Wall clock time and date at job start Wed Apr 1 2020 04:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35500 * 117.00051 * 2 1 4 4 N 1.32202 * 119.71627 * 359.72002 * 3 2 1 5 5 C 1.31856 * 121.88469 * 179.75079 * 4 3 2 6 6 C 1.38985 * 121.08241 * 0.53184 * 5 4 3 7 7 N 1.40013 * 120.34929 * 179.71935 * 6 5 4 8 8 C 1.34769 * 120.00009 * 210.62310 * 7 6 5 9 9 O 1.21783 * 120.00677 * 5.22794 * 8 7 6 10 10 C 1.46185 * 119.99678 * 185.23234 * 8 7 6 11 11 S 1.75664 * 125.23341 * 0.02562 * 10 8 7 12 12 C 1.75466 * 92.09467 * 179.97438 * 11 10 8 13 13 C 1.32750 * 111.37276 * 359.97438 * 12 11 10 14 14 C 1.39584 * 125.22765 * 179.71411 * 10 8 7 15 15 C 1.40512 * 123.72221 * 0.02617 * 14 10 8 16 16 H 1.08003 * 119.99750 * 19.19205 * 15 14 10 17 17 C 1.40307 * 120.00203 * 199.18623 * 15 14 10 18 18 N 1.30650 * 119.99829 * 10.10044 * 17 15 14 19 19 Si 1.86792 * 120.00091 * 190.09372 * 17 15 14 20 20 H 1.48496 * 109.47046 * 60.00691 * 19 17 15 21 21 H 1.48508 * 109.47090 * 180.02562 * 19 17 15 22 22 H 1.48490 * 109.47393 * 300.00382 * 19 17 15 23 23 C 1.38958 * 119.30431 * 359.74121 * 6 5 4 24 24 C 1.39942 * 118.28587 * 0.02562 * 23 6 5 25 25 C 1.47534 * 120.55879 * 180.02562 * 24 23 6 26 26 N 1.34775 * 120.00368 * 359.97345 * 25 24 23 27 27 O 1.21592 * 119.99748 * 179.97438 * 25 24 23 28 28 H 1.09002 * 109.46783 * 60.00729 * 1 2 3 29 29 H 1.09005 * 109.46676 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47078 * 300.00276 * 1 2 3 31 31 H 1.08001 * 119.45516 * 180.25596 * 5 4 3 32 32 H 0.97003 * 119.99405 * 30.61766 * 7 6 5 33 33 H 1.08003 * 124.31295 * 179.97438 * 12 11 10 34 34 H 1.08003 * 122.78145 * 180.02562 * 13 12 11 35 35 H 0.96999 * 119.99724 * 179.97438 * 18 17 15 36 36 H 1.08004 * 120.85217 * 179.97438 * 23 6 5 37 37 H 0.97008 * 119.99755 * 0.02562 * 26 25 24 38 38 H 0.96996 * 120.00552 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2073 0.0000 4 7 1.3187 2.3125 -0.0056 5 6 1.8724 3.5091 -0.0010 6 6 3.2540 3.6605 -0.0010 7 7 3.8256 4.9386 -0.0019 8 6 5.0176 5.1432 -0.5965 9 8 5.5528 4.2406 -1.2146 10 6 5.6683 6.4486 -0.4994 11 16 5.0230 7.8416 0.3543 12 6 6.4103 8.8272 -0.0732 13 6 7.2832 8.1432 -0.8029 14 6 6.9008 6.7780 -1.0658 15 6 7.6813 5.8794 -1.8125 16 1 7.2286 4.9965 -2.2392 17 6 9.0486 6.1290 -2.0041 18 7 9.6392 7.0811 -1.3319 19 14 10.0246 5.1002 -3.2198 20 1 9.4394 5.2494 -4.5764 21 1 11.4366 5.5601 -3.2361 22 1 9.9741 3.6729 -2.8131 23 6 4.0620 2.5300 -0.0004 24 6 3.4451 1.2739 -0.0005 25 6 4.2547 0.0406 0.0006 26 7 5.6002 0.1177 0.0012 27 8 3.7080 -1.0455 0.0010 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.2419 4.3860 -0.0017 32 1 3.3636 5.6768 0.4253 33 1 6.5377 9.8589 0.2199 34 1 8.2052 8.5726 -1.1662 35 1 10.5846 7.2534 -1.4641 36 1 5.1384 2.6186 -0.0008 37 1 6.0364 0.9842 0.0012 38 1 6.1326 -0.6932 0.0015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411999818.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:03 Heat of formation + Delta-G solvation = -68.738373 kcal Electronic energy + Delta-G solvation = -27174.501901 eV Core-core repulsion = 23107.927989 eV Total energy + Delta-G solvation = -4066.573912 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.18773 -40.58320 -39.92157 -38.82479 -37.82678 -35.55372 -35.00408 -34.92797 -33.14015 -31.34891 -30.44974 -28.41202 -27.68616 -25.93973 -24.70268 -23.69817 -22.31133 -21.58131 -20.67628 -19.94397 -19.53400 -18.92158 -18.25860 -17.67840 -17.32321 -17.20940 -17.11465 -16.79772 -16.11038 -15.91966 -15.65922 -15.47386 -15.41302 -15.06666 -14.41039 -14.33210 -14.26051 -14.11575 -13.90605 -13.66930 -13.20689 -13.00413 -12.77607 -12.72139 -12.39164 -12.08046 -12.03323 -11.66050 -11.49918 -11.41159 -11.07004 -10.92224 -10.80566 -10.68140 -10.26330 -9.43898 -9.01524 -8.92230 -8.83908 -6.47535 -0.49640 0.02469 0.36323 1.35850 1.37767 1.39381 1.47929 1.71491 1.79286 1.97857 1.99419 2.15584 2.28424 2.41772 2.44965 2.75610 3.22415 3.32437 3.60515 3.75705 3.85354 4.25351 4.38262 4.38843 4.45517 4.46521 4.68707 4.77337 4.89391 4.96958 5.01864 5.31395 5.38838 5.58126 5.66212 5.80407 5.82697 6.15626 6.26697 6.37758 6.50658 6.60132 6.65296 6.83326 7.21270 7.56308 8.01705 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.012202 B = 0.003446 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.246399 B = 8123.835592 C =10068.667523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.296 6.296 3 C 0.334 3.666 4 N -0.521 5.521 5 C 0.149 3.851 6 C 0.067 3.933 7 N -0.665 5.665 8 C 0.592 3.408 9 O -0.578 6.578 10 C -0.469 4.469 11 S 0.006 5.994 12 C -0.189 4.189 13 C -0.135 4.135 14 C 0.114 3.886 15 C -0.403 4.403 16 H 0.095 0.905 17 C 0.038 3.962 18 N -0.784 5.784 19 Si 0.987 3.013 20 H -0.260 1.260 21 H -0.255 1.255 22 H -0.263 1.263 23 C -0.022 4.022 24 C -0.209 4.209 25 C 0.571 3.429 26 N -0.833 5.833 27 O -0.561 6.561 28 H 0.061 0.939 29 H 0.117 0.883 30 H 0.065 0.935 31 H 0.203 0.797 32 H 0.416 0.584 33 H 0.174 0.826 34 H 0.146 0.854 35 H 0.302 0.698 36 H 0.153 0.847 37 H 0.410 0.590 38 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.502 -2.292 3.088 8.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.201 6.201 3 C 0.153 3.847 4 N -0.244 5.244 5 C -0.011 4.011 6 C -0.031 4.031 7 N -0.311 5.311 8 C 0.391 3.609 9 O -0.463 6.463 10 C -0.587 4.587 11 S 0.261 5.739 12 C -0.323 4.323 13 C -0.167 4.167 14 C 0.103 3.897 15 C -0.433 4.433 16 H 0.113 0.887 17 C -0.184 4.184 18 N -0.407 5.407 19 Si 0.807 3.193 20 H -0.185 1.185 21 H -0.179 1.179 22 H -0.187 1.187 23 C -0.050 4.050 24 C -0.216 4.216 25 C 0.357 3.643 26 N -0.398 5.398 27 O -0.441 6.441 28 H 0.080 0.920 29 H 0.135 0.865 30 H 0.084 0.916 31 H 0.220 0.780 32 H 0.254 0.746 33 H 0.191 0.809 34 H 0.163 0.837 35 H 0.114 0.886 36 H 0.170 0.830 37 H 0.241 0.759 38 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -9.470 -3.437 3.550 10.681 hybrid contribution 2.791 0.274 -1.009 2.981 sum -6.679 -3.163 2.541 7.814 Atomic orbital electron populations 1.23169 0.75918 1.04653 1.02717 1.86484 1.24141 1.23097 1.86374 1.19880 0.88187 0.85560 0.91023 1.67481 1.39007 0.97978 1.19958 1.22928 0.90505 0.95064 0.92617 1.18662 0.93529 0.86058 1.04849 1.43148 1.21616 1.08370 1.57974 1.17008 0.79526 0.86941 0.77382 1.90611 1.65193 1.45358 1.45165 1.22751 1.08180 0.98021 1.29759 1.82366 1.25096 1.05068 1.61384 1.25461 0.98340 1.03491 1.05000 1.21801 1.00292 0.93793 1.00821 1.18340 0.90368 0.92099 0.88928 1.20197 0.93328 1.06700 1.23111 0.88667 1.27073 0.99003 0.95893 0.96443 1.69627 1.13881 1.25141 1.32091 0.85145 0.77124 0.78859 0.78190 1.18478 1.17853 1.18728 1.21769 1.01632 0.89418 0.92227 1.19864 0.91820 0.94263 1.15667 1.17838 0.83133 0.87821 0.75536 1.43620 1.05932 1.13739 1.76530 1.90809 1.72482 1.29526 1.51302 0.92018 0.86452 0.91636 0.78025 0.74605 0.80915 0.83655 0.88580 0.82994 0.75904 0.75265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.38 113.37 1.18 1.82 16 2 O -0.30 -9.34 8.56 -67.15 -0.58 -9.92 16 3 C 0.33 10.74 7.51 85.13 0.64 11.38 16 4 N -0.52 -14.71 9.19 -307.48 -2.83 -17.53 16 5 C 0.15 3.83 11.10 84.87 0.94 4.77 16 6 C 0.07 2.09 6.35 38.19 0.24 2.33 16 7 N -0.67 -22.17 5.35 -307.20 -1.64 -23.81 16 8 C 0.59 25.52 7.54 86.31 0.65 26.17 16 9 O -0.58 -27.68 11.93 -4.61 -0.06 -27.74 16 10 C -0.47 -21.21 6.50 24.66 0.16 -21.05 16 11 S 0.01 0.21 22.26 -56.49 -1.26 -1.05 16 12 C -0.19 -7.15 11.06 66.64 0.74 -6.41 16 13 C -0.13 -6.00 9.08 22.61 0.21 -5.79 16 14 C 0.11 5.60 5.72 -20.89 -0.12 5.49 16 15 C -0.40 -20.29 8.62 23.33 0.20 -20.09 16 16 H 0.10 5.06 5.87 -2.91 -0.02 5.04 16 17 C 0.04 1.68 5.40 85.37 0.46 2.14 16 18 N -0.78 -34.61 10.60 21.89 0.23 -34.37 16 19 Si 0.99 34.73 29.57 68.60 2.03 36.76 16 20 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 21 H -0.25 -8.07 7.11 99.48 0.71 -7.36 16 22 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 23 C -0.02 -0.73 8.24 22.86 0.19 -0.54 16 24 C -0.21 -6.93 5.90 -19.92 -0.12 -7.05 16 25 C 0.57 18.94 8.04 86.70 0.70 19.64 16 26 N -0.83 -21.51 8.83 -175.81 -1.55 -23.07 16 27 O -0.56 -21.70 16.02 16.86 0.27 -21.43 16 28 H 0.06 1.26 8.10 -2.39 -0.02 1.24 16 29 H 0.12 1.92 8.14 -2.38 -0.02 1.90 16 30 H 0.06 1.29 8.11 -2.39 -0.02 1.27 16 31 H 0.20 3.55 8.06 -2.91 -0.02 3.53 16 32 H 0.42 11.71 7.90 -92.71 -0.73 10.98 16 33 H 0.17 5.21 8.06 -2.91 -0.02 5.19 16 34 H 0.15 6.54 6.12 -2.91 -0.02 6.52 16 35 H 0.30 11.77 8.29 -92.71 -0.77 11.00 16 36 H 0.15 5.34 4.75 -2.91 -0.01 5.33 16 37 H 0.41 10.12 6.93 -92.70 -0.64 9.48 16 38 H 0.41 8.77 8.93 -92.71 -0.83 7.94 16 Total: -1.00 -64.18 344.33 -0.32 -64.50 By element: Atomic # 1 Polarization: 45.88 SS G_CDS: -1.00 Total: 44.87 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: 6.06 Total: 12.80 kcal Atomic # 7 Polarization: -92.99 SS G_CDS: -5.79 Total: -98.78 kcal Atomic # 8 Polarization: -58.73 SS G_CDS: -0.36 Total: -59.09 kcal Atomic # 14 Polarization: 34.73 SS G_CDS: 2.03 Total: 36.76 kcal Atomic # 16 Polarization: 0.21 SS G_CDS: -1.26 Total: -1.05 kcal Total: -64.18 -0.32 -64.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411999818.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.243 kcal (2) G-P(sol) polarization free energy of solvation -64.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds