Wall clock time and date at job start Wed Apr 1 2020 04:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47132 * 2 1 4 4 C 1.50702 * 109.46839 * 240.00016 * 2 1 3 5 5 H 1.07995 * 120.00351 * 239.99722 * 4 2 1 6 6 C 1.37880 * 119.99839 * 60.00013 * 4 2 1 7 7 N 1.31514 * 120.00019 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99737 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47529 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46988 * 120.00123 * 8 6 4 11 11 H 1.48500 * 109.47507 * 239.99831 * 8 6 4 12 12 C 1.52996 * 109.47047 * 120.00086 * 2 1 3 13 13 N 1.46492 * 109.47412 * 299.99709 * 12 2 1 14 14 C 1.34775 * 120.00235 * 180.02562 * 13 12 2 15 15 O 1.21599 * 120.00120 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00215 * 180.02562 * 14 13 12 17 17 C 1.40817 * 120.00089 * 185.39006 * 16 14 13 18 18 C 1.33779 * 122.61437 * 205.16196 * 17 16 14 19 19 S 1.75874 * 109.59769 * 179.77918 * 18 17 16 20 20 C 1.75862 * 91.04235 * 0.31255 * 19 18 17 21 21 S 1.76198 * 125.14751 * 179.97438 * 20 19 18 22 22 N 1.65599 * 107.21927 * 269.70053 * 21 20 19 23 23 O 1.42099 * 106.40164 * 23.23871 * 21 20 19 24 24 O 1.42098 * 106.39936 * 156.15783 * 21 20 19 25 25 C 1.33379 * 109.70076 * 359.69080 * 20 19 18 26 26 H 1.09007 * 109.46965 * 300.00089 * 1 2 3 27 27 H 1.09000 * 109.47433 * 59.99357 * 1 2 3 28 28 H 1.09000 * 109.47241 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46842 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47034 * 300.00008 * 3 2 1 31 31 H 1.08993 * 109.47131 * 60.00120 * 3 2 1 32 32 H 0.97004 * 119.99701 * 180.02562 * 7 6 4 33 33 H 1.09004 * 109.46962 * 179.97438 * 12 2 1 34 34 H 1.08998 * 109.47076 * 60.00290 * 12 2 1 35 35 H 0.97001 * 120.00019 * 359.97438 * 13 12 2 36 36 H 0.97003 * 119.99724 * 5.38396 * 16 14 13 37 37 H 1.07998 * 125.20425 * 0.04088 * 18 17 16 38 38 H 0.96994 * 119.99811 * 180.02562 * 22 21 20 39 39 H 0.96997 * 119.99706 * 359.97438 * 22 21 20 40 40 H 1.07998 * 122.55653 * 180.26335 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 3.1472 -2.2863 -3.6039 10 1 1.1675 -1.5865 -4.8165 11 1 3.1470 -0.1858 -4.8162 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8778 -0.4909 3.6694 15 8 2.5768 -1.4796 3.7810 16 7 1.4282 0.1441 4.7699 17 6 1.8597 -0.2669 6.0457 18 6 1.1394 -0.0562 7.1531 19 16 1.9926 -0.7101 8.5452 20 6 3.3212 -1.2402 7.5222 21 16 4.7671 -2.0731 8.0881 22 7 5.8914 -0.9125 8.4502 23 8 4.4181 -2.6915 9.3189 24 8 5.2775 -2.7926 6.9740 25 6 3.0658 -0.9216 6.2525 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 0.7088 1.1615 -3.4844 33 1 3.1300 -0.7216 1.2490 34 1 1.6767 -1.7489 1.2491 35 1 0.9944 0.7582 2.3564 36 1 0.8073 0.8844 4.6831 37 1 0.1786 0.4360 7.1867 38 1 6.7657 -1.1708 8.7814 39 1 5.6759 0.0256 8.3304 40 1 3.7456 -1.1558 5.4466 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413618407.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:53 Heat of formation + Delta-G solvation = -66.221678 kcal Electronic energy + Delta-G solvation = -25728.759761 eV Core-core repulsion = 21797.738932 eV Total energy + Delta-G solvation = -3931.020829 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.081 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.53811 -38.17124 -37.28000 -36.37117 -36.03311 -34.08859 -33.49106 -33.22432 -30.91427 -29.63999 -25.80234 -25.75948 -25.10141 -24.33217 -21.78017 -20.13736 -19.64682 -18.99053 -18.80317 -18.57499 -17.66032 -16.87962 -16.46649 -15.91576 -15.81231 -15.50244 -15.14735 -14.74837 -14.55673 -13.89927 -13.69186 -13.53794 -13.23571 -12.95716 -12.93961 -12.40212 -12.27636 -12.27076 -12.16635 -11.71654 -11.50719 -11.31359 -11.26594 -10.96201 -10.79671 -10.73537 -10.69633 -10.45206 -10.26639 -10.00303 -9.71442 -9.40978 -9.35498 -8.85202 -8.63991 -8.42534 -8.10204 -6.07492 -4.17440 0.02359 0.26061 1.10059 1.39171 2.09725 2.82435 2.91098 3.24734 3.33680 3.35516 3.38976 3.43150 4.30020 4.41424 4.56662 4.64030 5.02292 5.19901 5.33084 5.46172 5.67326 5.74352 6.07935 6.25889 6.40507 6.43283 6.66781 6.69721 6.73552 6.76320 6.90010 6.94667 7.04182 7.28885 7.48374 7.64785 7.94137 8.03306 8.15375 8.32782 8.68327 8.83879 9.48927 10.94079 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.020891 B = 0.002300 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.978389 B =12169.510338 C =13070.668223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.147 3.853 13 N -0.722 5.722 14 C 0.694 3.306 15 O -0.577 6.577 16 N -0.681 5.681 17 C 0.146 3.854 18 C -0.230 4.230 19 S 0.226 5.774 20 C -0.791 4.791 21 S 2.729 3.271 22 N -1.249 6.249 23 O -0.960 6.960 24 O -0.948 6.948 25 C 0.026 3.974 26 H 0.005 0.995 27 H 0.086 0.914 28 H 0.027 0.973 29 H 0.028 0.972 30 H 0.086 0.914 31 H 0.005 0.995 32 H 0.260 0.740 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.396 0.604 36 H 0.409 0.591 37 H 0.177 0.823 38 H 0.421 0.579 39 H 0.417 0.583 40 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.170 4.464 22.922 23.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.056 3.944 3 C -0.189 4.189 4 C -0.545 4.545 5 H 0.078 0.922 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.210 1.210 12 C 0.025 3.975 13 N -0.376 5.376 14 C 0.394 3.606 15 O -0.454 6.454 16 N -0.330 5.330 17 C 0.038 3.962 18 C -0.372 4.372 19 S 0.491 5.509 20 C -0.993 4.993 21 S 2.814 3.186 22 N -0.925 5.925 23 O -0.950 6.950 24 O -0.937 6.937 25 C -0.012 4.012 26 H 0.024 0.976 27 H 0.105 0.895 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.105 0.895 31 H 0.024 0.976 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.232 0.768 36 H 0.245 0.755 37 H 0.194 0.806 38 H 0.251 0.749 39 H 0.244 0.756 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 2.380 2.527 24.338 24.585 hybrid contribution -0.357 1.364 -2.657 3.008 sum 2.023 3.892 21.682 22.121 Atomic orbital electron populations 1.21841 0.97757 0.99256 1.00031 1.18375 0.92807 0.92790 0.90460 1.21837 0.98682 0.98309 1.00038 1.21016 1.31505 1.12166 0.89766 0.92238 1.24879 0.94811 0.94906 0.98916 1.69808 1.36726 1.22771 1.23195 0.86500 0.78663 0.79781 0.82865 1.19669 1.21060 1.21046 1.21726 0.98235 0.95626 0.81962 1.45555 1.55010 1.32753 1.04274 1.16108 0.80960 0.82918 0.80622 1.90929 1.42430 1.26646 1.85418 1.42667 1.50280 1.37480 1.02575 1.16666 0.93573 1.01068 0.84883 1.25655 1.05061 1.10131 0.96358 1.84032 1.09235 1.52071 1.05605 1.35365 1.26333 1.30674 1.06878 1.00889 0.72088 0.71856 0.73777 1.53037 1.30404 1.22583 1.86443 1.93610 1.83502 1.72945 1.44910 1.93658 1.77896 1.68558 1.53581 1.20248 0.95571 0.89989 0.95364 0.97641 0.89537 0.95347 0.95331 0.89544 0.97622 0.93029 0.92435 0.92500 0.76839 0.75542 0.80591 0.74866 0.75584 0.80454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 8.08 37.16 0.30 -2.53 16 2 C 0.06 1.25 0.50 -155.66 -0.08 1.18 16 3 C -0.13 -2.81 8.08 37.16 0.30 -2.51 16 4 C -0.51 -12.93 8.01 -34.44 -0.28 -13.21 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 7 N -0.89 -23.08 9.35 55.43 0.52 -22.56 16 8 Si 0.89 20.43 29.54 -169.99 -5.02 15.41 16 9 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 C 0.15 2.99 4.50 -4.05 -0.02 2.97 16 13 N -0.72 -11.87 4.96 -65.23 -0.32 -12.20 16 14 C 0.69 11.34 8.43 -86.92 -0.73 10.61 16 15 O -0.58 -11.62 13.83 5.28 0.07 -11.55 16 16 N -0.68 -8.08 5.44 -15.19 -0.08 -8.16 16 17 C 0.15 1.72 6.36 -85.09 -0.54 1.18 16 18 C -0.23 -2.03 11.18 29.17 0.33 -1.71 16 19 S 0.23 2.01 23.20 -107.50 -2.49 -0.48 16 20 C -0.79 -8.71 6.54 29.03 0.19 -8.52 16 21 S 2.73 29.11 6.43 -107.50 -0.69 28.42 16 22 N -1.25 -7.54 9.55 60.35 0.58 -6.96 16 23 O -0.96 -12.33 17.90 -57.17 -1.02 -13.36 16 24 O -0.95 -14.10 17.79 -57.17 -1.02 -15.12 16 25 C 0.03 0.33 8.51 -41.08 -0.35 -0.01 16 26 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 27 H 0.09 2.09 6.07 -51.93 -0.32 1.77 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 2.08 6.07 -51.93 -0.32 1.76 16 31 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 32 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.40 5.67 6.18 -40.82 -0.25 5.41 16 36 H 0.41 3.40 8.84 -40.82 -0.36 3.04 16 37 H 0.18 1.02 8.06 -52.49 -0.42 0.59 16 38 H 0.42 1.75 8.96 -34.47 -0.31 1.44 16 39 H 0.42 1.55 8.92 -34.47 -0.31 1.24 16 40 H 0.18 2.71 6.28 -52.49 -0.33 2.38 16 LS Contribution 356.38 15.07 5.37 5.37 Total: -1.00 -34.12 356.38 -9.64 -43.77 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -4.56 Total: 8.37 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -0.97 Total: -10.96 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: 0.69 Total: -49.88 kcal Atomic # 8 Polarization: -38.06 SS G_CDS: -1.97 Total: -40.03 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: 31.13 SS G_CDS: -3.19 Total: 27.94 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.12 -9.64 -43.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413618407.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.453 kcal (2) G-P(sol) polarization free energy of solvation -34.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds