377 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9692 -0.9118 5 6 2.2538 -0.6288 1.5861 6 6 2.9167 0.1739 2.5015 7 6 3.2376 -0.3608 3.7391 8 6 2.8943 -1.6736 4.0218 9 7 2.2705 -2.4150 3.1328 10 6 1.9450 -1.9413 1.9360 11 6 1.2430 -2.8141 0.9667 12 8 0.8851 -2.3670 -0.1050 13 7 1.0013 -4.1040 1.2735 14 6 0.4409 -4.9535 0.3213 15 6 0.0878 -6.2453 0.6799 16 6 -0.4819 -7.0876 -0.2940 17 6 -0.8647 -8.4130 0.0226 18 1 -0.8805 -9.1692 -0.7484 19 6 -1.2226 -8.7439 1.3353 20 7 -1.3518 -7.8035 2.2344 21 14 -1.5156 -10.5288 1.8019 22 1 -0.2705 -11.1017 2.3737 23 1 -2.6038 -10.6048 2.8095 24 1 -1.9052 -11.2989 0.5934 25 6 -0.6550 -6.5725 -1.5970 26 6 -0.2687 -5.2783 -1.8597 27 7 0.2571 -4.5181 -0.9164 28 1 -0.3633 0.7305 0.7230 29 1 -0.3633 0.2609 -0.9939 30 1 -0.3633 -0.9913 0.2710 31 1 3.1734 1.1941 2.2572 32 1 3.7500 0.2396 4.4763 33 1 3.1425 -2.0934 4.9854 34 1 1.2175 -4.4412 2.1569 35 1 0.2428 -6.5975 1.6889 36 1 -1.6001 -8.0326 3.1436 37 1 -1.0848 -7.1849 -2.3758 38 1 -0.3984 -4.8770 -2.8540 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361468062.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:43 Heat of formation + Delta-G solvation = -1.574309 kcal Electronic energy + Delta-G solvation = -27857.293335 eV Core-core repulsion = 23793.631875 eV Total energy + Delta-G solvation = -4063.661460 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -40.89798 -39.38396 -37.96118 -36.73399 -35.66332 -34.59839 -33.92716 -32.92616 -31.93513 -30.55569 -29.30891 -28.67385 -26.05153 -25.14791 -24.28055 -22.13806 -21.83174 -20.13030 -19.12549 -18.36284 -17.79131 -17.39985 -16.89418 -15.95801 -15.88723 -15.67669 -15.39164 -15.27065 -15.13809 -14.41867 -14.23017 -13.93059 -13.83322 -13.66294 -13.29029 -13.02228 -12.93726 -12.73172 -12.60793 -12.19952 -11.86368 -11.67013 -11.45434 -11.37423 -11.23483 -10.95005 -10.73999 -10.48481 -10.34789 -10.17171 -10.04673 -9.82252 -9.71272 -9.67894 -9.44595 -8.00466 -7.85228 -7.09849 -6.78951 -4.66798 0.00148 0.32805 0.67139 2.36299 2.76128 2.90362 2.98245 3.00598 3.04222 3.14353 3.23298 3.62492 3.83503 3.89325 3.94902 4.26966 4.44639 4.60231 4.66197 4.67869 4.89188 5.00864 5.06834 5.29555 5.46262 5.56582 5.62434 5.89040 5.97579 6.08743 6.50784 6.56000 6.74426 6.89841 7.08858 7.25266 7.29737 7.40154 7.65218 7.87571 8.11122 8.29389 8.55148 8.69959 8.73016 9.59835 10.07231 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.017311 B = 0.003220 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.092882 B = 8694.645935 C = 9999.004422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.636 4.636 2 S 2.514 3.486 3 O -0.961 6.961 4 O -0.897 6.897 5 C -0.670 4.670 6 C 0.013 3.987 7 C -0.178 4.178 8 C 0.146 3.854 9 N -0.470 5.470 10 C 0.183 3.817 11 C 0.534 3.466 12 O -0.452 6.452 13 N -0.623 5.623 14 C 0.326 3.674 15 C -0.229 4.229 16 C 0.140 3.860 17 C -0.453 4.453 18 H 0.082 0.918 19 C 0.074 3.926 20 N -0.796 5.796 21 Si 0.916 3.084 22 H -0.268 1.268 23 H -0.277 1.277 24 H -0.261 1.261 25 C -0.277 4.277 26 C 0.119 3.881 27 N -0.546 5.546 28 H 0.115 0.885 29 H 0.131 0.869 30 H 0.150 0.850 31 H 0.162 0.838 32 H 0.149 0.851 33 H 0.171 0.829 34 H 0.420 0.580 35 H 0.136 0.864 36 H 0.281 0.719 37 H 0.104 0.896 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.942 13.009 7.024 15.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.787 4.787 2 S 2.689 3.311 3 O -0.958 6.958 4 O -0.894 6.894 5 C -0.756 4.756 6 C -0.013 4.013 7 C -0.199 4.199 8 C -0.012 4.012 9 N -0.182 5.182 10 C 0.042 3.958 11 C 0.316 3.684 12 O -0.323 6.323 13 N -0.268 5.268 14 C 0.102 3.898 15 C -0.255 4.255 16 C 0.132 3.868 17 C -0.485 4.485 18 H 0.100 0.900 19 C -0.143 4.143 20 N -0.422 5.422 21 Si 0.741 3.259 22 H -0.193 1.193 23 H -0.202 1.202 24 H -0.185 1.185 25 C -0.301 4.301 26 C -0.036 4.036 27 N -0.265 5.265 28 H 0.133 0.867 29 H 0.150 0.850 30 H 0.168 0.832 31 H 0.179 0.821 32 H 0.167 0.833 33 H 0.188 0.812 34 H 0.258 0.742 35 H 0.154 0.846 36 H 0.092 0.908 37 H 0.122 0.878 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.255 13.627 5.896 15.750 hybrid contribution -0.476 -1.293 1.775 2.247 sum 4.779 12.334 7.671 15.291 Atomic orbital electron populations 1.30330 1.24312 1.12844 1.11205 1.05052 0.78534 0.73754 0.73719 1.93522 1.78669 1.37671 1.85934 1.93694 1.77167 1.59750 1.58798 1.31918 1.13784 1.03680 1.26181 1.21466 0.88962 0.99704 0.91150 1.22472 1.01866 0.97420 0.98104 1.23186 0.89656 0.90459 0.97911 1.67753 1.11320 1.37541 1.01544 1.21175 0.92622 0.90313 0.91704 1.18052 0.81287 0.83148 0.85903 1.90888 1.47874 1.72227 1.21330 1.43061 1.59330 1.08322 1.16067 1.18168 0.95861 0.87968 0.87791 1.21737 1.08242 0.92532 1.02948 1.17591 0.86347 0.92876 0.89984 1.19606 1.39510 0.94935 0.94420 0.89975 1.25954 0.92727 0.99654 0.96014 1.69722 1.34358 1.34114 1.04041 0.86162 0.78769 0.81804 0.79193 1.19319 1.20166 1.18488 1.21968 1.12210 0.97111 0.98809 1.21767 0.94879 0.90689 0.96248 1.67163 1.22184 1.37662 0.99504 0.86672 0.85016 0.83206 0.82069 0.83277 0.81188 0.74233 0.84642 0.90773 0.87820 0.85599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -7.60 10.02 101.05 1.01 -6.59 16 2 S 2.51 35.84 5.14 -107.50 -0.55 35.28 16 3 O -0.96 -14.05 16.82 -57.54 -0.97 -15.02 16 4 O -0.90 -17.12 14.93 -67.46 -1.01 -18.12 16 5 C -0.67 -9.05 5.63 -39.04 -0.22 -9.27 16 6 C 0.01 0.14 9.61 -39.31 -0.38 -0.24 16 7 C -0.18 -1.44 10.11 -39.32 -0.40 -1.84 16 8 C 0.15 1.39 11.18 -17.56 -0.20 1.19 16 9 N -0.47 -6.36 9.55 -9.80 -0.09 -6.45 16 10 C 0.18 2.83 6.74 -83.01 -0.56 2.27 16 11 C 0.53 10.19 7.30 -12.20 -0.09 10.10 16 12 O -0.45 -9.36 7.37 -19.65 -0.14 -9.50 16 13 N -0.62 -12.56 5.37 -12.27 -0.07 -12.62 16 14 C 0.33 7.80 7.40 -154.77 -1.15 6.66 16 15 C -0.23 -5.73 8.61 -38.47 -0.33 -6.06 16 16 C 0.14 3.62 5.60 -106.55 -0.60 3.02 16 17 C -0.45 -11.44 9.14 -37.65 -0.34 -11.78 16 18 H 0.08 1.99 7.86 -52.48 -0.41 1.57 16 19 C 0.07 1.77 5.34 -17.34 -0.09 1.67 16 20 N -0.80 -19.30 10.65 55.55 0.59 -18.71 16 21 Si 0.92 17.75 29.57 -169.99 -5.03 12.72 16 22 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 23 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 24 H -0.26 -5.03 7.11 56.52 0.40 -4.62 16 25 C -0.28 -6.64 9.90 -38.70 -0.38 -7.02 16 26 C 0.12 2.77 11.15 -17.68 -0.20 2.58 16 27 N -0.55 -13.53 7.89 -12.54 -0.10 -13.63 16 28 H 0.11 0.99 8.14 -51.92 -0.42 0.57 16 29 H 0.13 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.15 2.14 5.48 -51.93 -0.28 1.86 16 31 H 0.16 1.32 7.32 -52.49 -0.38 0.94 16 32 H 0.15 0.63 8.06 -52.48 -0.42 0.21 16 33 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.42 7.48 8.03 -40.82 -0.33 7.15 16 35 H 0.14 3.39 6.09 -52.49 -0.32 3.07 16 36 H 0.28 6.19 8.29 -40.82 -0.34 5.85 16 37 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 38 H 0.13 2.56 8.06 -52.48 -0.42 2.13 16 LS Contribution 337.94 15.07 5.09 5.09 Total: -1.00 -34.18 337.94 -9.59 -43.77 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -3.40 Total: 12.50 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -3.92 Total: -15.32 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: 0.33 Total: -51.41 kcal Atomic # 8 Polarization: -40.52 SS G_CDS: -2.12 Total: -42.64 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.03 Total: 12.72 kcal Atomic # 16 Polarization: 35.84 SS G_CDS: -0.55 Total: 35.28 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.18 -9.59 -43.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361468062.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.197 kcal (2) G-P(sol) polarization free energy of solvation -34.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds