Wall clock time and date at job start Wed Apr 1 2020 04:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42093 * 110.54338 * 2 1 4 4 O 1.42099 * 110.54222 * 223.24642 * 2 1 3 5 5 C 1.76201 * 104.44909 * 111.62273 * 2 1 3 6 6 C 1.38777 * 119.99809 * 89.99949 * 5 2 1 7 7 C 1.38610 * 118.03476 * 179.97438 * 6 5 2 8 8 C 1.39408 * 117.90969 * 359.97438 * 7 6 5 9 9 N 1.39356 * 120.15521 * 180.02562 * 8 7 6 10 10 C 1.34777 * 120.00323 * 174.67299 * 9 8 7 11 11 O 1.21544 * 119.99899 * 5.04463 * 10 9 8 12 12 C 1.47843 * 119.99892 * 185.03975 * 10 9 8 13 13 C 1.39938 * 120.03025 * 359.72602 * 12 10 9 14 14 C 1.38325 * 120.35826 * 179.69165 * 13 12 10 15 15 C 1.37761 * 120.41355 * 0.61094 * 14 13 12 16 16 C 1.40753 * 120.03851 * 359.67049 * 15 14 13 17 17 C 1.41440 * 120.17259 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00118 * 330.48494 * 17 16 15 19 19 C 1.39935 * 119.99894 * 150.47946 * 17 16 15 20 20 N 1.30831 * 119.99720 * 350.03819 * 19 17 16 21 21 Si 1.86796 * 120.00255 * 170.03585 * 19 17 16 22 22 H 1.48504 * 109.47167 * 60.00013 * 21 19 17 23 23 H 1.48504 * 109.47347 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47045 * 300.00275 * 21 19 17 25 25 C 1.39015 * 120.02695 * 180.02562 * 12 10 9 26 26 N 1.32451 * 119.69776 * 0.02562 * 8 7 6 27 27 N 1.28344 * 122.08137 * 359.97438 * 26 8 7 28 28 H 1.09005 * 109.47031 * 308.37696 * 1 2 3 29 29 H 1.08997 * 109.47280 * 68.37449 * 1 2 3 30 30 H 1.09003 * 109.47185 * 188.38167 * 1 2 3 31 31 H 1.08000 * 120.98257 * 359.97438 * 6 5 2 32 32 H 1.08000 * 121.04565 * 180.02562 * 7 6 5 33 33 H 0.97003 * 119.99635 * 354.67690 * 9 8 7 34 34 H 1.08002 * 119.81858 * 0.02562 * 13 12 10 35 35 H 1.08001 * 119.79419 * 180.30018 * 14 13 12 36 36 H 1.07999 * 119.98048 * 179.68997 * 15 14 13 37 37 H 0.97009 * 119.99537 * 179.97438 * 20 19 17 38 38 H 1.07997 * 120.20446 * 359.97425 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9693 -0.9117 5 6 2.2537 -0.6288 1.5862 6 6 2.4268 -1.9936 1.7680 7 6 2.7730 -2.4438 3.0324 8 6 2.9262 -1.4960 4.0432 9 7 3.2741 -1.8967 5.3317 10 6 3.5264 -0.9727 6.2799 11 8 3.3619 0.2070 6.0378 12 6 4.0032 -1.3940 7.6144 13 6 4.1872 -2.7524 7.8956 14 6 4.6391 -3.1538 9.1398 15 6 4.9012 -2.2224 10.1204 16 6 4.7164 -0.8520 9.8579 17 6 4.9852 0.1068 10.8625 18 1 4.8654 -0.1539 11.9037 19 6 5.4065 1.3931 10.5072 20 7 5.7392 1.6537 9.2691 21 14 5.4938 2.7379 11.8007 22 1 6.4396 2.3337 12.8720 23 1 5.9653 3.9985 11.1732 24 1 4.1453 2.9506 12.3853 25 6 4.2632 -0.4414 8.5929 26 7 2.7397 -0.2127 3.7732 27 7 2.4192 0.1975 2.6001 28 1 -0.3633 0.6380 0.8057 29 1 -0.3634 0.3787 -0.9553 30 1 -0.3634 -1.0167 0.1498 31 1 2.2957 -2.6847 0.9484 32 1 2.9202 -3.4956 3.2282 33 1 3.3347 -2.8408 5.5462 34 1 3.9804 -3.4911 7.1353 35 1 4.7825 -4.2043 9.3454 36 1 5.2490 -2.5439 11.0910 37 1 6.0309 2.5455 9.0228 38 1 4.1184 0.6078 8.3819 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361870273.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:52 Heat of formation + Delta-G solvation = -34.505947 kcal Electronic energy + Delta-G solvation = -26514.351887 eV Core-core repulsion = 22449.262404 eV Total energy + Delta-G solvation = -4065.089483 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.54090 -40.93137 -38.95513 -38.22099 -37.07347 -36.69539 -35.58923 -34.39982 -32.99606 -31.59400 -31.29810 -30.32020 -27.35886 -26.44928 -26.14284 -24.05275 -22.84445 -21.69258 -20.57596 -19.83416 -19.34314 -18.91444 -18.56101 -17.56843 -17.40911 -16.98419 -16.74366 -16.59668 -16.44962 -15.89399 -15.59214 -15.44288 -15.18655 -14.86832 -14.53286 -14.33902 -14.02120 -13.95687 -13.66057 -13.56987 -13.21389 -13.08547 -13.01615 -12.85664 -12.82794 -12.55440 -12.28286 -12.21956 -11.99862 -11.78171 -11.57060 -11.54387 -11.19968 -11.13481 -10.63689 -10.23949 -9.55356 -9.39674 -8.64052 -6.44472 -1.02742 -0.69493 -0.34831 0.29243 0.97281 1.34950 1.44961 1.46115 1.48093 1.69544 1.83538 2.17453 2.26596 2.73327 2.77022 2.92656 3.20526 3.30051 3.62511 3.64113 3.74502 3.84630 4.11022 4.18322 4.25178 4.36433 4.51297 4.54846 4.71655 4.85695 4.96044 5.03106 5.11007 5.14891 5.27682 5.45177 5.75503 5.83111 6.00181 6.11110 6.26598 6.55062 6.84852 6.89888 6.93321 7.43635 8.31240 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.018056 B = 0.002379 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.371013 B =11766.249417 C =13036.751007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.614 4.614 2 S 2.523 3.477 3 O -0.969 6.969 4 O -0.946 6.946 5 C -0.536 4.536 6 C -0.014 4.014 7 C -0.143 4.143 8 C 0.321 3.679 9 N -0.631 5.631 10 C 0.552 3.448 11 O -0.516 6.516 12 C -0.141 4.141 13 C -0.187 4.187 14 C -0.096 4.096 15 C -0.204 4.204 16 C 0.064 3.936 17 C -0.497 4.497 18 H 0.085 0.915 19 C 0.025 3.975 20 N -0.836 5.836 21 Si 0.984 3.016 22 H -0.252 1.252 23 H -0.276 1.276 24 H -0.260 1.260 25 C -0.120 4.120 26 N -0.303 5.303 27 N -0.157 5.157 28 H 0.141 0.859 29 H 0.168 0.832 30 H 0.168 0.832 31 H 0.221 0.779 32 H 0.218 0.782 33 H 0.442 0.558 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.112 0.888 37 H 0.284 0.716 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.468 -13.865 -16.984 24.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.770 4.770 2 S 2.699 3.301 3 O -0.966 6.966 4 O -0.943 6.943 5 C -0.763 4.763 6 C -0.042 4.042 7 C -0.175 4.175 8 C 0.084 3.916 9 N -0.281 5.281 10 C 0.342 3.658 11 O -0.388 6.388 12 C -0.145 4.145 13 C -0.206 4.206 14 C -0.114 4.114 15 C -0.224 4.224 16 C 0.062 3.938 17 C -0.527 4.527 18 H 0.104 0.896 19 C -0.189 4.189 20 N -0.463 5.463 21 Si 0.805 3.195 22 H -0.176 1.176 23 H -0.201 1.201 24 H -0.184 1.184 25 C -0.141 4.141 26 N -0.155 5.155 27 N -0.002 5.002 28 H 0.160 0.840 29 H 0.185 0.815 30 H 0.186 0.814 31 H 0.237 0.763 32 H 0.234 0.766 33 H 0.286 0.714 34 H 0.165 0.835 35 H 0.164 0.836 36 H 0.130 0.870 37 H 0.094 0.906 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.800 -11.085 -17.158 23.107 hybrid contribution 0.197 -0.726 1.159 1.382 sum -10.603 -11.811 -15.999 22.537 Atomic orbital electron populations 1.29981 1.17560 1.14999 1.14414 1.05110 0.80719 0.73066 0.71239 1.93564 1.79972 1.38060 1.85049 1.93573 1.80054 1.62100 1.58553 1.35218 1.15694 1.02854 1.22576 1.22608 0.88719 0.93969 0.98904 1.22537 1.01031 1.02851 0.91112 1.20883 0.90281 0.92784 0.87621 1.43498 1.66093 1.12278 1.06238 1.19205 0.76158 0.85180 0.85247 1.90862 1.48608 1.18856 1.80508 1.19565 1.07256 0.95938 0.91714 1.20945 1.08604 0.92320 0.98739 1.20986 0.98227 0.99453 0.92744 1.21534 1.07676 0.92819 1.00370 1.17956 0.89783 0.93484 0.92565 1.19842 1.41699 0.96308 0.94815 0.89644 1.26848 0.92038 1.01841 0.98140 1.69861 1.32725 1.23331 1.20382 0.85208 0.79942 0.76158 0.78178 1.17550 1.20108 1.18382 1.21501 0.99925 0.98360 0.94274 1.73649 1.14800 1.14336 1.12672 1.73214 1.01858 1.30871 0.94212 0.84024 0.81455 0.81384 0.76273 0.76556 0.71438 0.83478 0.83617 0.87001 0.90585 0.88458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.61 -2.69 10.80 113.37 1.22 -1.47 16 2 S 2.52 41.63 5.87 -56.49 -0.33 41.29 16 3 O -0.97 -27.24 17.75 -127.65 -2.27 -29.51 16 4 O -0.95 -17.30 17.17 -127.65 -2.19 -19.49 16 5 C -0.54 -12.09 6.61 84.82 0.56 -11.53 16 6 C -0.01 -0.21 9.60 22.49 0.22 0.01 16 7 C -0.14 -2.30 10.07 22.64 0.23 -2.07 16 8 C 0.32 9.47 7.50 132.99 1.00 10.47 16 9 N -0.63 -18.66 5.34 -310.71 -1.66 -20.32 16 10 C 0.55 23.75 7.73 86.79 0.67 24.42 16 11 O -0.52 -27.64 14.63 -3.85 -0.06 -27.70 16 12 C -0.14 -6.32 5.87 -20.14 -0.12 -6.44 16 13 C -0.19 -6.47 9.55 22.70 0.22 -6.25 16 14 C -0.10 -3.42 10.01 22.18 0.22 -3.20 16 15 C -0.20 -8.98 9.78 22.77 0.22 -8.76 16 16 C 0.06 3.40 5.54 -21.32 -0.12 3.28 16 17 C -0.50 -26.74 9.06 23.47 0.21 -26.52 16 18 H 0.09 4.30 7.87 -2.91 -0.02 4.28 16 19 C 0.02 1.30 5.26 85.25 0.45 1.75 16 20 N -0.84 -47.62 10.85 21.82 0.24 -47.39 16 21 Si 0.98 40.28 29.57 68.60 2.03 42.31 16 22 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 23 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 24 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 25 C -0.12 -6.53 8.20 23.01 0.19 -6.34 16 26 N -0.30 -11.93 9.08 -54.97 -0.50 -12.43 16 27 N -0.16 -5.41 11.20 -55.15 -0.62 -6.03 16 28 H 0.14 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.17 -0.09 8.14 -2.39 -0.02 -0.11 16 30 H 0.17 -0.34 8.14 -2.39 -0.02 -0.36 16 31 H 0.22 0.92 7.64 -2.91 -0.02 0.89 16 32 H 0.22 0.92 8.06 -2.91 -0.02 0.90 16 33 H 0.44 8.28 6.75 -92.71 -0.63 7.66 16 34 H 0.15 3.34 6.39 -2.91 -0.02 3.33 16 35 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 36 H 0.11 4.52 8.06 -2.91 -0.02 4.49 16 37 H 0.28 15.17 8.30 -92.70 -0.77 14.40 16 38 H 0.10 6.04 5.83 -2.91 -0.02 6.02 16 Total: -1.00 -95.17 349.71 0.33 -94.84 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.52 Total: 17.07 kcal Atomic # 6 Polarization: -37.82 SS G_CDS: 5.17 Total: -32.65 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -2.54 Total: -86.16 kcal Atomic # 8 Polarization: -72.19 SS G_CDS: -4.51 Total: -76.70 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.31 kcal Atomic # 16 Polarization: 41.63 SS G_CDS: -0.33 Total: 41.29 kcal Total: -95.17 0.33 -94.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361870273.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.329 kcal (2) G-P(sol) polarization free energy of solvation -95.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds