Wall clock time and date at job start Wed Apr 1 2020 04:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86799 * 120.00334 * 2 1 4 4 H 1.48501 * 109.47263 * 240.00637 * 3 2 1 5 5 H 1.48506 * 109.46876 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47284 * 120.00604 * 3 2 1 7 7 C 1.40033 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00340 * 170.14729 * 7 2 1 9 9 C 1.41549 * 119.99656 * 350.14357 * 7 2 1 10 10 C 1.41164 * 120.99535 * 151.70833 * 9 7 2 11 11 C 1.36585 * 119.13082 * 180.02562 * 10 9 7 12 12 N 1.32075 * 121.25709 * 359.72131 * 11 10 9 13 13 C 1.32488 * 122.22706 * 0.57546 * 12 11 10 14 14 N 1.39454 * 119.65001 * 179.70484 * 13 12 11 15 15 C 1.34780 * 120.00251 * 5.08623 * 14 13 12 16 16 O 1.21583 * 119.99208 * 354.97900 * 15 14 13 17 17 N 1.34770 * 120.00306 * 174.98223 * 15 14 13 18 18 C 1.46507 * 119.99815 * 180.27493 * 17 15 14 19 19 C 1.50698 * 109.47223 * 179.72091 * 18 17 15 20 20 N 1.28647 * 124.71598 * 89.99776 * 19 18 17 21 21 C 1.33566 * 115.76435 * 180.02562 * 20 19 18 22 22 C 1.47265 * 123.14098 * 180.02562 * 21 20 19 23 23 N 1.34775 * 120.00309 * 359.97438 * 22 21 20 24 24 O 1.21634 * 119.99725 * 179.97438 * 22 21 20 25 25 C 1.35207 * 113.71653 * 0.02562 * 21 20 19 26 26 S 1.70766 * 124.72141 * 269.70524 * 19 18 17 27 27 C 1.38645 * 120.70468 * 359.42865 * 13 12 11 28 28 H 0.97005 * 119.99868 * 359.97438 * 1 2 3 29 29 H 1.08007 * 120.43397 * 0.02562 * 10 9 7 30 30 H 1.07999 * 119.37537 * 180.02562 * 11 10 9 31 31 H 0.97005 * 120.00549 * 185.09323 * 14 13 12 32 32 H 0.96998 * 120.00111 * 0.02562 * 17 15 14 33 33 H 1.08995 * 109.47039 * 299.72497 * 18 17 15 34 34 H 1.08997 * 109.46835 * 59.72314 * 18 17 15 35 35 H 0.97005 * 119.99439 * 359.97438 * 23 22 21 36 36 H 0.96998 * 120.00537 * 179.97438 * 23 22 21 37 37 H 1.07992 * 125.58558 * 180.02562 * 25 21 20 38 38 H 1.08005 * 120.66722 * 180.29899 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0951 1.6964 -1.2126 5 1 1.2765 2.7465 0.0006 6 1 3.0953 1.6963 1.2124 7 6 2.0076 -1.2127 -0.0005 8 1 3.0756 -1.2196 -0.1606 9 6 1.3154 -2.4296 0.2088 10 6 1.7908 -3.6401 -0.3403 11 6 1.0925 -4.7920 -0.1147 12 7 -0.0119 -4.7932 0.6096 13 6 -0.5074 -3.6870 1.1443 14 7 -1.6811 -3.7492 1.8949 15 6 -2.2493 -4.9424 2.1595 16 8 -1.7913 -5.9560 1.6686 17 7 -3.3252 -5.0118 2.9682 18 6 -3.9392 -6.3095 3.2606 19 6 -5.1114 -6.1133 4.1871 20 7 -6.3212 -5.9030 3.8035 21 6 -7.2217 -5.7533 4.7785 22 6 -8.6510 -5.5065 4.5235 23 7 -9.1048 -5.4217 3.2573 24 8 -9.4219 -5.3793 5.4557 25 6 -6.6984 -5.8494 6.0215 26 16 -5.0199 -6.1461 5.8920 27 6 0.1316 -2.4689 0.9704 28 1 -0.4850 0.8401 0.0004 29 1 2.6950 -3.6551 -0.9309 30 1 1.4529 -5.7204 -0.5325 31 1 -2.0887 -2.9338 2.2265 32 1 -3.6909 -4.2031 3.3595 33 1 -4.2821 -6.7666 2.3325 34 1 -3.2050 -6.9598 3.7363 35 1 -8.4899 -5.5228 2.5139 36 1 -10.0463 -5.2595 3.0893 37 1 -7.2513 -5.7595 6.9448 38 1 -0.2702 -1.5682 1.4106 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364162799.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:12 Heat of formation + Delta-G solvation = 21.600433 kcal Electronic energy + Delta-G solvation = -25833.736710 eV Core-core repulsion = 21803.372934 eV Total energy + Delta-G solvation = -4030.363776 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.88563 -39.87733 -38.88463 -38.06142 -35.02719 -34.21365 -33.98776 -33.75870 -31.34423 -30.50999 -28.88153 -27.43278 -26.01078 -25.60643 -22.37504 -21.94129 -21.53472 -20.25587 -20.17702 -19.16346 -18.14420 -17.84642 -17.70833 -16.44275 -16.28419 -15.76608 -15.48265 -15.34053 -15.10241 -14.83232 -14.35768 -14.22739 -14.20764 -13.96882 -13.64900 -13.25158 -12.96453 -12.84524 -12.59598 -12.36419 -12.22069 -11.44538 -11.22731 -10.93076 -10.71798 -10.35617 -10.31747 -10.18351 -10.17538 -10.09341 -9.81888 -9.72053 -9.40218 -9.39816 -9.02039 -7.96695 -7.75932 -7.06373 -6.77454 -4.64020 -0.00091 0.73491 1.15597 1.41891 2.66475 2.79858 2.83150 3.00081 3.02876 3.03408 3.13803 3.22524 3.57248 3.77208 3.84757 4.32596 4.49150 4.69731 4.73005 4.78779 5.09996 5.39675 5.47726 5.65875 5.90343 6.33776 6.40445 6.50443 6.57381 6.77048 6.78362 6.92725 7.08037 7.09788 7.18531 7.38590 7.45477 7.82434 7.84233 8.06554 8.29716 8.43193 8.70183 8.74478 9.06603 9.68322 10.09354 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.015302 B = 0.002081 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.401104 B =13454.165105 C =14379.053794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.076 3.924 3 Si 0.914 3.086 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.457 4.457 8 H 0.081 0.919 9 C 0.145 3.855 10 C -0.280 4.280 11 C 0.118 3.882 12 N -0.551 5.551 13 C 0.353 3.647 14 N -0.665 5.665 15 C 0.696 3.304 16 O -0.529 6.529 17 N -0.751 5.751 18 C 0.223 3.777 19 C 0.006 3.994 20 N -0.426 5.426 21 C -0.001 4.001 22 C 0.603 3.397 23 N -0.836 5.836 24 O -0.541 6.541 25 C -0.224 4.224 26 S 0.253 5.747 27 C -0.240 4.240 28 H 0.281 0.719 29 H 0.102 0.898 30 H 0.123 0.877 31 H 0.405 0.595 32 H 0.394 0.606 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.413 0.587 36 H 0.406 0.594 37 H 0.192 0.808 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.030 -6.663 10.589 18.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.142 4.142 3 Si 0.739 3.261 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.488 4.488 8 H 0.099 0.901 9 C 0.136 3.864 10 C -0.304 4.304 11 C -0.035 4.035 12 N -0.270 5.270 13 C 0.127 3.873 14 N -0.313 5.313 15 C 0.395 3.605 16 O -0.400 6.400 17 N -0.411 5.411 18 C 0.095 3.905 19 C -0.274 4.274 20 N -0.143 5.143 21 C -0.137 4.137 22 C 0.385 3.615 23 N -0.398 5.398 24 O -0.418 6.418 25 C -0.367 4.367 26 S 0.511 5.489 27 C -0.265 4.265 28 H 0.092 0.908 29 H 0.120 0.880 30 H 0.140 0.860 31 H 0.240 0.760 32 H 0.227 0.773 33 H 0.116 0.884 34 H 0.109 0.891 35 H 0.243 0.757 36 H 0.237 0.763 37 H 0.209 0.791 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.934 -8.395 11.106 19.003 hybrid contribution -0.819 2.682 -0.486 2.847 sum -13.753 -5.713 10.620 18.291 Atomic orbital electron populations 1.69739 1.07537 1.29292 1.35677 1.25930 0.94875 1.01366 0.92034 0.86269 0.79987 0.79857 0.80031 1.18915 1.20310 1.18806 1.19530 0.95819 0.89989 1.43471 0.90083 1.17575 0.90172 0.92270 0.86368 1.21711 1.04579 0.94708 1.09396 1.21487 0.90781 0.96568 0.94687 1.67198 1.15344 1.28242 1.16210 1.17946 0.85901 0.90934 0.92526 1.42512 1.26003 1.07451 1.55306 1.15966 0.79851 0.84794 0.79876 1.91035 1.62861 1.33219 1.52838 1.45113 1.33212 1.08818 1.54003 1.19461 0.87933 0.86120 0.97001 1.27120 0.96478 1.06130 0.97673 1.66931 1.00042 1.12716 1.34564 1.20337 0.95514 1.09409 0.88406 1.17028 0.85270 0.75797 0.83423 1.43627 1.13931 1.74477 1.07812 1.90868 1.56451 1.50986 1.43452 1.26784 1.00523 1.05837 1.03524 1.83172 1.01695 1.60194 1.03865 1.21551 1.01537 0.95295 1.08154 0.90786 0.87972 0.85952 0.76039 0.77321 0.88356 0.89063 0.75728 0.76268 0.79120 0.85331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.31 10.83 55.55 0.60 -18.71 16 2 C 0.08 1.80 5.30 -17.34 -0.09 1.71 16 3 Si 0.91 17.71 29.57 -169.99 -5.03 12.69 16 4 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 6 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 7 C -0.46 -11.52 9.13 -37.65 -0.34 -11.87 16 8 H 0.08 1.95 7.87 -52.49 -0.41 1.54 16 9 C 0.14 3.73 5.58 -106.55 -0.59 3.13 16 10 C -0.28 -6.74 9.85 -39.07 -0.38 -7.12 16 11 C 0.12 2.79 11.10 -18.04 -0.20 2.59 16 12 N -0.55 -13.77 7.86 -12.76 -0.10 -13.87 16 13 C 0.35 8.33 7.42 -154.68 -1.15 7.18 16 14 N -0.67 -12.48 5.40 -15.86 -0.09 -12.57 16 15 C 0.70 12.47 8.52 -86.92 -0.74 11.73 16 16 O -0.53 -11.73 14.60 5.29 0.08 -11.65 16 17 N -0.75 -9.28 5.55 -66.41 -0.37 -9.65 16 18 C 0.22 2.35 6.24 -5.19 -0.03 2.31 16 19 C 0.01 0.05 6.71 -13.61 -0.09 -0.04 16 20 N -0.43 -4.23 10.12 -8.51 -0.09 -4.32 16 21 C 0.00 -0.01 6.70 -84.52 -0.57 -0.57 16 22 C 0.60 6.35 8.07 -12.59 -0.10 6.24 16 23 N -0.84 -6.17 8.87 30.40 0.27 -5.90 16 24 O -0.54 -7.23 17.55 5.25 0.09 -7.14 16 25 C -0.22 -1.83 10.62 29.65 0.31 -1.52 16 26 S 0.25 1.73 22.92 -107.50 -2.46 -0.73 16 27 C -0.24 -5.92 8.60 -38.46 -0.33 -6.25 16 28 H 0.28 6.21 8.29 -40.82 -0.34 5.88 16 29 H 0.10 2.25 8.06 -52.48 -0.42 1.83 16 30 H 0.12 2.52 8.06 -52.49 -0.42 2.09 16 31 H 0.41 6.20 8.72 -40.82 -0.36 5.85 16 32 H 0.39 3.94 8.48 -40.82 -0.35 3.59 16 33 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.41 2.68 8.35 -40.82 -0.34 2.34 16 36 H 0.41 2.24 8.93 -40.82 -0.36 1.88 16 37 H 0.19 1.32 8.03 -52.49 -0.42 0.90 16 38 H 0.13 3.15 6.27 -52.48 -0.33 2.82 16 LS Contribution 355.76 15.07 5.36 5.36 Total: -1.00 -33.83 355.76 -9.44 -43.26 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -3.40 Total: 15.70 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: -4.31 Total: 7.53 kcal Atomic # 7 Polarization: -65.25 SS G_CDS: 0.23 Total: -65.02 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: 0.17 Total: -18.79 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.03 Total: 12.69 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -2.46 Total: -0.73 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.83 -9.44 -43.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364162799.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.864 kcal (2) G-P(sol) polarization free energy of solvation -33.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds