Wall clock time and date at job start Wed Apr 1 2020 05:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47241 * 2 1 4 4 C 1.52997 * 109.47293 * 240.00013 * 2 1 3 5 5 O 1.42904 * 109.47175 * 60.00080 * 4 2 1 6 6 C 1.52998 * 109.47186 * 119.99878 * 2 1 3 7 7 N 1.46503 * 109.46924 * 300.00215 * 6 2 1 8 8 S 1.65607 * 119.99890 * 164.99983 * 7 6 2 9 9 O 1.42106 * 106.40030 * 311.46106 * 8 7 6 10 10 O 1.42092 * 106.40381 * 178.53993 * 8 7 6 11 11 C 1.76195 * 107.21775 * 64.99649 * 8 7 6 12 12 C 1.38638 * 119.75851 * 115.25815 * 11 8 7 13 13 C 1.37603 * 120.26523 * 180.29864 * 12 11 8 14 14 C 1.40731 * 119.76997 * 359.72302 * 13 12 11 15 15 C 1.41402 * 120.23511 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99902 * 24.38186 * 15 14 13 17 17 C 1.39942 * 120.00052 * 204.37411 * 15 14 13 18 18 N 1.30829 * 119.99902 * 17.86558 * 17 15 14 19 19 Si 1.86796 * 120.00336 * 197.86037 * 17 15 14 20 20 H 1.48501 * 109.46964 * 90.00204 * 19 17 15 21 21 H 1.48497 * 109.47378 * 210.00154 * 19 17 15 22 22 H 1.48498 * 109.47041 * 330.00602 * 19 17 15 23 23 C 1.40671 * 119.52737 * 359.97438 * 14 13 12 24 24 C 1.37759 * 119.73355 * 0.02562 * 23 14 13 25 25 Cl 1.73604 * 119.88879 * 179.97438 * 24 23 14 26 26 H 1.08994 * 109.47116 * 299.99986 * 1 2 3 27 27 H 1.09000 * 109.46744 * 59.99889 * 1 2 3 28 28 H 1.08991 * 109.46954 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47156 * 179.97438 * 3 2 1 30 30 H 1.08993 * 109.46972 * 299.99930 * 3 2 1 31 31 H 1.09001 * 109.47057 * 59.99583 * 3 2 1 32 32 H 1.09005 * 109.47043 * 179.97438 * 4 2 1 33 33 H 1.09000 * 109.46849 * 299.99803 * 4 2 1 34 34 H 0.96701 * 113.99991 * 179.97438 * 5 4 2 35 35 H 1.09001 * 109.47531 * 180.02562 * 6 2 1 36 36 H 1.09000 * 109.47278 * 60.00000 * 6 2 1 37 37 H 0.96991 * 120.00361 * 344.99633 * 7 6 2 38 38 H 1.08004 * 119.86609 * 359.97438 * 12 11 8 39 39 H 1.08003 * 120.11041 * 179.69906 * 13 12 11 40 40 H 0.97000 * 119.99707 * 180.02562 * 18 17 15 41 41 H 1.08004 * 120.13404 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 1.5637 -0.0476 -2.4160 6 6 2.0400 -0.7212 1.2492 7 7 1.5516 -0.0306 2.4454 8 16 1.6256 -0.7781 3.9213 9 8 1.0839 -2.0792 3.7397 10 8 1.1155 0.1510 4.8677 11 6 3.3300 -0.9986 4.3094 12 6 3.8796 -0.3362 5.3963 13 6 5.2109 -0.4961 5.7052 14 6 6.0147 -1.3403 4.9168 15 6 7.3838 -1.5122 5.2256 16 1 7.7353 -1.3448 6.2330 17 6 8.2834 -1.8993 4.2260 18 7 7.9575 -1.7672 2.9659 19 14 9.9495 -2.6045 4.6908 20 1 9.8437 -4.0801 4.8205 21 1 10.9403 -2.2701 3.6364 22 1 10.3890 -2.0242 5.9851 23 6 5.4461 -2.0129 3.8199 24 6 4.1110 -1.8384 3.5287 25 17 3.4053 -2.6659 2.1756 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4425 0.0005 30 1 1.6768 1.9563 -0.8899 31 1 1.6767 1.9564 0.8900 32 1 3.1301 -0.7208 -1.2494 33 1 1.6767 -1.7489 -1.2491 34 1 1.8494 -0.4509 -3.2472 35 1 3.1300 -0.7208 1.2495 36 1 1.6767 -1.7489 1.2493 37 1 1.1850 0.8645 2.3729 38 1 3.2614 0.3119 5.9999 39 1 5.6376 0.0249 6.5496 40 1 8.5809 -2.0359 2.2730 41 1 6.0538 -2.6635 3.2084 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414235015.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:39 Heat of formation + Delta-G solvation = -120.708889 kcal Electronic energy + Delta-G solvation = -27089.710661 eV Core-core repulsion = 23121.990632 eV Total energy + Delta-G solvation = -3967.720029 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -38.65728 -37.90531 -36.56708 -35.91859 -35.64204 -35.10170 -34.14818 -32.38090 -30.36289 -29.50656 -27.17723 -26.79681 -26.05265 -24.92925 -21.84431 -21.36277 -19.22446 -18.85533 -17.89241 -17.61038 -17.19549 -16.55024 -15.74957 -15.66215 -15.18498 -14.62948 -14.56531 -14.37478 -14.04612 -13.68384 -13.54046 -13.37981 -12.77281 -12.65327 -12.58716 -12.38528 -12.13487 -11.79389 -11.68613 -11.58730 -11.48745 -11.34157 -11.29061 -11.22714 -10.97215 -10.93984 -10.62826 -10.56704 -10.45806 -10.12189 -10.01801 -9.95761 -9.66286 -9.39103 -8.92453 -8.14452 -7.74708 -7.30614 -4.98455 1.22870 2.00941 2.61222 2.79366 2.83894 2.85140 2.88488 3.55417 3.66522 4.04071 4.21517 4.45784 4.79956 4.81599 5.01915 5.12140 5.24465 5.39486 5.50670 5.52432 5.74278 5.80698 5.90790 5.93536 5.97199 6.03714 6.14563 6.31109 6.36984 6.40907 6.41552 6.51286 6.63264 6.76701 6.95959 7.13345 7.28072 7.38150 7.53439 7.54341 7.72366 8.04022 8.30295 8.36850 9.59705 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.012856 B = 0.004128 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.411596 B = 6780.798551 C = 8088.744945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.073 4.073 3 C -0.137 4.137 4 C 0.086 3.914 5 O -0.569 6.569 6 C 0.124 3.876 7 N -1.118 6.118 8 S 2.699 3.301 9 O -0.969 6.969 10 O -0.987 6.987 11 C -0.791 4.791 12 C 0.011 3.989 13 C -0.236 4.236 14 C 0.142 3.858 15 C -0.424 4.424 16 H 0.093 0.907 17 C 0.070 3.930 18 N -0.759 5.759 19 Si 0.920 3.080 20 H -0.261 1.261 21 H -0.272 1.272 22 H -0.257 1.257 23 C -0.167 4.167 24 C 0.070 3.930 25 Cl -0.100 7.100 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.047 0.953 34 H 0.376 0.624 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.410 0.590 38 H 0.118 0.882 39 H 0.107 0.893 40 H 0.292 0.708 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.417 1.675 -7.880 9.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.075 4.075 3 C -0.195 4.195 4 C 0.008 3.992 5 O -0.374 6.374 6 C -0.002 4.002 7 N -0.876 5.876 8 S 2.795 3.205 9 O -0.959 6.959 10 O -0.977 6.977 11 C -0.885 4.885 12 C -0.009 4.009 13 C -0.257 4.257 14 C 0.137 3.863 15 C -0.450 4.450 16 H 0.111 0.889 17 C -0.153 4.153 18 N -0.380 5.380 19 Si 0.743 3.257 20 H -0.186 1.186 21 H -0.197 1.197 22 H -0.180 1.180 23 C -0.188 4.188 24 C 0.042 3.958 25 Cl -0.071 7.071 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.223 0.777 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.244 0.756 38 H 0.135 0.865 39 H 0.125 0.875 40 H 0.104 0.896 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.337 1.530 -7.298 9.170 hybrid contribution 1.708 -0.307 -0.623 1.844 sum -3.629 1.223 -7.921 8.798 Atomic orbital electron populations 1.21778 0.93792 1.01994 1.01837 1.20826 0.96877 0.96642 0.93131 1.21787 1.01206 0.94729 1.01762 1.22120 0.97579 0.94536 0.84967 1.86442 1.77558 1.57473 1.15949 1.22050 0.99517 0.95484 0.83187 1.55577 1.79043 1.29621 1.23368 1.01158 0.74646 0.73168 0.71541 1.93536 1.77861 1.39172 1.85380 1.93481 1.79892 1.64341 1.60024 1.29098 1.24118 1.22093 1.13219 1.20190 0.94924 0.93509 0.92269 1.21116 0.94057 1.05536 1.04978 1.17717 0.92916 0.86451 0.89181 1.20004 0.91934 1.35899 0.97174 0.88854 1.26195 1.02033 0.92799 0.94280 1.69792 1.37235 1.29966 1.01040 0.86076 0.79272 0.80334 0.79989 1.18605 1.19705 1.18020 1.21283 0.91258 1.04247 1.02024 1.20072 0.93509 0.94089 0.88125 1.98306 1.83362 1.79554 1.45889 0.92527 0.91978 0.92734 0.92392 0.91880 0.92627 0.93082 0.93481 0.77737 0.90312 0.89960 0.75560 0.86454 0.87509 0.89618 0.84826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.16 37.16 0.30 -1.35 16 2 C -0.07 -0.93 0.62 -154.51 -0.10 -1.02 16 3 C -0.14 -1.68 8.16 37.16 0.30 -1.37 16 4 C 0.09 0.98 5.91 37.16 0.22 1.20 16 5 O -0.57 -5.92 12.31 -35.23 -0.43 -6.35 16 6 C 0.12 1.87 2.99 -4.04 -0.01 1.86 16 7 N -1.12 -17.66 5.33 -10.61 -0.06 -17.72 16 8 S 2.70 52.72 5.44 -107.50 -0.58 52.13 16 9 O -0.97 -20.84 15.94 -57.17 -0.91 -21.75 16 10 O -0.99 -20.69 16.94 -57.17 -0.97 -21.66 16 11 C -0.79 -17.18 5.91 -39.25 -0.23 -17.41 16 12 C 0.01 0.25 9.52 -39.67 -0.38 -0.13 16 13 C -0.24 -5.31 9.79 -38.87 -0.38 -5.69 16 14 C 0.14 3.40 5.57 -106.83 -0.60 2.80 16 15 C -0.42 -9.77 9.05 -37.74 -0.34 -10.11 16 16 H 0.09 2.02 7.91 -52.49 -0.42 1.61 16 17 C 0.07 1.52 5.14 -17.34 -0.09 1.43 16 18 N -0.76 -16.95 10.96 55.55 0.61 -16.34 16 19 Si 0.92 16.07 29.60 -169.99 -5.03 11.04 16 20 H -0.26 -4.57 7.11 56.52 0.40 -4.17 16 21 H -0.27 -4.65 7.11 56.52 0.40 -4.25 16 22 H -0.26 -4.43 7.11 56.52 0.40 -4.03 16 23 C -0.17 -3.98 8.47 -38.84 -0.33 -4.31 16 24 C 0.07 1.56 6.08 -39.57 -0.24 1.32 16 25 Cl -0.10 -1.92 20.53 -51.86 -1.06 -2.99 16 26 H 0.06 0.67 7.19 -51.93 -0.37 0.29 16 27 H 0.06 0.73 7.68 -51.93 -0.40 0.33 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.75 7.68 -51.93 -0.40 0.35 16 31 H 0.05 0.64 6.60 -51.93 -0.34 0.30 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.38 2.27 9.12 45.56 0.42 2.68 16 35 H 0.08 1.27 6.14 -51.93 -0.32 0.95 16 36 H 0.08 1.30 5.86 -51.93 -0.30 1.00 16 37 H 0.41 5.54 6.47 -34.47 -0.22 5.32 16 38 H 0.12 2.33 7.31 -52.48 -0.38 1.95 16 39 H 0.11 2.18 8.06 -52.48 -0.42 1.75 16 40 H 0.29 5.84 8.30 -40.82 -0.34 5.50 16 41 H 0.13 3.22 6.16 -52.48 -0.32 2.90 16 LS Contribution 350.80 15.07 5.29 5.29 Total: -1.00 -28.56 350.80 -9.34 -37.89 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -4.31 Total: 13.24 kcal Atomic # 6 Polarization: -30.92 SS G_CDS: -1.87 Total: -32.79 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.55 Total: -34.06 kcal Atomic # 8 Polarization: -47.44 SS G_CDS: -2.31 Total: -49.76 kcal Atomic # 14 Polarization: 16.07 SS G_CDS: -5.03 Total: 11.04 kcal Atomic # 16 Polarization: 52.72 SS G_CDS: -0.58 Total: 52.13 kcal Atomic # 17 Polarization: -1.92 SS G_CDS: -1.06 Total: -2.99 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.56 -9.34 -37.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414235015.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.815 kcal (2) G-P(sol) polarization free energy of solvation -28.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds