Wall clock time and date at job start Wed Apr 1 2020 04:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42093 * 110.54338 * 2 1 4 4 O 1.42099 * 110.54222 * 223.24642 * 2 1 3 5 5 C 1.76201 * 104.44909 * 111.62273 * 2 1 3 6 6 C 1.38777 * 119.99809 * 89.99949 * 5 2 1 7 7 C 1.38610 * 118.03476 * 179.97438 * 6 5 2 8 8 C 1.39408 * 117.90969 * 359.97438 * 7 6 5 9 9 N 1.39356 * 120.15521 * 180.02562 * 8 7 6 10 10 C 1.34777 * 120.00323 * 174.67299 * 9 8 7 11 11 O 1.21544 * 119.99899 * 5.04463 * 10 9 8 12 12 C 1.47843 * 119.99892 * 185.03975 * 10 9 8 13 13 C 1.39938 * 120.03025 * 359.72602 * 12 10 9 14 14 C 1.38325 * 120.35826 * 179.69165 * 13 12 10 15 15 C 1.37761 * 120.41355 * 0.61094 * 14 13 12 16 16 C 1.40753 * 120.03851 * 359.67049 * 15 14 13 17 17 C 1.41440 * 120.17259 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00118 * 330.48494 * 17 16 15 19 19 C 1.39935 * 119.99894 * 150.47946 * 17 16 15 20 20 N 1.30831 * 119.99720 * 350.03819 * 19 17 16 21 21 Si 1.86796 * 120.00255 * 170.03585 * 19 17 16 22 22 H 1.48504 * 109.47167 * 60.00013 * 21 19 17 23 23 H 1.48504 * 109.47347 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47045 * 300.00275 * 21 19 17 25 25 C 1.39015 * 120.02695 * 180.02562 * 12 10 9 26 26 N 1.32451 * 119.69776 * 0.02562 * 8 7 6 27 27 N 1.28344 * 122.08137 * 359.97438 * 26 8 7 28 28 H 1.09005 * 109.47031 * 308.37696 * 1 2 3 29 29 H 1.08997 * 109.47280 * 68.37449 * 1 2 3 30 30 H 1.09003 * 109.47185 * 188.38167 * 1 2 3 31 31 H 1.08000 * 120.98257 * 359.97438 * 6 5 2 32 32 H 1.08000 * 121.04565 * 180.02562 * 7 6 5 33 33 H 0.97003 * 119.99635 * 354.67690 * 9 8 7 34 34 H 1.08002 * 119.81858 * 0.02562 * 13 12 10 35 35 H 1.08001 * 119.79419 * 180.30018 * 14 13 12 36 36 H 1.07999 * 119.98048 * 179.68997 * 15 14 13 37 37 H 0.97009 * 119.99537 * 179.97438 * 20 19 17 38 38 H 1.07997 * 120.20446 * 359.97425 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9693 -0.9117 5 6 2.2537 -0.6288 1.5862 6 6 2.4268 -1.9936 1.7680 7 6 2.7730 -2.4438 3.0324 8 6 2.9262 -1.4960 4.0432 9 7 3.2741 -1.8967 5.3317 10 6 3.5264 -0.9727 6.2799 11 8 3.3619 0.2070 6.0378 12 6 4.0032 -1.3940 7.6144 13 6 4.1872 -2.7524 7.8956 14 6 4.6391 -3.1538 9.1398 15 6 4.9012 -2.2224 10.1204 16 6 4.7164 -0.8520 9.8579 17 6 4.9852 0.1068 10.8625 18 1 4.8654 -0.1539 11.9037 19 6 5.4065 1.3931 10.5072 20 7 5.7392 1.6537 9.2691 21 14 5.4938 2.7379 11.8007 22 1 6.4396 2.3337 12.8720 23 1 5.9653 3.9985 11.1732 24 1 4.1453 2.9506 12.3853 25 6 4.2632 -0.4414 8.5929 26 7 2.7397 -0.2127 3.7732 27 7 2.4192 0.1975 2.6001 28 1 -0.3633 0.6380 0.8057 29 1 -0.3634 0.3787 -0.9553 30 1 -0.3634 -1.0167 0.1498 31 1 2.2957 -2.6847 0.9484 32 1 2.9202 -3.4956 3.2282 33 1 3.3347 -2.8408 5.5462 34 1 3.9804 -3.4911 7.1353 35 1 4.7825 -4.2043 9.3454 36 1 5.2490 -2.5439 11.0910 37 1 6.0309 2.5455 9.0228 38 1 4.1184 0.6078 8.3819 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361870273.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:53 Heat of formation + Delta-G solvation = -4.843554 kcal Electronic energy + Delta-G solvation = -26513.065629 eV Core-core repulsion = 22449.262404 eV Total energy + Delta-G solvation = -4063.803225 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.43283 -39.46033 -37.40558 -37.28117 -36.23492 -35.31644 -33.82610 -33.46377 -31.66231 -30.08480 -29.84744 -29.59224 -25.65159 -25.35724 -24.92942 -22.62365 -21.12520 -20.27964 -19.67636 -18.45803 -18.22185 -17.86234 -17.26803 -16.63707 -16.01009 -15.82455 -15.60852 -15.24787 -14.81765 -14.71404 -14.38360 -14.22620 -13.96934 -13.63534 -13.58059 -13.34493 -12.87373 -12.72806 -12.64628 -12.37070 -12.23115 -11.88302 -11.60302 -11.39178 -11.21972 -11.18841 -11.03574 -10.85736 -10.65706 -10.60272 -10.24723 -9.96200 -9.85741 -9.35964 -9.20623 -9.01497 -7.83702 -7.63639 -6.84168 -4.55332 -0.34548 0.29684 0.53841 1.94579 2.39411 2.68831 2.71360 3.01712 3.04312 3.06524 3.09459 3.55523 3.60884 3.71671 3.86787 4.07991 4.24756 4.26306 4.38480 4.52799 4.54028 4.71924 4.99129 5.20269 5.25228 5.42454 5.47248 5.51240 5.85543 6.05259 6.27048 6.53592 6.76221 6.84804 7.09040 7.19077 7.24364 7.51371 7.63780 7.81902 8.01816 8.33737 8.36173 8.54982 8.67905 8.70784 10.09909 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.018056 B = 0.002379 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.371013 B =11766.249417 C =13036.751007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.646 4.646 2 S 2.522 3.478 3 O -0.912 6.912 4 O -0.933 6.933 5 C -0.544 4.544 6 C -0.017 4.017 7 C -0.174 4.174 8 C 0.354 3.646 9 N -0.649 5.649 10 C 0.550 3.450 11 O -0.461 6.461 12 C -0.132 4.132 13 C -0.219 4.219 14 C -0.096 4.096 15 C -0.204 4.204 16 C 0.099 3.901 17 C -0.458 4.458 18 H 0.082 0.918 19 C 0.070 3.930 20 N -0.790 5.790 21 Si 0.916 3.084 22 H -0.265 1.265 23 H -0.276 1.276 24 H -0.263 1.263 25 C -0.079 4.079 26 N -0.237 5.237 27 N -0.104 5.104 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.131 0.869 31 H 0.169 0.831 32 H 0.162 0.838 33 H 0.422 0.578 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.287 0.713 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.773 -9.130 -14.954 20.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.797 4.797 2 S 2.695 3.305 3 O -0.909 6.909 4 O -0.929 6.929 5 C -0.772 4.772 6 C -0.046 4.046 7 C -0.207 4.207 8 C 0.117 3.883 9 N -0.296 5.296 10 C 0.341 3.659 11 O -0.329 6.329 12 C -0.135 4.135 13 C -0.239 4.239 14 C -0.115 4.115 15 C -0.224 4.224 16 C 0.096 3.904 17 C -0.487 4.487 18 H 0.100 0.900 19 C -0.149 4.149 20 N -0.414 5.414 21 Si 0.740 3.260 22 H -0.190 1.190 23 H -0.201 1.201 24 H -0.187 1.187 25 C -0.099 4.099 26 N -0.092 5.092 27 N 0.048 4.952 28 H 0.156 0.844 29 H 0.155 0.845 30 H 0.150 0.850 31 H 0.187 0.813 32 H 0.179 0.821 33 H 0.262 0.738 34 H 0.107 0.893 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -9.145 -6.301 -15.133 18.771 hybrid contribution -0.153 -1.890 0.875 2.088 sum -9.298 -8.192 -14.258 18.890 Atomic orbital electron populations 1.30184 1.24904 1.12191 1.12401 1.05065 0.78099 0.74718 0.72652 1.93626 1.76940 1.35520 1.84790 1.93602 1.77872 1.62396 1.59057 1.34523 1.18397 1.01398 1.22900 1.21913 0.90367 0.94574 0.97727 1.21941 1.04609 1.01395 0.92775 1.20627 0.88283 0.92379 0.86999 1.44093 1.66322 1.12473 1.06730 1.19345 0.76676 0.85199 0.84721 1.90882 1.46166 1.16374 1.79514 1.19289 1.07741 0.94855 0.91626 1.20306 1.13008 0.92947 0.97633 1.20443 0.99870 0.97531 0.93624 1.21199 1.08740 0.93572 0.98878 1.17619 0.88680 0.91731 0.92357 1.19574 1.39612 0.95026 0.94497 0.89996 1.25978 0.92830 0.99740 0.96342 1.69719 1.30249 1.23184 1.18273 0.86228 0.79778 0.79237 0.80715 1.18950 1.20116 1.18735 1.21738 0.96473 0.99239 0.92413 1.73864 1.12931 1.11416 1.10979 1.73303 0.99161 1.29092 0.93665 0.84441 0.84519 0.84994 0.81338 0.82074 0.73847 0.89309 0.88590 0.88293 0.90184 0.84390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.78 10.80 101.05 1.09 -1.69 16 2 S 2.52 22.88 5.87 -107.50 -0.63 22.25 16 3 O -0.91 -12.42 17.75 -57.54 -1.02 -13.44 16 4 O -0.93 -9.77 17.17 -57.54 -0.99 -10.75 16 5 C -0.54 -6.52 6.61 -17.35 -0.11 -6.63 16 6 C -0.02 -0.16 9.60 -39.24 -0.38 -0.54 16 7 C -0.17 -1.77 10.07 -39.01 -0.39 -2.17 16 8 C 0.35 5.41 7.50 -154.53 -1.16 4.25 16 9 N -0.65 -10.07 5.34 -12.17 -0.06 -10.14 16 10 C 0.55 11.47 7.73 -12.33 -0.10 11.37 16 11 O -0.46 -11.38 14.63 5.33 0.08 -11.31 16 12 C -0.13 -2.90 5.87 -105.04 -0.62 -3.52 16 13 C -0.22 -4.16 9.55 -38.91 -0.37 -4.53 16 14 C -0.10 -1.89 10.01 -39.72 -0.40 -2.29 16 15 C -0.20 -4.55 9.78 -38.81 -0.38 -4.93 16 16 C 0.10 2.49 5.54 -106.87 -0.59 1.90 16 17 C -0.46 -11.59 9.06 -37.73 -0.34 -11.93 16 18 H 0.08 1.95 7.87 -52.49 -0.41 1.54 16 19 C 0.07 1.72 5.26 -17.34 -0.09 1.63 16 20 N -0.79 -20.57 10.85 55.55 0.60 -19.97 16 21 Si 0.92 18.49 29.57 -169.99 -5.03 13.46 16 22 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 23 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 24 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 25 C -0.08 -2.00 8.20 -38.44 -0.32 -2.31 16 26 N -0.24 -4.48 9.08 31.27 0.28 -4.20 16 27 N -0.10 -1.73 11.20 31.22 0.35 -1.38 16 28 H 0.14 0.58 8.14 -51.92 -0.42 0.16 16 29 H 0.14 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.13 0.28 8.14 -51.92 -0.42 -0.15 16 31 H 0.17 0.90 7.64 -52.49 -0.40 0.50 16 32 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.42 4.82 6.75 -40.82 -0.28 4.55 16 34 H 0.09 1.30 6.39 -52.49 -0.34 0.96 16 35 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.10 2.05 8.06 -52.49 -0.42 1.62 16 37 H 0.29 6.96 8.30 -40.82 -0.34 6.62 16 38 H 0.14 3.84 5.83 -52.49 -0.31 3.54 16 LS Contribution 349.71 15.07 5.27 5.27 Total: -1.00 -36.80 349.71 -8.70 -45.50 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -3.40 Total: 6.10 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: -4.15 Total: -21.39 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 1.17 Total: -35.68 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -1.93 Total: -35.51 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Atomic # 16 Polarization: 22.88 SS G_CDS: -0.63 Total: 22.25 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -36.80 -8.70 -45.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361870273.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.656 kcal (2) G-P(sol) polarization free energy of solvation -36.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds