Wall clock time and date at job start Wed Apr 1 2020 05:00:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53006 * 109.47241 * 2 1
4 4 C 1.52997 * 109.47293 * 240.00013 * 2 1 3
5 5 O 1.42904 * 109.47175 * 60.00080 * 4 2 1
6 6 C 1.52998 * 109.47186 * 119.99878 * 2 1 3
7 7 N 1.46503 * 109.46924 * 300.00215 * 6 2 1
8 8 S 1.65607 * 119.99890 * 164.99983 * 7 6 2
9 9 O 1.42106 * 106.40030 * 311.46106 * 8 7 6
10 10 O 1.42092 * 106.40381 * 178.53993 * 8 7 6
11 11 C 1.76195 * 107.21775 * 64.99649 * 8 7 6
12 12 C 1.38638 * 119.75851 * 115.25815 * 11 8 7
13 13 C 1.37603 * 120.26523 * 180.29864 * 12 11 8
14 14 C 1.40731 * 119.76997 * 359.72302 * 13 12 11
15 15 C 1.41402 * 120.23511 * 180.02562 * 14 13 12
16 16 H 1.07995 * 119.99902 * 24.38186 * 15 14 13
17 17 C 1.39942 * 120.00052 * 204.37411 * 15 14 13
18 18 N 1.30829 * 119.99902 * 17.86558 * 17 15 14
19 19 Si 1.86796 * 120.00336 * 197.86037 * 17 15 14
20 20 H 1.48501 * 109.46964 * 90.00204 * 19 17 15
21 21 H 1.48497 * 109.47378 * 210.00154 * 19 17 15
22 22 H 1.48498 * 109.47041 * 330.00602 * 19 17 15
23 23 C 1.40671 * 119.52737 * 359.97438 * 14 13 12
24 24 C 1.37759 * 119.73355 * 0.02562 * 23 14 13
25 25 Cl 1.73604 * 119.88879 * 179.97438 * 24 23 14
26 26 H 1.08994 * 109.47116 * 299.99986 * 1 2 3
27 27 H 1.09000 * 109.46744 * 59.99889 * 1 2 3
28 28 H 1.08991 * 109.46954 * 180.02562 * 1 2 3
29 29 H 1.09001 * 109.47156 * 179.97438 * 3 2 1
30 30 H 1.08993 * 109.46972 * 299.99930 * 3 2 1
31 31 H 1.09001 * 109.47057 * 59.99583 * 3 2 1
32 32 H 1.09005 * 109.47043 * 179.97438 * 4 2 1
33 33 H 1.09000 * 109.46849 * 299.99803 * 4 2 1
34 34 H 0.96701 * 113.99991 * 179.97438 * 5 4 2
35 35 H 1.09001 * 109.47531 * 180.02562 * 6 2 1
36 36 H 1.09000 * 109.47278 * 60.00000 * 6 2 1
37 37 H 0.96991 * 120.00361 * 344.99633 * 7 6 2
38 38 H 1.08004 * 119.86609 * 359.97438 * 12 11 8
39 39 H 1.08003 * 120.11041 * 179.69906 * 13 12 11
40 40 H 0.97000 * 119.99707 * 180.02562 * 18 17 15
41 41 H 1.08004 * 120.13404 * 180.02562 * 23 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2492
5 8 1.5637 -0.0476 -2.4160
6 6 2.0400 -0.7212 1.2492
7 7 1.5516 -0.0306 2.4454
8 16 1.6256 -0.7781 3.9213
9 8 1.0839 -2.0792 3.7397
10 8 1.1155 0.1510 4.8677
11 6 3.3300 -0.9986 4.3094
12 6 3.8796 -0.3362 5.3963
13 6 5.2109 -0.4961 5.7052
14 6 6.0147 -1.3403 4.9168
15 6 7.3838 -1.5122 5.2256
16 1 7.7353 -1.3448 6.2330
17 6 8.2834 -1.8993 4.2260
18 7 7.9575 -1.7672 2.9659
19 14 9.9495 -2.6045 4.6908
20 1 9.8437 -4.0801 4.8205
21 1 10.9403 -2.2701 3.6364
22 1 10.3890 -2.0242 5.9851
23 6 5.4461 -2.0129 3.8199
24 6 4.1110 -1.8384 3.5287
25 17 3.4053 -2.6659 2.1756
26 1 -0.3633 0.5138 0.8899
27 1 -0.3633 0.5139 -0.8900
28 1 -0.3633 -1.0276 0.0005
29 1 3.1301 1.4425 0.0005
30 1 1.6768 1.9563 -0.8899
31 1 1.6767 1.9564 0.8900
32 1 3.1301 -0.7208 -1.2494
33 1 1.6767 -1.7489 -1.2491
34 1 1.8494 -0.4509 -3.2472
35 1 3.1300 -0.7208 1.2495
36 1 1.6767 -1.7489 1.2493
37 1 1.1850 0.8645 2.3729
38 1 3.2614 0.3119 5.9999
39 1 5.6376 0.0249 6.5496
40 1 8.5809 -2.0359 2.2730
41 1 6.0538 -2.6635 3.2084
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001414235015.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:00:39
Heat of formation + Delta-G solvation = -120.708889 kcal
Electronic energy + Delta-G solvation = -27089.710661 eV
Core-core repulsion = 23121.990632 eV
Total energy + Delta-G solvation = -3967.720029 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 347.079 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-38.65728 -37.90531 -36.56708 -35.91859 -35.64204 -35.10170 -34.14818 -32.38090
-30.36289 -29.50656 -27.17723 -26.79681 -26.05265 -24.92925 -21.84431 -21.36277
-19.22446 -18.85533 -17.89241 -17.61038 -17.19549 -16.55024 -15.74957 -15.66215
-15.18498 -14.62948 -14.56531 -14.37478 -14.04612 -13.68384 -13.54046 -13.37981
-12.77281 -12.65327 -12.58716 -12.38528 -12.13487 -11.79389 -11.68613 -11.58730
-11.48745 -11.34157 -11.29061 -11.22714 -10.97215 -10.93984 -10.62826 -10.56704
-10.45806 -10.12189 -10.01801 -9.95761 -9.66286 -9.39103 -8.92453 -8.14452
-7.74708 -7.30614 -4.98455 1.22870 2.00941 2.61222 2.79366 2.83894
2.85140 2.88488 3.55417 3.66522 4.04071 4.21517 4.45784 4.79956
4.81599 5.01915 5.12140 5.24465 5.39486 5.50670 5.52432 5.74278
5.80698 5.90790 5.93536 5.97199 6.03714 6.14563 6.31109 6.36984
6.40907 6.41552 6.51286 6.63264 6.76701 6.95959 7.13345 7.28072
7.38150 7.53439 7.54341 7.72366 8.04022 8.30295 8.36850 9.59705
Molecular weight = 347.08amu
Principal moments of inertia in cm(-1)
A = 0.012856 B = 0.004128 C = 0.003461
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2177.411596 B = 6780.798551 C = 8088.744945
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.073 4.073
3 C -0.137 4.137
4 C 0.086 3.914
5 O -0.569 6.569
6 C 0.124 3.876
7 N -1.118 6.118
8 S 2.699 3.301
9 O -0.969 6.969
10 O -0.987 6.987
11 C -0.791 4.791
12 C 0.011 3.989
13 C -0.236 4.236
14 C 0.142 3.858
15 C -0.424 4.424
16 H 0.093 0.907
17 C 0.070 3.930
18 N -0.759 5.759
19 Si 0.920 3.080
20 H -0.261 1.261
21 H -0.272 1.272
22 H -0.257 1.257
23 C -0.167 4.167
24 C 0.070 3.930
25 Cl -0.100 7.100
26 H 0.056 0.944
27 H 0.061 0.939
28 H 0.054 0.946
29 H 0.057 0.943
30 H 0.062 0.938
31 H 0.055 0.945
32 H 0.051 0.949
33 H 0.047 0.953
34 H 0.376 0.624
35 H 0.079 0.921
36 H 0.082 0.918
37 H 0.410 0.590
38 H 0.118 0.882
39 H 0.107 0.893
40 H 0.292 0.708
41 H 0.134 0.866
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.417 1.675 -7.880 9.187
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.075 4.075
3 C -0.195 4.195
4 C 0.008 3.992
5 O -0.374 6.374
6 C -0.002 4.002
7 N -0.876 5.876
8 S 2.795 3.205
9 O -0.959 6.959
10 O -0.977 6.977
11 C -0.885 4.885
12 C -0.009 4.009
13 C -0.257 4.257
14 C 0.137 3.863
15 C -0.450 4.450
16 H 0.111 0.889
17 C -0.153 4.153
18 N -0.380 5.380
19 Si 0.743 3.257
20 H -0.186 1.186
21 H -0.197 1.197
22 H -0.180 1.180
23 C -0.188 4.188
24 C 0.042 3.958
25 Cl -0.071 7.071
26 H 0.075 0.925
27 H 0.080 0.920
28 H 0.073 0.927
29 H 0.076 0.924
30 H 0.081 0.919
31 H 0.074 0.926
32 H 0.069 0.931
33 H 0.065 0.935
34 H 0.223 0.777
35 H 0.097 0.903
36 H 0.100 0.900
37 H 0.244 0.756
38 H 0.135 0.865
39 H 0.125 0.875
40 H 0.104 0.896
41 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges -5.337 1.530 -7.298 9.170
hybrid contribution 1.708 -0.307 -0.623 1.844
sum -3.629 1.223 -7.921 8.798
Atomic orbital electron populations
1.21778 0.93792 1.01994 1.01837 1.20826 0.96877 0.96642 0.93131
1.21787 1.01206 0.94729 1.01762 1.22120 0.97579 0.94536 0.84967
1.86442 1.77558 1.57473 1.15949 1.22050 0.99517 0.95484 0.83187
1.55577 1.79043 1.29621 1.23368 1.01158 0.74646 0.73168 0.71541
1.93536 1.77861 1.39172 1.85380 1.93481 1.79892 1.64341 1.60024
1.29098 1.24118 1.22093 1.13219 1.20190 0.94924 0.93509 0.92269
1.21116 0.94057 1.05536 1.04978 1.17717 0.92916 0.86451 0.89181
1.20004 0.91934 1.35899 0.97174 0.88854 1.26195 1.02033 0.92799
0.94280 1.69792 1.37235 1.29966 1.01040 0.86076 0.79272 0.80334
0.79989 1.18605 1.19705 1.18020 1.21283 0.91258 1.04247 1.02024
1.20072 0.93509 0.94089 0.88125 1.98306 1.83362 1.79554 1.45889
0.92527 0.91978 0.92734 0.92392 0.91880 0.92627 0.93082 0.93481
0.77737 0.90312 0.89960 0.75560 0.86454 0.87509 0.89618 0.84826
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 19.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.66 8.16 37.16 0.30 -1.35 16
2 C -0.07 -0.93 0.62 -154.51 -0.10 -1.02 16
3 C -0.14 -1.68 8.16 37.16 0.30 -1.37 16
4 C 0.09 0.98 5.91 37.16 0.22 1.20 16
5 O -0.57 -5.92 12.31 -35.23 -0.43 -6.35 16
6 C 0.12 1.87 2.99 -4.04 -0.01 1.86 16
7 N -1.12 -17.66 5.33 -10.61 -0.06 -17.72 16
8 S 2.70 52.72 5.44 -107.50 -0.58 52.13 16
9 O -0.97 -20.84 15.94 -57.17 -0.91 -21.75 16
10 O -0.99 -20.69 16.94 -57.17 -0.97 -21.66 16
11 C -0.79 -17.18 5.91 -39.25 -0.23 -17.41 16
12 C 0.01 0.25 9.52 -39.67 -0.38 -0.13 16
13 C -0.24 -5.31 9.79 -38.87 -0.38 -5.69 16
14 C 0.14 3.40 5.57 -106.83 -0.60 2.80 16
15 C -0.42 -9.77 9.05 -37.74 -0.34 -10.11 16
16 H 0.09 2.02 7.91 -52.49 -0.42 1.61 16
17 C 0.07 1.52 5.14 -17.34 -0.09 1.43 16
18 N -0.76 -16.95 10.96 55.55 0.61 -16.34 16
19 Si 0.92 16.07 29.60 -169.99 -5.03 11.04 16
20 H -0.26 -4.57 7.11 56.52 0.40 -4.17 16
21 H -0.27 -4.65 7.11 56.52 0.40 -4.25 16
22 H -0.26 -4.43 7.11 56.52 0.40 -4.03 16
23 C -0.17 -3.98 8.47 -38.84 -0.33 -4.31 16
24 C 0.07 1.56 6.08 -39.57 -0.24 1.32 16
25 Cl -0.10 -1.92 20.53 -51.86 -1.06 -2.99 16
26 H 0.06 0.67 7.19 -51.93 -0.37 0.29 16
27 H 0.06 0.73 7.68 -51.93 -0.40 0.33 16
28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16
29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
30 H 0.06 0.75 7.68 -51.93 -0.40 0.35 16
31 H 0.05 0.64 6.60 -51.93 -0.34 0.30 16
32 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16
33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16
34 H 0.38 2.27 9.12 45.56 0.42 2.68 16
35 H 0.08 1.27 6.14 -51.93 -0.32 0.95 16
36 H 0.08 1.30 5.86 -51.93 -0.30 1.00 16
37 H 0.41 5.54 6.47 -34.47 -0.22 5.32 16
38 H 0.12 2.33 7.31 -52.48 -0.38 1.95 16
39 H 0.11 2.18 8.06 -52.48 -0.42 1.75 16
40 H 0.29 5.84 8.30 -40.82 -0.34 5.50 16
41 H 0.13 3.22 6.16 -52.48 -0.32 2.90 16
LS Contribution 350.80 15.07 5.29 5.29
Total: -1.00 -28.56 350.80 -9.34 -37.89
By element:
Atomic # 1 Polarization: 17.56 SS G_CDS: -4.31 Total: 13.24 kcal
Atomic # 6 Polarization: -30.92 SS G_CDS: -1.87 Total: -32.79 kcal
Atomic # 7 Polarization: -34.61 SS G_CDS: 0.55 Total: -34.06 kcal
Atomic # 8 Polarization: -47.44 SS G_CDS: -2.31 Total: -49.76 kcal
Atomic # 14 Polarization: 16.07 SS G_CDS: -5.03 Total: 11.04 kcal
Atomic # 16 Polarization: 52.72 SS G_CDS: -0.58 Total: 52.13 kcal
Atomic # 17 Polarization: -1.92 SS G_CDS: -1.06 Total: -2.99 kcal
Total LS contribution 5.29 Total: 5.29 kcal
Total: -28.56 -9.34 -37.89 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001414235015.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -82.815 kcal
(2) G-P(sol) polarization free energy of solvation -28.556 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.370 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.894 kcal
(6) G-S(sol) free energy of system = (1) + (5) -120.709 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds