Wall clock time and date at job start Wed Apr 1 2020 04:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45196 * 109.47522 * 2 1 4 4 C 1.34761 * 117.00385 * 180.02562 * 3 2 1 5 5 O 1.21473 * 119.99736 * 359.97438 * 4 3 2 6 6 C 1.47592 * 120.00295 * 180.02562 * 4 3 2 7 7 N 1.30311 * 124.73769 * 359.96770 * 6 4 3 8 8 C 1.30294 * 117.41177 * 180.02562 * 7 6 4 9 9 C 1.37252 * 114.00215 * 0.02562 * 8 7 6 10 10 C 1.47109 * 126.16004 * 179.97438 * 9 8 7 11 11 O 1.21627 * 119.99661 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00162 * 180.02562 * 10 9 8 13 13 C 1.39142 * 119.99724 * 183.70489 * 12 10 9 14 14 C 1.39707 * 119.58024 * 338.96821 * 13 12 10 15 15 C 1.38647 * 119.49397 * 180.02562 * 14 13 12 16 16 C 1.38352 * 118.67212 * 0.02562 * 15 14 13 17 17 C 1.40578 * 119.13789 * 359.97438 * 16 15 14 18 18 C 1.41330 * 119.78909 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00282 * 5.12781 * 18 17 16 20 20 C 1.40031 * 120.00134 * 185.12704 * 18 17 16 21 21 N 1.30740 * 120.00271 * 184.82104 * 20 18 17 22 22 Si 1.86803 * 120.00001 * 4.82522 * 20 18 17 23 23 H 1.48497 * 109.47282 * 180.02562 * 22 20 18 24 24 H 1.48508 * 109.46755 * 299.99943 * 22 20 18 25 25 H 1.48498 * 109.47067 * 59.99808 * 22 20 18 26 26 N 1.31928 * 119.57709 * 159.27181 * 13 12 10 27 27 S 1.70932 * 124.74218 * 180.30425 * 6 4 3 28 28 H 1.08998 * 109.47720 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47052 * 299.99843 * 1 2 3 30 30 H 1.09005 * 109.47211 * 60.00158 * 1 2 3 31 31 H 1.09005 * 109.46859 * 239.99727 * 2 1 3 32 32 H 1.09000 * 109.47301 * 120.00570 * 2 1 3 33 33 H 1.08003 * 123.00056 * 180.02562 * 8 7 6 34 34 H 0.96995 * 120.00068 * 3.70910 * 12 10 9 35 35 H 1.07995 * 120.25309 * 0.04942 * 14 13 12 36 36 H 1.07997 * 120.66661 * 179.97438 * 15 14 13 37 37 H 1.08001 * 120.43138 * 180.02562 * 16 15 14 38 38 H 0.97005 * 119.99854 * 354.99651 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3500 1.5455 -0.0005 5 8 4.0900 0.5821 -0.0005 6 6 3.9142 2.9093 0.0000 7 7 3.2086 4.0048 0.0004 8 6 3.8561 5.1354 0.0003 9 6 5.2216 4.9968 -0.0007 10 6 6.2052 6.0907 -0.0016 11 8 5.8284 7.2472 -0.0009 12 7 7.5237 5.8115 -0.0031 13 6 8.4534 6.8438 0.0740 14 6 8.0761 8.1401 -0.2852 15 6 9.0041 9.1673 -0.2083 16 6 10.2849 8.8736 0.2248 17 6 10.6033 7.5491 0.5720 18 6 11.9072 7.2339 1.0166 19 1 12.6312 8.0209 1.1679 20 6 12.2606 5.9011 1.2608 21 7 13.4346 5.6172 1.7613 22 14 11.0547 4.5287 0.8714 23 1 11.6647 3.2202 1.2193 24 1 9.8130 4.7215 1.6629 25 1 10.7274 4.5534 -0.5768 26 7 9.6818 6.5849 0.4796 27 16 5.5845 3.2725 -0.0080 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.3624 6.0960 0.0010 34 1 7.8244 4.8910 -0.0579 35 1 7.0691 8.3406 -0.6199 36 1 8.7329 10.1763 -0.4817 37 1 11.0302 9.6520 0.2959 38 1 14.0878 6.3217 1.8958 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361869389.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:15 Heat of formation + Delta-G solvation = -33.239474 kcal Electronic energy + Delta-G solvation = -26197.337623 eV Core-core repulsion = 22132.303059 eV Total energy + Delta-G solvation = -4065.034564 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.04472 -40.55525 -39.65099 -38.18817 -37.12677 -34.85957 -33.65382 -32.37097 -31.33660 -31.23285 -29.62975 -27.59591 -25.47178 -24.18911 -23.51026 -22.45764 -21.94458 -21.00573 -20.33747 -19.17866 -18.31925 -18.10655 -17.25447 -17.15377 -16.75818 -16.31712 -15.68439 -15.35045 -15.14954 -14.97150 -14.52261 -14.26335 -14.02707 -13.98599 -13.73057 -13.24399 -13.06388 -12.92661 -12.43270 -12.33856 -12.09193 -12.03438 -11.99860 -11.45820 -11.38702 -11.00781 -10.97397 -10.49278 -10.39360 -10.21083 -10.03855 -9.78643 -9.62782 -9.49466 -9.27662 -8.67624 -7.85477 -7.63818 -7.31732 -4.87330 -0.68772 0.37321 0.99150 1.43206 2.13901 2.15979 2.48750 2.53762 2.82387 3.07837 3.45154 3.55242 3.56961 3.88753 4.29771 4.32277 4.46963 4.47931 4.50919 4.55328 4.70865 4.80871 5.17366 5.33243 5.40423 5.50254 5.57947 5.73348 5.82869 5.84914 6.29232 6.38235 6.41690 6.83459 6.95621 7.00487 7.19881 7.31734 7.38878 7.47549 7.61211 7.96188 8.02961 8.23943 8.53992 9.26497 9.91420 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.017385 B = 0.002664 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.192908 B =10509.948395 C =12042.503262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.328 6.328 4 C 0.554 3.446 5 O -0.487 6.487 6 C -0.025 4.025 7 N -0.415 5.415 8 C 0.116 3.884 9 C -0.274 4.274 10 C 0.597 3.403 11 O -0.487 6.487 12 N -0.644 5.644 13 C 0.381 3.619 14 C -0.310 4.310 15 C -0.035 4.035 16 C -0.270 4.270 17 C 0.272 3.728 18 C -0.472 4.472 19 H 0.085 0.915 20 C 0.043 3.957 21 N -0.801 5.801 22 Si 1.148 2.852 23 H -0.329 1.329 24 H -0.280 1.280 25 H -0.293 1.293 26 N -0.597 5.597 27 S 0.320 5.680 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.203 0.797 34 H 0.404 0.596 35 H 0.146 0.854 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.627 -9.410 -4.002 23.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.243 6.243 4 C 0.393 3.607 5 O -0.374 6.374 6 C -0.295 4.295 7 N -0.133 5.133 8 C -0.047 4.047 9 C -0.400 4.400 10 C 0.381 3.619 11 O -0.362 6.362 12 N -0.288 5.288 13 C 0.151 3.849 14 C -0.335 4.335 15 C -0.059 4.059 16 C -0.292 4.292 17 C 0.148 3.852 18 C -0.504 4.504 19 H 0.103 0.897 20 C -0.179 4.179 21 N -0.423 5.423 22 Si 0.983 3.017 23 H -0.262 1.262 24 H -0.208 1.208 25 H -0.221 1.221 26 N -0.322 5.322 27 S 0.577 5.423 28 H 0.101 0.899 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.220 0.780 34 H 0.239 0.761 35 H 0.163 0.837 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -20.229 -12.088 -3.630 23.844 hybrid contribution -0.037 2.924 -0.206 2.931 sum -20.267 -9.164 -3.836 22.571 Atomic orbital electron populations 1.21816 0.92042 1.03180 1.03939 1.23229 0.95826 0.79209 1.03123 1.86667 1.21755 1.32819 1.83063 1.19463 0.81718 0.86289 0.73216 1.90944 1.60599 1.40439 1.45425 1.25705 0.95922 0.95659 1.12169 1.66283 1.38366 0.96897 1.11767 1.22563 0.88075 0.97443 0.96571 1.27006 0.99606 0.97738 1.15631 1.16556 0.80901 0.86986 0.77472 1.90752 1.78989 1.18697 1.47736 1.43072 1.04763 1.10278 1.70701 1.17987 0.87312 0.85870 0.93711 1.21692 1.02830 0.91683 1.17301 1.20958 0.92790 0.97504 0.94646 1.21655 0.97078 0.97421 1.13087 1.18259 0.91342 0.87249 0.88337 1.20750 0.95600 0.95971 1.38084 0.89699 1.27766 0.99001 1.01945 0.89168 1.70642 1.05432 1.39108 1.27103 0.81951 0.72545 0.69751 0.77424 1.26199 1.20753 1.22089 1.65996 1.01890 1.36134 1.28218 1.84252 1.02960 0.96508 1.58607 0.89887 0.91205 0.91213 0.90673 0.90656 0.78022 0.76052 0.83715 0.87327 0.87477 0.90450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 10.29 37.16 0.38 -0.35 16 2 C 0.06 0.42 6.20 37.16 0.23 0.65 16 3 O -0.33 -3.39 10.20 -40.66 -0.41 -3.80 16 4 C 0.55 6.40 7.97 34.55 0.28 6.67 16 5 O -0.49 -6.20 16.64 -19.24 -0.32 -6.52 16 6 C -0.02 -0.29 7.24 -14.38 -0.10 -0.39 16 7 N -0.42 -4.95 10.47 -12.05 -0.13 -5.08 16 8 C 0.12 1.32 11.17 -18.56 -0.21 1.11 16 9 C -0.27 -3.45 6.55 -36.34 -0.24 -3.69 16 10 C 0.60 9.58 7.70 -12.66 -0.10 9.48 16 11 O -0.49 -8.80 13.54 5.25 0.07 -8.73 16 12 N -0.64 -11.62 5.40 -12.47 -0.07 -11.69 16 13 C 0.38 8.42 7.50 -155.07 -1.16 7.26 16 14 C -0.31 -6.64 8.89 -38.88 -0.35 -6.98 16 15 C -0.03 -0.73 10.15 -39.39 -0.40 -1.13 16 16 C -0.27 -6.19 9.83 -38.66 -0.38 -6.57 16 17 C 0.27 6.92 6.40 -85.00 -0.54 6.38 16 18 C -0.47 -12.51 9.57 -37.73 -0.36 -12.87 16 19 H 0.08 2.24 8.05 -52.49 -0.42 1.81 16 20 C 0.04 1.14 5.52 -17.34 -0.10 1.04 16 21 N -0.80 -21.32 13.65 55.55 0.76 -20.56 16 22 Si 1.15 26.99 25.61 -169.99 -4.35 22.64 16 23 H -0.33 -7.65 7.11 56.52 0.40 -7.25 16 24 H -0.28 -6.42 6.61 56.52 0.37 -6.05 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 N -0.60 -14.65 4.54 -10.27 -0.05 -14.70 16 27 S 0.32 3.54 22.07 -107.50 -2.37 1.17 16 28 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.20 1.92 8.06 -52.48 -0.42 1.50 16 34 H 0.40 6.51 8.03 -40.82 -0.33 6.18 16 35 H 0.15 2.97 5.17 -52.93 -0.27 2.70 16 36 H 0.11 1.91 8.06 -52.49 -0.42 1.48 16 37 H 0.11 2.28 8.06 -52.49 -0.42 1.86 16 38 H 0.28 7.22 8.72 -40.82 -0.36 6.87 16 LS Contribution 352.76 15.07 5.32 5.32 Total: -1.00 -30.57 352.76 -8.19 -38.76 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -3.59 Total: 2.58 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -3.05 Total: 0.61 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: 0.52 Total: -52.03 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.66 Total: -19.05 kcal Atomic # 14 Polarization: 26.99 SS G_CDS: -4.35 Total: 22.64 kcal Atomic # 16 Polarization: 3.54 SS G_CDS: -2.37 Total: 1.17 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.57 -8.19 -38.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361869389.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.525 kcal (2) G-P(sol) polarization free energy of solvation -30.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds