Wall clock time and date at job start Wed Apr 1 2020 05:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47241 * 2 1 4 4 C 1.52997 * 109.47293 * 240.00013 * 2 1 3 5 5 O 1.42904 * 109.47175 * 60.00080 * 4 2 1 6 6 C 1.52998 * 109.47186 * 119.99878 * 2 1 3 7 7 N 1.46503 * 109.46924 * 300.00215 * 6 2 1 8 8 S 1.65607 * 119.99890 * 164.99983 * 7 6 2 9 9 O 1.42106 * 106.40030 * 311.46106 * 8 7 6 10 10 O 1.42092 * 106.40381 * 178.53993 * 8 7 6 11 11 C 1.76195 * 107.21775 * 64.99649 * 8 7 6 12 12 C 1.38638 * 119.75851 * 115.25815 * 11 8 7 13 13 C 1.37603 * 120.26523 * 180.29864 * 12 11 8 14 14 C 1.40731 * 119.76997 * 359.72302 * 13 12 11 15 15 C 1.41402 * 120.23511 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99902 * 24.38186 * 15 14 13 17 17 C 1.39942 * 120.00052 * 204.37411 * 15 14 13 18 18 N 1.30829 * 119.99902 * 17.86558 * 17 15 14 19 19 Si 1.86796 * 120.00336 * 197.86037 * 17 15 14 20 20 H 1.48501 * 109.46964 * 90.00204 * 19 17 15 21 21 H 1.48497 * 109.47378 * 210.00154 * 19 17 15 22 22 H 1.48498 * 109.47041 * 330.00602 * 19 17 15 23 23 C 1.40671 * 119.52737 * 359.97438 * 14 13 12 24 24 C 1.37759 * 119.73355 * 0.02562 * 23 14 13 25 25 Cl 1.73604 * 119.88879 * 179.97438 * 24 23 14 26 26 H 1.08994 * 109.47116 * 299.99986 * 1 2 3 27 27 H 1.09000 * 109.46744 * 59.99889 * 1 2 3 28 28 H 1.08991 * 109.46954 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47156 * 179.97438 * 3 2 1 30 30 H 1.08993 * 109.46972 * 299.99930 * 3 2 1 31 31 H 1.09001 * 109.47057 * 59.99583 * 3 2 1 32 32 H 1.09005 * 109.47043 * 179.97438 * 4 2 1 33 33 H 1.09000 * 109.46849 * 299.99803 * 4 2 1 34 34 H 0.96701 * 113.99991 * 179.97438 * 5 4 2 35 35 H 1.09001 * 109.47531 * 180.02562 * 6 2 1 36 36 H 1.09000 * 109.47278 * 60.00000 * 6 2 1 37 37 H 0.96991 * 120.00361 * 344.99633 * 7 6 2 38 38 H 1.08004 * 119.86609 * 359.97438 * 12 11 8 39 39 H 1.08003 * 120.11041 * 179.69906 * 13 12 11 40 40 H 0.97000 * 119.99707 * 180.02562 * 18 17 15 41 41 H 1.08004 * 120.13404 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 1.5637 -0.0476 -2.4160 6 6 2.0400 -0.7212 1.2492 7 7 1.5516 -0.0306 2.4454 8 16 1.6256 -0.7781 3.9213 9 8 1.0839 -2.0792 3.7397 10 8 1.1155 0.1510 4.8677 11 6 3.3300 -0.9986 4.3094 12 6 3.8796 -0.3362 5.3963 13 6 5.2109 -0.4961 5.7052 14 6 6.0147 -1.3403 4.9168 15 6 7.3838 -1.5122 5.2256 16 1 7.7353 -1.3448 6.2330 17 6 8.2834 -1.8993 4.2260 18 7 7.9575 -1.7672 2.9659 19 14 9.9495 -2.6045 4.6908 20 1 9.8437 -4.0801 4.8205 21 1 10.9403 -2.2701 3.6364 22 1 10.3890 -2.0242 5.9851 23 6 5.4461 -2.0129 3.8199 24 6 4.1110 -1.8384 3.5287 25 17 3.4053 -2.6659 2.1756 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4425 0.0005 30 1 1.6768 1.9563 -0.8899 31 1 1.6767 1.9564 0.8900 32 1 3.1301 -0.7208 -1.2494 33 1 1.6767 -1.7489 -1.2491 34 1 1.8494 -0.4509 -3.2472 35 1 3.1300 -0.7208 1.2495 36 1 1.6767 -1.7489 1.2493 37 1 1.1850 0.8645 2.3729 38 1 3.2614 0.3119 5.9999 39 1 5.6376 0.0249 6.5496 40 1 8.5809 -2.0359 2.2730 41 1 6.0538 -2.6635 3.2084 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414235015.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:38 Heat of formation + Delta-G solvation = -140.835155 kcal Electronic energy + Delta-G solvation = -27090.583401 eV Core-core repulsion = 23121.990632 eV Total energy + Delta-G solvation = -3968.592769 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.74807 -39.54535 -38.18081 -37.43851 -36.79597 -36.72857 -35.81738 -33.56712 -32.07586 -31.23636 -28.14462 -27.88185 -27.69767 -26.04335 -23.55234 -23.08073 -20.53600 -20.14998 -19.58925 -18.79288 -18.52398 -18.03510 -17.32607 -17.07872 -16.26428 -16.14962 -16.09969 -15.51278 -15.38273 -15.08052 -14.97068 -14.71188 -14.40187 -14.15303 -13.99121 -13.55080 -13.26936 -13.18183 -13.11135 -13.05146 -12.97338 -12.93479 -12.73094 -12.71970 -12.36558 -12.19648 -12.01161 -11.91668 -11.81984 -11.54621 -11.48409 -11.26447 -10.85797 -10.84032 -10.32509 -9.88029 -9.46274 -8.93826 -6.72974 -0.34385 0.30780 0.85497 1.19097 1.36631 1.43150 1.51995 2.09890 2.18684 2.43044 2.86168 3.29676 3.37442 3.65989 3.77656 3.82122 4.10643 4.22578 4.38861 4.47713 4.57193 4.61637 4.66905 4.81326 4.82248 4.85910 4.89250 4.92796 5.04826 5.06577 5.10346 5.22769 5.24063 5.39628 5.42408 5.43398 5.53758 5.79814 6.00225 6.15923 6.31275 6.57768 6.63263 6.93541 8.00170 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.012856 B = 0.004128 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.411596 B = 6780.798551 C = 8088.744945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.071 4.071 3 C -0.136 4.136 4 C 0.088 3.912 5 O -0.578 6.578 6 C 0.122 3.878 7 N -1.103 6.103 8 S 2.722 3.278 9 O -0.988 6.988 10 O -0.999 6.999 11 C -0.805 4.805 12 C 0.005 3.995 13 C -0.250 4.250 14 C 0.115 3.885 15 C -0.449 4.449 16 H 0.100 0.900 17 C 0.036 3.964 18 N -0.785 5.785 19 Si 0.991 3.009 20 H -0.261 1.261 21 H -0.263 1.263 22 H -0.252 1.252 23 C -0.190 4.190 24 C 0.064 3.936 25 Cl -0.077 7.077 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.396 0.604 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.422 0.578 38 H 0.134 0.866 39 H 0.121 0.879 40 H 0.302 0.698 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.340 1.892 -8.667 9.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.073 4.073 3 C -0.194 4.194 4 C 0.010 3.990 5 O -0.386 6.386 6 C -0.004 4.004 7 N -0.866 5.866 8 S 2.816 3.184 9 O -0.978 6.978 10 O -0.989 6.989 11 C -0.898 4.898 12 C -0.015 4.015 13 C -0.271 4.271 14 C 0.111 3.889 15 C -0.474 4.474 16 H 0.118 0.882 17 C -0.185 4.185 18 N -0.407 5.407 19 Si 0.810 3.190 20 H -0.185 1.185 21 H -0.188 1.188 22 H -0.175 1.175 23 C -0.211 4.211 24 C 0.036 3.964 25 Cl -0.048 7.048 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.245 0.755 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.260 0.740 38 H 0.152 0.848 39 H 0.139 0.861 40 H 0.113 0.887 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.257 1.758 -8.094 9.811 hybrid contribution 1.597 -0.351 -0.487 1.706 sum -3.660 1.407 -8.581 9.434 Atomic orbital electron populations 1.21773 0.93179 1.02064 1.02270 1.20791 0.97321 0.96704 0.92500 1.21778 1.00763 0.94505 1.02305 1.22020 0.97510 0.94617 0.84902 1.86386 1.77690 1.57841 1.16656 1.22045 0.98960 0.95535 0.83889 1.55218 1.78718 1.30267 1.22370 1.00445 0.73415 0.72652 0.71889 1.93510 1.77829 1.40547 1.85897 1.93456 1.79762 1.64511 1.61207 1.29503 1.25266 1.21811 1.13187 1.20457 0.94984 0.93628 0.92465 1.21344 0.94533 1.05711 1.05478 1.18070 0.93891 0.87155 0.89821 1.20314 0.92170 1.36969 0.97995 0.88246 1.27017 1.05302 0.92372 0.93836 1.69816 1.38778 1.30097 1.02051 0.85035 0.74769 0.79271 0.79905 1.18508 1.18765 1.17535 1.21274 0.91976 1.05143 1.02719 1.20218 0.93341 0.94038 0.88772 1.98305 1.82786 1.79193 1.44540 0.92309 0.91336 0.92865 0.93083 0.91283 0.92138 0.93137 0.92912 0.75462 0.91383 0.90608 0.73992 0.84785 0.86120 0.88665 0.85868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.16 71.98 0.59 -2.44 16 2 C -0.07 -1.69 0.62 -52.18 -0.03 -1.73 16 3 C -0.14 -3.10 8.16 71.98 0.59 -2.52 16 4 C 0.09 1.84 5.91 71.98 0.43 2.27 16 5 O -0.58 -10.74 12.31 -148.98 -1.83 -12.57 16 6 C 0.12 3.55 2.99 86.38 0.26 3.81 16 7 N -1.10 -33.58 5.33 -187.49 -1.00 -34.58 16 8 S 2.72 104.19 5.44 -56.49 -0.31 103.88 16 9 O -0.99 -41.71 15.94 -128.00 -2.04 -43.75 16 10 O -1.00 -40.74 16.94 -128.00 -2.17 -42.91 16 11 C -0.81 -34.97 5.91 22.48 0.13 -34.84 16 12 C 0.00 0.20 9.52 22.22 0.21 0.41 16 13 C -0.25 -11.39 9.79 22.73 0.22 -11.17 16 14 C 0.11 5.62 5.57 -21.30 -0.12 5.51 16 15 C -0.45 -20.94 9.05 23.46 0.21 -20.73 16 16 H 0.10 4.34 7.91 -2.91 -0.02 4.32 16 17 C 0.04 1.54 5.14 85.26 0.44 1.98 16 18 N -0.79 -35.34 10.96 21.83 0.24 -35.10 16 19 Si 0.99 32.29 29.60 68.60 2.03 34.32 16 20 H -0.26 -8.40 7.11 99.48 0.71 -7.70 16 21 H -0.26 -8.14 7.11 99.48 0.71 -7.43 16 22 H -0.25 -7.96 7.11 99.48 0.71 -7.25 16 23 C -0.19 -9.27 8.47 22.75 0.19 -9.08 16 24 C 0.06 2.90 6.08 22.27 0.14 3.04 16 25 Cl -0.08 -2.96 20.53 -2.72 -0.06 -3.01 16 26 H 0.06 1.26 7.19 -2.39 -0.02 1.25 16 27 H 0.07 1.45 7.68 -2.39 -0.02 1.43 16 28 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.05 1.22 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.50 7.68 -2.39 -0.02 1.48 16 31 H 0.06 1.29 6.60 -2.39 -0.02 1.27 16 32 H 0.05 1.05 8.14 -2.38 -0.02 1.04 16 33 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.40 3.86 9.12 -74.06 -0.68 3.18 16 35 H 0.07 2.15 6.14 -2.39 -0.01 2.14 16 36 H 0.08 2.32 5.86 -2.39 -0.01 2.31 16 37 H 0.42 10.74 6.47 -96.75 -0.63 10.11 16 38 H 0.13 5.25 7.31 -2.91 -0.02 5.23 16 39 H 0.12 4.96 8.06 -2.91 -0.02 4.93 16 40 H 0.30 12.03 8.30 -92.71 -0.77 11.26 16 41 H 0.12 6.13 6.16 -2.91 -0.02 6.11 16 Total: -1.00 -60.04 350.80 -2.09 -62.13 By element: Atomic # 1 Polarization: 37.27 SS G_CDS: -0.21 Total: 37.06 kcal Atomic # 6 Polarization: -68.73 SS G_CDS: 3.25 Total: -65.48 kcal Atomic # 7 Polarization: -68.92 SS G_CDS: -0.76 Total: -69.68 kcal Atomic # 8 Polarization: -93.18 SS G_CDS: -6.04 Total: -99.22 kcal Atomic # 14 Polarization: 32.29 SS G_CDS: 2.03 Total: 34.32 kcal Atomic # 16 Polarization: 104.19 SS G_CDS: -0.31 Total: 103.88 kcal Atomic # 17 Polarization: -2.96 SS G_CDS: -0.06 Total: -3.01 kcal Total: -60.04 -2.09 -62.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414235015.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.704 kcal (2) G-P(sol) polarization free energy of solvation -60.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds